Ss1.1-LyN1-MLN01F030072.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGTGGGGCTCAGAAACCCGCCTCCCCTCCCAGCCTTAGGTGCCTGCTTCGGAAAATG AAGTTATAAGCCAACTGGCCTCCGCCATCTTAAGTAGCATAGTGTCTGCAAGAAAGATGC CGTCGGGGAACCTCTGGAAAGTTCTGGGACTCTGCCTCTTATCAGTTGGCGCTTGGGGAC AAGAAGACATTGAAAGACCAGATGAAGATACACAGAAAACATTTAAAGTCTCCATCTCTG GAGACAAAGTAGAGCTGACATGCCCTGAAGATCCTGAATCTGAAAAAATGACTTGGAAAC GAAATGATATGCAAATATATGAGTCTTATGACAACTACATGTTGTTAGAGAGTTTTTCAG AAGTGGAGAACAGTGGTTATTATACCTGCACAGTCGGAGAGAAGACGAGCCATAGGCTCT ACCTGAAAGCCAGAGTGTGTGAGAACTGCGTGGAGGTGGATCTGATGGCAGTGGTCACAA TCATTGTAGTTGACATCTGCATCACTCTGGGTTTGCTGATGGTGGTGTATTACTACAGCA AGAGTAGAAAGGCCAAGGCCATGCCTGTGACGAGAGGAGCGGGTGCTGGAGGCAGGCCCA GGGGACAAAACAGGGAGAGGCCACCACCTGTCCCCAATCCAGACTATGAGCCCATCCGGA AAGGCCAGCGGGACCTGTATGCTGGCCTGAATCAGAGAGGCAGGTGACAGCTTCCTGAAG ACACTGGCTCCTCTCCAGGCCTGCTATCCCTGCTCCCTGGGCAAATCTTGGACCCCCCTG GAGAATGTCCTCTGCCTTGTGGGGAACTCATACCCTAGAGCTTTGTCCTCCACCACCTCT TTCCTGCCTTCTCTGTTGGCACCCAGCCCAAGGATATTGCTGCCTCATTATCTTTTGAAA CATCATCGCATGGCTACTCACCCCTCACACCTGCCCTGCCTCTTGTCAGGATATTTATTT CTGTTCTTCACACACCTCTTAGTTCCTCCCTTTGGTTCCCTCCTTTTCCTGTGTAAAAGT TGTCCCATCCCTGACTATTCCATCAACATTTCTGTTTCTAGCTCTCTCTTTGGCGACCCT CAGTGGTAAGGGACTGGGTAAATGCTGGCAGAGGTCCTGCCCTGCTCACCAACCCTGGCC CAGAGCTAGCCCTGTGCTCCCTCCCTCCCTCCCTCCACCCCTGGCCCCTGGACATTTGCA TCTCCATAAATGTGCTAGGCTCCTTGTCAGCTGAGAGAGAAAAGAAATAAAGTGTATTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGTGGGGCTCAGAAACCCGCCTCCCCTCCCAGCCTTAGGTGCCTGCTTCGGAAAATG AAGTTATAAGCCAACTGGCCTCCGCCATCTTAAGTAGCATAGTGTCTGCAAGAAAGATGC CGTCGGGGAACCTCTGGAAAGTTCTGGGACTCTGCCTCTTATCAGTTGGCGCTTGGGGAC AAGAAGACATTGAAAGACCAGATGAAGATACACAGAAAACATTTAAAGTCTCCATCTCTG GAGACAAAGTAGAGCTGACATGCCCTGAAGATCCTGAATCTGAAAAAATGACTTGGAAAC GAAATGATATGCAAATATATGAGTCTTATGACAACTACATGTTGTTAGAGAGTTTTTCAG AAGTGGAGAACAGTGGTTATTATACCTGCACAGTCGGAGAGAAGACGAGCCATAGGCTCT ACCTGAAAGCCAGAGTGTGTGAGAACTGCGTGGAGGTGGATCTGATGGCAGTGGTCACAA TCATTGTAGTTGACATCTGCATCACTCTGGGTTTGCTGATGGTGGTGTATTACTACAGCA AGAGTAGAAAGGCCAAGGCCATGCCTGTGACGAGAGGAGCGGGTGCTGGAGGCAGGCCCA GGGGACAAAACAGGGAGAGGCCACCACCTGTCCCCAATCCAGACTATGAGCCCATCCGGA AAGGCCAGCGGGACCTGTATGCTGGCCTGAATCAGAGAGGCAGGTGACAGCTTCCTGAAG ACACTGGCTCCTCTCCAGGCCTGCTATCCCTGCTCCCTGGGCAAATCTTGGACCCCCCTG GAGAATGTCCTCTGCCTTGTGGGGAACTCATACCCTAGAGCTTTGTCCTCCACCACCTCT TTCCTGCCTTCTCTGTTGGCACCCAGCCCAAGGATATTGCTGCCTCATTATCTTTTGAAA CATCATCGCATGGCTACTCACCCCTCACACCTGCCCTGCCTCTTGTCAGGATATTTATTT CTGTTCTTCACACACCTCTTAGTTCCTCCCTTTGGTTCCCTCCTTTTCCTGTGTAAAAGT TGTCCCATCCCTGACTATTCCATCAACATTTCTGTTTCTAGCTCTCTCTTTGGCGACCCT CAGTGGTAAGGGACTGGGTAAATGCTGGCAGAGGTCCTGCCCTGCTCACCAACCCTGGCC CAGAGCTAGCCCTGTGCTCCCTCCCTCCCTCCCTCCACCCCTGGCCCCTGGACATTTGCA TCTCCATAAATGTGCTAGGCTCCTTGTCAGCTGAGAGAGAAAAGAAATAAAGTGTATTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 504-617, + strand, RNAz p=0.971637 | |
