Non-Coding RNA Search

Ss1.1-LyN1-MLN01F030001.5

Sequence:


               
               AGGAGAGAAGGATGGCAGAGATATGTGACCCCAAGGAGCCAGAGGAGAAGACATGGACGG
GGCCAGTATTGGTTGAGCGAGATCTTGGACTACTGCGCAGATTAAGGAACTCACCAGGGT
GTCTGACTTGGCCCCTCCTTCTGCTGCTGCTCTTCGTCTCATTGGGTTTCTTCATGCTCC
TGGTGACCACCCTGGTTCAAGTTTCCAGGATCCACCAGTCTCTGCAGAGAGAGAGAGAGA
CCAGCAGGAGACCCACAGCCCAGGAGAAGATACAATCAAGCCTGGATAAGTTCCTGCAGC
AGATGACCTGGATGAATGCCACCCTGGCTGGCCTGTGCCATCCCTGCCCCTGGCATTGGG
AATTCTTCCAGGGAAGATGCTACTTATTCTCCCAGACCCAGAGTGACTGGAAATCCTCTC
TCTCCGCCTGTAAGGACATTGGGGCCCAGCTGGTTATCATCAATAGCACTGCGGAGCAGA
AATTCCTGAAGTCTTGGTATGTCAGATATAATAAAGCCACCTGGATTGGCCTCAGTGATG
ACACCAATGAAGGTTCCTGGCAATGGGTGGACAACAGCCCCCTCCAACTCAGCTTCTGGA
AAGAAGGAGAACCCAACAATCACGGAGATGAAGACTGTGCAGAATTGCACAACGATGGCT
GGAATGATAGCAAATGTACGGTAGAAAACGCCTGGATCTGTGAGAAGCCCTCGTCTCCCT
GCCCCATGCTCTGAGGGCCACTGCCCAGCCTCCTACTCCCCATCAGCAGAGAATAGGCAA
CAGGCCCTCAGCTGGTTTCCCTTTGGCTCCACCCTCTTCCATCTTTACCCTTTGGTGAAT
TCCCATCCCCTTCTTGAACGACGGTCTTTTAGATCCTACGAGAGATTCTGAAACCCCCTT
ATCCTCGAACCCCTCCTTCCATAGGCTACAAACCCTCTCTCTTCATCTGCAGATGGTCTC
AGCAGCCCCTCCGCCCCGCCCCCCCCATGACATCCCCTTAATAAAGTCACATTGCATTAT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGAGAAGGATGGCAGAGATATGTGACCCCAAGGAGCCAGAGGAGAAGACATGGACGG
GGCCAGTATTGGTTGAGCGAGATCTTGGACTACTGCGCAGATTAAGGAACTCACCAGGGT
GTCTGACTTGGCCCCTCCTTCTGCTGCTGCTCTTCGTCTCATTGGGTTTCTTCATGCTCC
TGGTGACCACCCTGGTTCAAGTTTCCAGGATCCACCAGTCTCTGCAGAGAGAGAGAGAGA
CCAGCAGGAGACCCACAGCCCAGGAGAAGATACAATCAAGCCTGGATAAGTTCCTGCAGC
AGATGACCTGGATGAATGCCACCCTGGCTGGCCTGTGCCATCCCTGCCCCTGGCATTGGG
AATTCTTCCAGGGAAGATGCTACTTATTCTCCCAGACCCAGAGTGACTGGAAATCCTCTC
TCTCCGCCTGTAAGGACATTGGGGCCCAGCTGGTTATCATCAATAGCACTGCGGAGCAGA
AATTCCTGAAGTCTTGGTATGTCAGATATAATAAAGCCACCTGGATTGGCCTCAGTGATG
ACACCAATGAAGGTTCCTGGCAATGGGTGGACAACAGCCCCCTCCAACTCAGCTTCTGGA
AAGAAGGAGAACCCAACAATCACGGAGATGAAGACTGTGCAGAATTGCACAACGATGGCT
GGAATGATAGCAAATGTACGGTAGAAAACGCCTGGATCTGTGAGAAGCCCTCGTCTCCCT
GCCCCATGCTCTGAGGGCCACTGCCCAGCCTCCTACTCCCCATCAGCAGAGAATAGGCAA
CAGGCCCTCAGCTGGTTTCCCTTTGGCTCCACCCTCTTCCATCTTTACCCTTTGGTGAAT
TCCCATCCCCTTCTTGAACGACGGTCTTTTAGATCCTACGAGAGATTCTGAAACCCCCTT
ATCCTCGAACCCCTCCTTCCATAGGCTACAAACCCTCTCTCTTCATCTGCAGATGGTCTC
AGCAGCCCCTCCGCCCCGCCCCCCCCATGACATCCCCTTAATAAAGTCACATTGCATTAT
AAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               322-479, gnl|bosTau2|chr7 (12490983-12490826)
               

               
               322-479, gnl|Hg17|chr19 (7715987-7715827)
               

               
               322-479, gnl|Mm7|chr8 (4068496-4068339)
               


               
               590-745, gnl|bosTau2|chr7 (12489828-12489673)
               

               
               590-745, gnl|Hg17|chr19 (7714129-7713965)
               

               
               590-745, gnl|Mm7|chr8 (4067489-4067334)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               322-479, gnl|bosTau2|chr7 (12490983-12490826)
               

               
               322-479, gnl|Hg17|chr19 (7715987-7715827)
               

               
               322-479, gnl|Mm7|chr8 (4068496-4068339)
               


               
               590-745, gnl|bosTau2|chr7 (12489828-12489673)
               

               
               590-745, gnl|Hg17|chr19 (7714129-7713965)
               

               
               590-745, gnl|Mm7|chr8 (4067489-4067334)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               cly (6.39402)
               

               
               lnt (1.42308)
               

               
               cag (1.20956)
               

               
               jca (1.1396)
               

               
               pty (0.428143)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               pla (0.133672)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (6.39402)
               

               
               lnt (1.42308)
               

               
               cag (1.20956)
               

               
               jca (1.1396)
               

               
               pty (0.428143)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               pla (0.133672)

	322-479, gnl\|bosTau2\|chr7 (12490983-12490826)
	322-479, gnl\|Hg17\|chr19 (7715987-7715827)
	322-479, gnl\|Mm7\|chr8 (4068496-4068339)

	590-745, gnl\|bosTau2\|chr7 (12489828-12489673)
	590-745, gnl\|Hg17\|chr19 (7714129-7713965)
	590-745, gnl\|Mm7\|chr8 (4067489-4067334)

	cly (6.39402)
	lnt (1.42308)
	cag (1.20956)
	jca (1.1396)
	pty (0.428143)
	cga (0.279096)
	nca (0.273748)
	nms (0.213858)
	cty (0.20816)
	tes (0.207814)
	nlu (0.191681)
	ton (0.1755)
	pla (0.133672)