Ss1.1-LyN1-MLN01F020067.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGTTGGACCCCATGGCCTTGCAGACCAATGGCTAAGCTGCCCCCTGATTCCCATCTAG ATGCAGCTGCCTTGGCAGCCCAGAGCAAGTCTTCAGAAGACATCATCAAGTTTTCCAAGT TCCCAGCAGCCCAGGCTCCAGACCCCAGCGAGATACCAAAGATTGAGACGGACCACTGGC CTGGTCCCCCCTCACTTGCTGCCGTAGGAGCTGACACGAGACGCAGATCTAGCGGCCGAG AGGAAGATGATGAGGAACTGCTGAGACGCCGGCAGCTTCAAGAGGAGCAGTTAATGAAGC TCAACTCAGGCCTGGGCCAGTTGATACTGAAAGAAGAGATGGAGAAGGAGAGAGAGAGCC GGGAGAGGTCCACCCTGGCAGCCAGTCGCTACGATTCTCCCATCAACTCAGCTTCACATG CTCTGTCATCTAAAACCTCATCTCTCCCAGGCTATGGAAGAAATGGGCTTCATCGGCCTG TTTCTACAGACTTTGCTCAGTACAACAGCTACGGGGATGTCAGCGGGGGAGTGCGAGACT ACCAGACCCTCCCAGATGGCCACATGCCAGCCATGAGGATGGACCGGGGGGTCTCCATGC CCAACATGTTGGAACCAAAGATATTTCCATATGAAATGCTGATGGTGACCAACAGAGGGC GCAATAAAATCCTAAGAGATGTGGACAGAACCCGGCTGGAGCGCCACTTAGCCCCAGAAG TGTTTCGGGAAATCTTTGGAATGTCCATCCAGGAGTTTGACAAGTTACCTCTTTGGAGAC GCAACGACATGAAGAAAAAAGCCAAACTCTTCTAAGTCCCCCACGTAGACAGCCATTCGA CAAAGGACTAACCACGGCAGTGCCGCATAGGATGTTATATTAAGGCCCAAAGTTGATCGG AGAACTTGCAAACTGCTGTCCCGCAGCAACAACAGAAAGGGAAAATCGGATTAAAACACC CATGAGCCACATATTGGGCCCACCCACGGCAGCCCTTGCCCAGAAGCAATGGGGTGAAAA CGTCTGTGTTCCCACACTCAACGGTAGCGGTCCCGTGTGACCTTTTTTCCATCACCTTAT GTACGCAACAGGAGCTATTTCTTTTGTTTCCTTTCAGCTGTTGTCCAACCATAGTGCTGA CTGTATGGATAAGAGCCAGCAAGTGCCCTTAGGATGCCGCATGGAAAAAAGCAATTGTTG CAACTCCAGAGTCTGAGTATATTTATTAAGTAGTGCCGAGGCTGAGAAGGAAGAGCCGGA GGGACAGAGTCAAGGGACAGATCCACGGGGTGGCAGCCTCTGCACACGCCTTTTTTCACG GGCTTCCTGCAGCCCTGCCCACGCTTCACCAGGATGGAAACCAAAGTGGCAGGGGTGGGG GGGGGGTGCCCCAGCAGCTCTCTTTGAATAGCCGCCAGAGTCCCTTTTAACCAGCTCCTT GTTCCCACTGTTTGCTAGGACCTGATGGGTGAATTCCTTAGCTAGAATTAAAAAGAAAAA AAAAAAATGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGTTGGACCCCATGGCCTTGCAGACCAATGGCTAAGCTGCCCCCTGATTCCCATCTAG ATGCAGCTGCCTTGGCAGCCCAGAGCAAGTCTTCAGAAGACATCATCAAGTTTTCCAAGT TCCCAGCAGCCCAGGCTCCAGACCCCAGCGAGATACCAAAGATTGAGACGGACCACTGGC CTGGTCCCCCCTCACTTGCTGCCGTAGGAGCTGACACGAGACGCAGATCTAGCGGCCGAG AGGAAGATGATGAGGAACTGCTGAGACGCCGGCAGCTTCAAGAGGAGCAGTTAATGAAGC TCAACTCAGGCCTGGGCCAGTTGATACTGAAAGAAGAGATGGAGAAGGAGAGAGAGAGCC GGGAGAGGTCCACCCTGGCAGCCAGTCGCTACGATTCTCCCATCAACTCAGCTTCACATG CTCTGTCATCTAAAACCTCATCTCTCCCAGGCTATGGAAGAAATGGGCTTCATCGGCCTG TTTCTACAGACTTTGCTCAGTACAACAGCTACGGGGATGTCAGCGGGGGAGTGCGAGACT ACCAGACCCTCCCAGATGGCCACATGCCAGCCATGAGGATGGACCGGGGGGTCTCCATGC CCAACATGTTGGAACCAAAGATATTTCCATATGAAATGCTGATGGTGACCAACAGAGGGC GCAATAAAATCCTAAGAGATGTGGACAGAACCCGGCTGGAGCGCCACTTAGCCCCAGAAG TGTTTCGGGAAATCTTTGGAATGTCCATCCAGGAGTTTGACAAGTTACCTCTTTGGAGAC GCAACGACATGAAGAAAAAAGCCAAACTCTTCTAAGTCCCCCACGTAGACAGCCATTCGA CAAAGGACTAACCACGGCAGTGCCGCATAGGATGTTATATTAAGGCCCAAAGTTGATCGG AGAACTTGCAAACTGCTGTCCCGCAGCAACAACAGAAAGGGAAAATCGGATTAAAACACC CATGAGCCACATATTGGGCCCACCCACGGCAGCCCTTGCCCAGAAGCAATGGGGTGAAAA CGTCTGTGTTCCCACACTCAACGGTAGCGGTCCCGTGTGACCTTTTTTCCATCACCTTAT GTACGCAACAGGAGCTATTTCTTTTGTTTCCTTTCAGCTGTTGTCCAACCATAGTGCTGA CTGTATGGATAAGAGCCAGCAAGTGCCCTTAGGATGCCGCATGGAAAAAAGCAATTGTTG CAACTCCAGAGTCTGAGTATATTTATTAAGTAGTGCCGAGGCTGAGAAGGAAGAGCCGGA GGGACAGAGTCAAGGGACAGATCCACGGGGTGGCAGCCTCTGCACACGCCTTTTTTCACG GGCTTCCTGCAGCCCTGCCCACGCTTCACCAGGATGGAAACCAAAGTGGCAGGGGTGGGG GGGGGGTGCCCCAGCAGCTCTCTTTGAATAGCCGCCAGAGTCCCTTTTAACCAGCTCCTT GTTCCCACTGTTTGCTAGGACCTGATGGGTGAATTCCTTAGCTAGAATTAAAAAGAAAAA AAAAAAATGAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr26 (22011727-22011520) | |
