Ss1.1-LyN1-MLN01F020077.5
|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGGTCAGAAGGCGCTTTATTGAA
GGGCGGGGCTCTGGCATCCCGCGGCGGCTATAACTGGATCTCCCGGAAGGCCCGCTTCTC
CACCAGCTTCACTTTGTACTTGCGCTTGAACTTGGCGCGCTCGCGAGGCTCGATCATGTT
TCTCCGCTGGAAGCTCTTGAACCGGTCCCGGAGGATGTTGCCCTCGGGCTTCAGGGTCCG
GAGCGAGTCAGACAGCTCGGAGCTGAGCTGCACGTCAATGTCGGGGTCCTGATACTTGAG
CCGCCCCAGCCGGCGGGGCTTGTCGGCCTCCACCAGCCTCTGCGCCTGCCGCCGCTCCCG
GCGCCGTGCCAACTCCGCCAGCCGCCGTGCCACCTGCGCCTTGATCCCACGCAGCCTGAA
GAGCTCCTGGTGCCGGAGCCGGGCGGCCCGCACCGCGGCCTGCTGTGCTCTCAGCATCCG
GGCGGCCTTTTCCCGCCGCCGCTGCTGCTCCGTCTTCTTCTCCAAGGAGGCCAGGCGGAC
GGCTGGCGAGGCCTCTGCTCCTTCGGCCTGGTCTCCTCCAGCCTCCAGCCCCCGGTCCTG
GCCCTCGGCCAGCTCCCCCTCCCCGTCCGACTCCTCCAGCAGCCCCTGGCACATCTCCTG
GAAGGCGGACTCCTGGGTGGCGGCCTGCTCGGCGGGGGGCAGGGCCAGCTGCCGCTCCAG
CTTCTCCACCTCTTTCTGCCGCTGCAGCTCTACCTCATGGGCCGCACGGAGCAGAGTCTG
GTGGTCCTCAAAGGACGGGTTGTAGGAGGCTCCCGCGGGGGTCACCTCCACAGCAGGCGC
CTGGGAGGGCTTGGTGTGGAGATGCTGAGGCCGCTTCACCCCCTTCTTCTTGGTCTGCTC
CAGGAAGAACGCGTCCTGGCCTTCCAGGGGCCCATCCAGCGGGTTGTCTTTGGCCCAGAG
GTCATAGAAGGGACGCCCGGCGGCATCCTGGGGCCCAGGCTTGGCTCTGGCCGCAGGAGG
GTTGAGGAGCCGGGCCTGCGCCCTGCGCACCTCCCGGGGCAGCTCGCCCTGCTTGGCCAG
CTTCTCCCATAGCTGCTCCTTCCGCCGGAGCTTCTTGGCATTGGGGACCTGGTGGGCAAG
GACGTCTTTGGGGGCAGGGACCTTGGATGTGTTCTCTAGGACGAGGTCGATCCGAAGGGG
TTTCTTGAGAAGCAGGGACCTCTTCTGGCTTCTGGTCCTCTTCCTGTTCAGCTCTTTATT
CTTGGAGCCAGTGTCCACGAAGAAGAGTTTTTCATCCGGGGCCTCTGATATCAAGCCACC
GCTCGTGCGCTCCTGCAGCCGCACGTCCTCCAGGAACTGATCGACCTCCAGTCCCAGCGG
CTCCTGAGCGAGCCGCCGCCACCCCCGCTTCTTATTTCTTGGGCCTCGCCGCCGCCGCCT
CAAGGCTGGGTCCACCGAAGTGGGCCGCAGCCCCAGGAAGCCAGAGTCGGCCTCGCTTTT
TGAGCAGCGCGCACCGCCAGCGGCACTACTTCCCGCCGCCATCTTGTTAAAGGAAGCACT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGGTCAGAAGGCGCTTTATTGAA
GGGCGGGGCTCTGGCATCCCGCGGCGGCTATAACTGGATCTCCCGGAAGGCCCGCTTCTC
CACCAGCTTCACTTTGTACTTGCGCTTGAACTTGGCGCGCTCGCGAGGCTCGATCATGTT
TCTCCGCTGGAAGCTCTTGAACCGGTCCCGGAGGATGTTGCCCTCGGGCTTCAGGGTCCG
GAGCGAGTCAGACAGCTCGGAGCTGAGCTGCACGTCAATGTCGGGGTCCTGATACTTGAG
CCGCCCCAGCCGGCGGGGCTTGTCGGCCTCCACCAGCCTCTGCGCCTGCCGCCGCTCCCG
GCGCCGTGCCAACTCCGCCAGCCGCCGTGCCACCTGCGCCTTGATCCCACGCAGCCTGAA
