Non-Coding RNA Search

Ss1.1-LyN1-MLN01F020098.5

Sequence:


               
               GCTGTGCTGAGAAGCCGCGGGTCCGGGGGACTGAGGGAGTGAGCCGTGCGCGCCCGGAGG
CCCCGGGCCGTCGGGCGCGCGTCTTGTCTCCAGCCATGGGTTCGGCAGCGCTGGAAATCC
TCGGCCTCGTGCTGTGCCTGGTGGGCTGGGTAGGCCTGATCCTGGCGTGCGGGCTGCCCA
TGTGGCAGGTAACCGCCTTCCTGGACCACAACATCGTGACGGCGCAGACCACTTGGAAGG
GGCTGTGGATGTCCTGCGTGGTGCAGAGCACGGGGCATATGCAGTGCAAGGTGTACGACT
CGGTGCTGGCGCTGAGCACCGAAGTGCAGGCAGCGCGGGCCCTCACCGTCGGCGCAGTGC
TGCTGGCGCTCGTTGCGCTCTTCGTGACCTTGGCAGGTGCGCAGTGCACCACCTGCGTGG
CCCCCGGCCCGGGCAAGGCACGCGTAGCTCTCACAGGCGGCGCGCTCTACGCGCTCTGCG
GGCTGCTGGCGCTCGTGCCACTCTGCTGGTTCGCCAACATCGTGGTCCGCGAGTTCTACG
ACCCGACTGTGCCCATGTCGCAGAAGTACGAGCTGGGCGCCGCCCTCTACATCGGCTGGG
CCGCCTCGGCGCTGCTCATGTGTGGAGGCGGCCTCGTGTGCTGTGGTGCCTGGCTCTGTG
CCGGCCGCCCCGACCTCGGCTTCCCTGTCAAGTATTCGGCCCCGCGGCGGCCCACGGCCA
CCGGCGACTACGACAAGAAGAACTACGTCTGAGGGTGTCGGGCACAACAGGGCCGCGAGC
TGGACTAGCCAGAGGAACTCCGCTTTGGAGGGCGGCCTTCGCTGGAGTGCGCGGCGCACT
GGCTCCGCAGAACTCCCAGCTCTGTGCCCAGACCAGACTTTGCCCGCACCCCGTCCTCTC
CGGCCGCCGCTGGCCGGCCCTGCTGCCGCGCAAAGCAACGCGCACTTGGGAGGACTCGCT
CGGTTTCTTTTTCTGCGTGCAGTGTTGGCTCCAACGTGGGTAGGGCGTGCGTTCCTTTGG
CTGTGTGGGCACCATACTAAAGATGACGCTCCCTGCCCGACCCTCAGAGTCTCGGATGCC
GGCCACTCCCCAGCGGCTCCTGCTGATTTTAGAGGCAGCGGGAGAGCAGAGAGCGCAGGG
ACCCCAGAGGGAAGCCTACAGCTGGCCTTTATTCCATCATCGGGCTAGCCCCAGGGTAGG
GGCGAGAGACTTGGCCTCACCCTAGCAGTTCCCCAGGCGACAACGCTTATGGGCACCAGA
TCCTGGGTGTGGGGCTGGGGTCCTGCCCTCAGTCACAGCTTGGGGGAAGGGTTAAATCTG
CTTAGTAAATAGTTTGGATACTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGCTGAGAAGCCGCGGGTCCGGGGGACTGAGGGAGTGAGCCGTGCGCGCCCGGAGG
CCCCGGGCCGTCGGGCGCGCGTCTTGTCTCCAGCCATGGGTTCGGCAGCGCTGGAAATCC
TCGGCCTCGTGCTGTGCCTGGTGGGCTGGGTAGGCCTGATCCTGGCGTGCGGGCTGCCCA
TGTGGCAGGTAACCGCCTTCCTGGACCACAACATCGTGACGGCGCAGACCACTTGGAAGG
GGCTGTGGATGTCCTGCGTGGTGCAGAGCACGGGGCATATGCAGTGCAAGGTGTACGACT
CGGTGCTGGCGCTGAGCACCGAAGTGCAGGCAGCGCGGGCCCTCACCGTCGGCGCAGTGC
TGCTGGCGCTCGTTGCGCTCTTCGTGACCTTGGCAGGTGCGCAGTGCACCACCTGCGTGG
CCCCCGGCCCGGGCAAGGCACGCGTAGCTCTCACAGGCGGCGCGCTCTACGCGCTCTGCG
GGCTGCTGGCGCTCGTGCCACTCTGCTGGTTCGCCAACATCGTGGTCCGCGAGTTCTACG
ACCCGACTGTGCCCATGTCGCAGAAGTACGAGCTGGGCGCCGCCCTCTACATCGGCTGGG
CCGCCTCGGCGCTGCTCATGTGTGGAGGCGGCCTCGTGTGCTGTGGTGCCTGGCTCTGTG
CCGGCCGCCCCGACCTCGGCTTCCCTGTCAAGTATTCGGCCCCGCGGCGGCCCACGGCCA
CCGGCGACTACGACAAGAAGAACTACGTCTGAGGGTGTCGGGCACAACAGGGCCGCGAGC
TGGACTAGCCAGAGGAACTCCGCTTTGGAGGGCGGCCTTCGCTGGAGTGCGCGGCGCACT
GGCTCCGCAGAACTCCCAGCTCTGTGCCCAGACCAGACTTTGCCCGCACCCCGTCCTCTC
CGGCCGCCGCTGGCCGGCCCTGCTGCCGCGCAAAGCAACGCGCACTTGGGAGGACTCGCT
CGGTTTCTTTTTCTGCGTGCAGTGTTGGCTCCAACGTGGGTAGGGCGTGCGTTCCTTTGG
CTGTGTGGGCACCATACTAAAGATGACGCTCCCTGCCCGACCCTCAGAGTCTCGGATGCC
GGCCACTCCCCAGCGGCTCCTGCTGATTTTAGAGGCAGCGGGAGAGCAGAGAGCGCAGGG
ACCCCAGAGGGAAGCCTACAGCTGGCCTTTATTCCATCATCGGGCTAGCCCCAGGGTAGG
GGCGAGAGACTTGGCCTCACCCTAGCAGTTCCCCAGGCGACAACGCTTATGGGCACCAGA
TCCTGGGTGTGGGGCTGGGGTCCTGCCCTCAGTCACAGCTTGGGGGAAGGGTTAAATCTG
CTTAGTAAATAGTTTGGATACTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YS66_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YS66_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-151, - strand, RNAz p=0.725403
               

