Non-Coding RNA Search

Ss1.1-LyN1-MLN01F020096.5

Sequence:


               
               GTTGGCAGAGCCTCCGAAACGCGCGGAACCGGTGGCCCACAGCCCAGTCAGCTCTCCACC
AAAAGGTCCCGCTCGCCCCACACCCGGCCATGTCGTCCTACACCCGCGTGGCGTTGGTGA
CTGGCGCCAACAAGGGCATCGGCTTCGCCATCGCGCGTGATCTGTGCCGGCAGTTCTCGG
GGGATGTGGTGCTCACCTCGCGGGACGCTGCTCGGGGCCGGGCGGCGGTGCAGCAGCTGC
AGGCCGAGGGCCTGAGCCCGCGTTTCCACCAGCTGGACATCGACGACCTGCAGAGCATCC
GCGCCCTGCGCGACTTCCTGCGCAAGGAGTATGGGGGACTCAACGTGCTGGTCAACAACG
CGGGCATCGCTTTCAAGATTGATGATCCAACGCCCTTTGACATTCAAGCTGAGATGACGC
TGAAGACAAACTTTTTTGGCACAAGAAATGTCTGCATCGAATTACTGCCGATCATAAAAC
CTCATGGCAGAGTGGTGAATATCAGTAGTTTGCTGGGTTCCAAAGCCCTTGAAAACTGCA
GCGAGGATCTGCAGGAGAAGTTCCGGTGTGAGGCACTCACAGAGGAAGACCTGGTGGACC
TCATGAAAAAGTTTGTGGAGGATGCAAAAAATGAGGTGCATGAAAGGGAAGGCTGGCCCA
GCTCGGCTTATGGGGTGTCCAAACTGGGGGTCACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCAGAGCCTCCGAAACGCGCGGAACCGGTGGCCCACAGCCCAGTCAGCTCTCCACC
AAAAGGTCCCGCTCGCCCCACACCCGGCCATGTCGTCCTACACCCGCGTGGCGTTGGTGA
CTGGCGCCAACAAGGGCATCGGCTTCGCCATCGCGCGTGATCTGTGCCGGCAGTTCTCGG
GGGATGTGGTGCTCACCTCGCGGGACGCTGCTCGGGGCCGGGCGGCGGTGCAGCAGCTGC
AGGCCGAGGGCCTGAGCCCGCGTTTCCACCAGCTGGACATCGACGACCTGCAGAGCATCC
GCGCCCTGCGCGACTTCCTGCGCAAGGAGTATGGGGGACTCAACGTGCTGGTCAACAACG
CGGGCATCGCTTTCAAGATTGATGATCCAACGCCCTTTGACATTCAAGCTGAGATGACGC
TGAAGACAAACTTTTTTGGCACAAGAAATGTCTGCATCGAATTACTGCCGATCATAAAAC
CTCATGGCAGAGTGGTGAATATCAGTAGTTTGCTGGGTTCCAAAGCCCTTGAAAACTGCA
GCGAGGATCTGCAGGAGAAGTTCCGGTGTGAGGCACTCACAGAGGAAGACCTGGTGGACC
TCATGAAAAAGTTTGTGGAGGATGCAAAAAATGAGGTGCATGAAAGGGAAGGCTGGCCCA
GCTCGGCTTATGGGGTGTCCAAACTGGGGGTCACCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15147860|dbj|BAB62842.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15147860|dbj|BAB62842.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               525-644, + strand, RNAz p=0.654576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-644, + strand, RNAz p=0.654576

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               74-378, gnl|bosTau2|chr1 (96144785-96145090)
               

               
               74-378, gnl|Hg17|chr21 (36364255-36364572)
               

               
               74-378, gnl|Mm7|chr16 (93667443-93667747)
               


               
               486-694, gnl|bosTau2|chr1 (96150621-96150829)
               

               
               486-694, gnl|Hg17|chr21 (36366613-36366821)
               

               
               486-694, gnl|Mm7|chr16 (93669287-93669495)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-378, gnl|bosTau2|chr1 (96144785-96145090)
               

               
               74-378, gnl|Hg17|chr21 (36364255-36364572)
               

               
               74-378, gnl|Mm7|chr16 (93667443-93667747)
               


               
               486-694, gnl|bosTau2|chr1 (96150621-96150829)
               

               
               486-694, gnl|Hg17|chr21 (36366613-36366821)
               

               
               486-694, gnl|Mm7|chr16 (93669287-93669495)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nca (0.273748)
               

               
               nep (0.183925)
               

               
               cli (0.152812)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               nep (0.183925)
               

               
               cli (0.152812)
               

               
               che (0.136314)

	74-378, gnl\|bosTau2\|chr1 (96144785-96145090)
	74-378, gnl\|Hg17\|chr21 (36364255-36364572)
	74-378, gnl\|Mm7\|chr16 (93667443-93667747)

	486-694, gnl\|bosTau2\|chr1 (96150621-96150829)
	486-694, gnl\|Hg17\|chr21 (36366613-36366821)
	486-694, gnl\|Mm7\|chr16 (93669287-93669495)