| 508-617, + strand, RNAz p=0.997547 | |
| 662-756, - strand, RNAz p=0.985768 | |
| 1078-1169, - strand, RNAz p=0.970206 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 504-617, + strand, RNAz p=0.971637 | |
| 508-617, + strand, RNAz p=0.997547 | |
| 662-756, - strand, RNAz p=0.985768 | |
| 1078-1169, - strand, RNAz p=0.970206 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 60-168, gnl|bosTau2|chr15 (15204989-15204877) | |
| 60-168, gnl|canFam2|chr5 (18421547-18421152) | |
| 60-168, gnl|echTel1|scaffold_287748 (90977-90611) | |
| 60-168, gnl|hg17|chr11 (117680698-117681113) | |
| 60-168, gnl|Hg17|chr11 (117680818-117680929) | |
| 60-168, gnl|loxAfr1|scaffold_17764 (24420-24006) | |
| 60-168, gnl|mm7|chr9 (44943916-44943537) | |
| 60-168, gnl|Mm7|chr9 (44943795-44943690) | |
| 60-168, gnl|monDom2|scaffold_2 (120393869-120393456) | |
| 60-168, gnl|oryCun1|scaffold_207575 (400-776) | |
| 60-168, gnl|panTro1|chr9 (119690907-119691318) | |
| 60-168, gnl|rheMac2|chr14 (116686486-116686901) | |
| 60-168, gnl|rn3|chr8 (47967133-47966709) | |
| 431-617, gnl|bosTau2|chr15 (15196500-15196314) | |
| 431-617, gnl|canFam2|chr5 (18412320-18411968) | |
| 431-617, gnl|dasNov1|scaffold_1088 (127972-128315) | |
| 431-617, gnl|echTel1|scaffold_287748 (78577-78218) | |
| 431-617, gnl|hg17|chr11 (117689508-117689857) | |
| 431-617, gnl|Hg17|chr11 (117689627-117689824) | |
| 431-617, gnl|loxAfr1|scaffold_147403 (4840-4501) | |
| 431-617, gnl|mm7|chr9 (44935626-44935286) | |
| 431-617, gnl|Mm7|chr9 (44935498-44935310) | |
| 431-617, gnl|monDom2|scaffold_2 (120386940-120386560) | |
| 431-617, gnl|oryCun1|scaffold_207575 (12191-12525) | |
| 431-617, gnl|panTro1|chr9 (119699680-119700029) | |
| 431-617, gnl|rheMac2|chr14 (116695227-116695576) | |
| 431-617, gnl|rn3|chr8 (47958221-47957887) | |
| 623-971, gnl|bosTau2|chr15 (15195224-15194861) | |
| 623-971, gnl|canFam2|chr5 (18410605-18410106) | |
| 623-971, gnl|dasNov1|scaffold_1088 (129574-130161) | |
| 623-971, gnl|echTel1|scaffold_57687 (550-128) | |
| 623-971, gnl|hg17|chr11 (117691350-117691831) | |
| 623-971, gnl|Hg17|chr11 (117691384-117691751) | |
| 623-971, gnl|mm7|chr9 (44933993-44933534) | |
| 623-971, gnl|Mm7|chr9 (44933957-44933592) | |
| 623-971, gnl|monDom2|scaffold_2 (120385370-120384784) | |
| 623-971, gnl|panTro1|chr9 (119701508-119701987) | |
| 623-971, gnl|rheMac2|chr14 (116697061-116697544) | |
| 623-971, gnl|rn3|chr8 (47956698-47956248) | |
| 987-1260, gnl|bosTau2|chr15 (15194816-15194537) | |
| 987-1260, gnl|Hg17|chr11 (117691776-117692091) | |