               
               272-391, - strand, RNAz p=0.941524

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-151, - strand, RNAz p=0.725403
               

               
               272-391, - strand, RNAz p=0.941524

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1058, gnl|bosTau2|chr17 (43900912-43899874)
               

               
               1-1058, gnl|Hg17|chr22 (17886476-17885339)
               

               
               1-1058, gnl|Mm7|chr16_random (3263340-3262263)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1058, gnl|bosTau2|chr17 (43900912-43899874)
               

               
               1-1058, gnl|Hg17|chr22 (17886476-17885339)
               

               
               1-1058, gnl|Mm7|chr16_random (3263340-3262263)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               nlu (0.766724)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               eep (0.490256)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               lnt (0.284616)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.766724)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               eep (0.490256)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               cly (0.361925)
               

               
               ebs (0.354904)
               

               
               lnt (0.284616)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)

	38-151, - strand, RNAz p=0.725403
	272-391, - strand, RNAz p=0.941524

	1-1058, gnl\|bosTau2\|chr17 (43900912-43899874)
	1-1058, gnl\|Hg17\|chr22 (17886476-17885339)
	1-1058, gnl\|Mm7\|chr16_random (3263340-3262263)

	nlu (0.766724)
	hyp (0.571347)
	fce (0.543183)
	eep (0.490256)
	nmm (0.398406)
	ute (0.398353)
	fcc (0.39557)
	cly (0.361925)
	ebs (0.354904)
	lnt (0.284616)
	cov (0.264306)
	eru (0.240096)
	ece (0.229305)
	jca (0.22792)
	fbs (0.175346)
	mcp (0.170648)
	csp (0.161186)
	cag (0.151194)
	cbr (0.127975)
	clu (0.119646)