GAGCTCCTGGTGCCGGAGCCGGGCGGCCCGCACCGCGGCCTGCTGTGCTCTCAGCATCCG
GGCGGCCTTTTCCCGCCGCCGCTGCTGCTCCGTCTTCTTCTCCAAGGAGGCCAGGCGGAC
GGCTGGCGAGGCCTCTGCTCCTTCGGCCTGGTCTCCTCCAGCCTCCAGCCCCCGGTCCTG
GCCCTCGGCCAGCTCCCCCTCCCCGTCCGACTCCTCCAGCAGCCCCTGGCACATCTCCTG
GAAGGCGGACTCCTGGGTGGCGGCCTGCTCGGCGGGGGGCAGGGCCAGCTGCCGCTCCAG
CTTCTCCACCTCTTTCTGCCGCTGCAGCTCTACCTCATGGGCCGCACGGAGCAGAGTCTG
GTGGTCCTCAAAGGACGGGTTGTAGGAGGCTCCCGCGGGGGTCACCTCCACAGCAGGCGC
CTGGGAGGGCTTGGTGTGGAGATGCTGAGGCCGCTTCACCCCCTTCTTCTTGGTCTGCTC
CAGGAAGAACGCGTCCTGGCCTTCCAGGGGCCCATCCAGCGGGTTGTCTTTGGCCCAGAG
GTCATAGAAGGGACGCCCGGCGGCATCCTGGGGCCCAGGCTTGGCTCTGGCCGCAGGAGG
GTTGAGGAGCCGGGCCTGCGCCCTGCGCACCTCCCGGGGCAGCTCGCCCTGCTTGGCCAG
CTTCTCCCATAGCTGCTCCTTCCGCCGGAGCTTCTTGGCATTGGGGACCTGGTGGGCAAG
GACGTCTTTGGGGGCAGGGACCTTGGATGTGTTCTCTAGGACGAGGTCGATCCGAAGGGG
TTTCTTGAGAAGCAGGGACCTCTTCTGGCTTCTGGTCCTCTTCCTGTTCAGCTCTTTATT
CTTGGAGCCAGTGTCCACGAAGAAGAGTTTTTCATCCGGGGCCTCTGATATCAAGCCACC
GCTCGTGCGCTCCTGCAGCCGCACGTCCTCCAGGAACTGATCGACCTCCAGTCCCAGCGG
CTCCTGAGCGAGCCGCCGCCACCCCCGCTTCTTATTTCTTGGGCCTCGCCGCCGCCGCCT
CAAGGCTGGGTCCACCGAAGTGGGCCGCAGCCCCAGGAAGCCAGAGTCGGCCTCGCTTTT
TGAGCAGCGCGCACCGCCAGCGGCACTACTTCCCGCCGCCATCTTGTTAAAGGAAGCACT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
453-704, gnl|bosTau2|chr18 (47636531-47636276) |
|
453-704, gnl|Hg17|chr19 (52950051-52949740) |
|
453-704, gnl|Mm7|chr7_random (1018792-1019029) |
| |
|
945-1154, gnl|bosTau2|chr18 (47633327-47633117) |
|
945-1154, gnl|Hg17|chr19 (52946176-52945967) |
|
945-1154, gnl|Mm7|chr7_random (1021522-1021732) |
| |
|
1319-1556, gnl|bosTau2|chr18 (47630135-47629898) |
|
1319-1556, gnl|canFam2|chr1 (111201596-111201367) |
|
1319-1556, gnl|dasNov1|scaffold_52625 (4155-4387) |
|
1319-1556, gnl|hg17|chr15 (93199697-93199933) |
|
1319-1556, gnl|Hg17|chr19 (52940852-52940615) |
|
1319-1556, gnl|loxAfr1|scaffold_137848 (1463-1696) |
|
1319-1556, gnl|mm7|chr1 (4685008-4684778) |
|
1319-1556, gnl|Mm7|chr7_random (1025182-1025419) |
|
1319-1556, gnl|monDom2|scaffold_149 (1028799-1028581) |
|
1319-1556, gnl|panTro1|chr16 (94187101-94187334) |