| 1-208, gnl|canFam2|chr28 (28271793-28271965) | |
| 1-208, gnl|danRer3|chr12 (29576904-29576737) | |
| 1-208, gnl|dasNov1|scaffold_3163 (68451-68622) | |
| 1-208, gnl|echTel1|scaffold_296345 (43598-43427) | |
| 1-208, gnl|fr1|chrUn (280835157-280835320) | |
| 1-208, gnl|galGal2|chr6 (26884629-26884799) | |
| 1-208, gnl|hg17|chr10 (116197622-116197794) | |
| 1-208, gnl|Hg17|chr10 (116197835-116197628) | |
| 1-208, gnl|loxAfr1|scaffold_63143 (25805-25634) | |
| 1-208, gnl|mm7|chr19 (56962905-56963076) | |
| 1-208, gnl|Mm7|chr19 (56963116-56962911) | |
| 1-208, gnl|monDom2|scaffold_14 (47480214-47480042) | |
| 1-208, gnl|panTro1|chr8 (118362286-118362458) | |
| 1-208, gnl|rheMac2|chr9 (114101080-114101252) | |
| 1-208, gnl|rn3|chr1 (263601530-263601701) | |
| 1-208, gnl|tetNig1|chr17 (1455425-1455572) | |
| 298-411, gnl|bosTau2|chr26 (22008026-22007913) | |
| 298-411, gnl|Hg17|chr10 (116193885-116193778) | |
| 298-411, gnl|Mm7|chr19 (56959887-56959783) | |
| 700-1512, gnl|bosTau2|chr26 (22001199-22000422) | |
| 700-1512, gnl|Hg17|chr10 (116186124-116185319) | |
| 700-1512, gnl|Mm7|chr19 (56953326-56952577) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr26 (22011727-22011520) | |
| 1-208, gnl|canFam2|chr28 (28271793-28271965) | |
| 1-208, gnl|danRer3|chr12 (29576904-29576737) | |
| 1-208, gnl|dasNov1|scaffold_3163 (68451-68622) | |
| 1-208, gnl|echTel1|scaffold_296345 (43598-43427) | |
| 1-208, gnl|fr1|chrUn (280835157-280835320) | |
| 1-208, gnl|galGal2|chr6 (26884629-26884799) | |
| 1-208, gnl|hg17|chr10 (116197622-116197794) | |
| 1-208, gnl|Hg17|chr10 (116197835-116197628) | |
| 1-208, gnl|loxAfr1|scaffold_63143 (25805-25634) | |
| 1-208, gnl|mm7|chr19 (56962905-56963076) | |
| 1-208, gnl|Mm7|chr19 (56963116-56962911) | |
| 1-208, gnl|monDom2|scaffold_14 (47480214-47480042) | |
| 1-208, gnl|panTro1|chr8 (118362286-118362458) | |
| 1-208, gnl|rheMac2|chr9 (114101080-114101252) | |
| 1-208, gnl|rn3|chr1 (263601530-263601701) | |
| 1-208, gnl|tetNig1|chr17 (1455425-1455572) | |
| 298-411, gnl|bosTau2|chr26 (22008026-22007913) | |
| 298-411, gnl|Hg17|chr10 (116193885-116193778) | |
| 298-411, gnl|Mm7|chr19 (56959887-56959783) | |
| 700-1512, gnl|bosTau2|chr26 (22001199-22000422) | |
| 700-1512, gnl|Hg17|chr10 (116186124-116185319) | |
| 700-1512, gnl|Mm7|chr19 (56953326-56952577) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| che (0.272628) | |
| hea (0.204499) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| hea (0.204499) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) |