| 987-1260, gnl|Mm7|chr9 (44933469-44933093) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-168, gnl|bosTau2|chr15 (15204989-15204877) | |
| 60-168, gnl|canFam2|chr5 (18421547-18421152) | |
| 60-168, gnl|echTel1|scaffold_287748 (90977-90611) | |
| 60-168, gnl|hg17|chr11 (117680698-117681113) | |
| 60-168, gnl|Hg17|chr11 (117680818-117680929) | |
| 60-168, gnl|loxAfr1|scaffold_17764 (24420-24006) | |
| 60-168, gnl|mm7|chr9 (44943916-44943537) | |
| 60-168, gnl|Mm7|chr9 (44943795-44943690) | |
| 60-168, gnl|monDom2|scaffold_2 (120393869-120393456) | |
| 60-168, gnl|oryCun1|scaffold_207575 (400-776) | |
| 60-168, gnl|panTro1|chr9 (119690907-119691318) | |
| 60-168, gnl|rheMac2|chr14 (116686486-116686901) | |
| 60-168, gnl|rn3|chr8 (47967133-47966709) | |
| 431-617, gnl|bosTau2|chr15 (15196500-15196314) | |
| 431-617, gnl|canFam2|chr5 (18412320-18411968) | |
| 431-617, gnl|dasNov1|scaffold_1088 (127972-128315) | |
| 431-617, gnl|echTel1|scaffold_287748 (78577-78218) | |
| 431-617, gnl|hg17|chr11 (117689508-117689857) | |
| 431-617, gnl|Hg17|chr11 (117689627-117689824) | |
| 431-617, gnl|loxAfr1|scaffold_147403 (4840-4501) | |
| 431-617, gnl|mm7|chr9 (44935626-44935286) | |
| 431-617, gnl|Mm7|chr9 (44935498-44935310) | |
| 431-617, gnl|monDom2|scaffold_2 (120386940-120386560) | |
| 431-617, gnl|oryCun1|scaffold_207575 (12191-12525) | |
| 431-617, gnl|panTro1|chr9 (119699680-119700029) | |
| 431-617, gnl|rheMac2|chr14 (116695227-116695576) | |
| 431-617, gnl|rn3|chr8 (47958221-47957887) | |
| 623-971, gnl|bosTau2|chr15 (15195224-15194861) | |
| 623-971, gnl|canFam2|chr5 (18410605-18410106) | |
| 623-971, gnl|dasNov1|scaffold_1088 (129574-130161) | |
| 623-971, gnl|echTel1|scaffold_57687 (550-128) | |
| 623-971, gnl|hg17|chr11 (117691350-117691831) | |
| 623-971, gnl|Hg17|chr11 (117691384-117691751) | |
| 623-971, gnl|mm7|chr9 (44933993-44933534) | |
| 623-971, gnl|Mm7|chr9 (44933957-44933592) | |
| 623-971, gnl|monDom2|scaffold_2 (120385370-120384784) | |
| 623-971, gnl|panTro1|chr9 (119701508-119701987) | |
| 623-971, gnl|rheMac2|chr14 (116697061-116697544) | |
| 623-971, gnl|rn3|chr8 (47956698-47956248) | |
| 987-1260, gnl|bosTau2|chr15 (15194816-15194537) | |
| 987-1260, gnl|Hg17|chr11 (117691776-117692091) | |
| 987-1260, gnl|Mm7|chr9 (44933469-44933093) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fty (0.703359) | |
| med (0.697512) | |
| csp (0.483559) | |
| jej (0.395687) | |
| cly (0.361925) | |
| clu (0.239292) | |
| ill (0.175593) | |
| cag (0.151194) | |
| thg (0.126791) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.703359) | |
| med (0.697512) | |
| csp (0.483559) | |
| jej (0.395687) | |
| cly (0.361925) | |
| clu (0.239292) | |
| ill (0.175593) | |
| cag (0.151194) | |
| thg (0.126791) |