|
1319-1556, gnl|rheMac2|chr19 (54078472-54078704) |
|
1319-1556, gnl|rn3|chr1 (76366694-76366461) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
453-704, gnl|bosTau2|chr18 (47636531-47636276) |
|
453-704, gnl|Hg17|chr19 (52950051-52949740) |
|
453-704, gnl|Mm7|chr7_random (1018792-1019029) |
| |
|
945-1154, gnl|bosTau2|chr18 (47633327-47633117) |
|
945-1154, gnl|Hg17|chr19 (52946176-52945967) |
|
945-1154, gnl|Mm7|chr7_random (1021522-1021732) |
| |
|
1319-1556, gnl|bosTau2|chr18 (47630135-47629898) |
|
1319-1556, gnl|canFam2|chr1 (111201596-111201367) |
|
1319-1556, gnl|dasNov1|scaffold_52625 (4155-4387) |
|
1319-1556, gnl|hg17|chr15 (93199697-93199933) |
|
1319-1556, gnl|Hg17|chr19 (52940852-52940615) |
|
1319-1556, gnl|loxAfr1|scaffold_137848 (1463-1696) |
|
1319-1556, gnl|mm7|chr1 (4685008-4684778) |
|
1319-1556, gnl|Mm7|chr7_random (1025182-1025419) |
|
1319-1556, gnl|monDom2|scaffold_149 (1028799-1028581) |
|
1319-1556, gnl|panTro1|chr16 (94187101-94187334) |
|
1319-1556, gnl|rheMac2|chr19 (54078472-54078704) |
|
1319-1556, gnl|rn3|chr1 (76366694-76366461) |
|
med (0.813764) |
|
fce (0.543183) |
|
cty (0.41632) |
|
cov (0.396458) |
|
fty (0.351679) |
|
ton (0.351) |
|
jca (0.34188) |
|
mcp (0.341297) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
eru (0.240096) |
|
clu (0.239292) |
|
ecc (0.23007) |
|
cbl (0.229595) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nco (0.161734) |
|
cli (0.152812) |
|
eli (0.151814) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
ese (0.126502) |
|
cly (0.120642) |
|
jej (0.0989218) |
|
med (0.813764) |
|
fce (0.543183) |
|
cty (0.41632) |
|
cov (0.396458) |
|
fty (0.351679) |
|
ton (0.351) |
|
jca (0.34188) |
|
mcp (0.341297) |
|
nmm (0.265604) |
|
eep (0.245128) |
|
eru (0.240096) |
|
clu (0.239292) |
|
ecc (0.23007) |
|
cbl (0.229595) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nco (0.161734) |
|
cli (0.152812) |
|
eli (0.151814) |
|
cag (0.151194) |
|
lnt (0.142308) |
|
ese (0.126502) |
|
cly (0.120642) |
|
jej (0.0989218) |
