Non-Coding RNA Search

Ss1.1-LyN1-MLN01F040039.5

Sequence:


               
               CTCGGCACTCCTTCGCGACGATTCGGCCGGGTGCCGCTGGCGGCCGTTGCCAGGGTGGGG
GTCGCTTTGCGGCATGGCGATGGCGGAGGGCGAGCGGACTGAGTGTGCTGAGCCCCCCCG
GGACGAGCCCCCGGCTGATGGCGCGCTGAAGCGGGCAGAGGAGCTCAAGACGCAGGCCAA
CGACTACTTCAAAGCCAAGGACTACGAGAACGCCATCAAGTTCTACAGTCAGGCCATAGA
GCTGAACCCAAGCAATGCCATCTACTATGGCAACCGCAGCCTGGCCTACCTGCGCACCGA
GTGCTACGGCTACGCGCTGGCCGACGCCACACGGGCCATCGAGATGGACAAGAAGTACAT
CAAGGGTTACTACCGCCGCGCAGCCAGCAACATGGCCCTGGGCAAGTTCCGGGCCGCCCT
GCGCGACTACCAGACGGTGGTGAAGGTGAAGCCCCACGACAAGGACGCCAAGATGAAGTA
CCAGGAATGCAACAAGATCGTGAAGCAGAAAGCCTTCGAGCGGGCCATTGCAGGTGATGA
GCACAAGCGCTCCGTCGTGGACTCACTCGACATCGAGAGCATGACCATCGAGGATGAGTA
CAGCGGGCCCAAGCTGGAGGACGGCCGAGTGACAGCCACCTTCATGAAGGAGCTCATGCA
GTGGTACAAGGACCAGAAGAAACTGCACCGGAAGTGCGCCTACCAGATCCTGGTACAGGT
CAAAGAGGTCCTCTCTAAGCTGAGCACGCTGGTGGAGACCACACTCAAAGAGACAGAGAA
GATTACAGTGTGCGGGGACACCCACGGCCAGTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCACTCCTTCGCGACGATTCGGCCGGGTGCCGCTGGCGGCCGTTGCCAGGGTGGGG
GTCGCTTTGCGGCATGGCGATGGCGGAGGGCGAGCGGACTGAGTGTGCTGAGCCCCCCCG
GGACGAGCCCCCGGCTGATGGCGCGCTGAAGCGGGCAGAGGAGCTCAAGACGCAGGCCAA
CGACTACTTCAAAGCCAAGGACTACGAGAACGCCATCAAGTTCTACAGTCAGGCCATAGA
GCTGAACCCAAGCAATGCCATCTACTATGGCAACCGCAGCCTGGCCTACCTGCGCACCGA
GTGCTACGGCTACGCGCTGGCCGACGCCACACGGGCCATCGAGATGGACAAGAAGTACAT
CAAGGGTTACTACCGCCGCGCAGCCAGCAACATGGCCCTGGGCAAGTTCCGGGCCGCCCT
GCGCGACTACCAGACGGTGGTGAAGGTGAAGCCCCACGACAAGGACGCCAAGATGAAGTA
CCAGGAATGCAACAAGATCGTGAAGCAGAAAGCCTTCGAGCGGGCCATTGCAGGTGATGA
GCACAAGCGCTCCGTCGTGGACTCACTCGACATCGAGAGCATGACCATCGAGGATGAGTA
CAGCGGGCCCAAGCTGGAGGACGGCCGAGTGACAGCCACCTTCATGAAGGAGCTCATGCA
GTGGTACAAGGACCAGAAGAAACTGCACCGGAAGTGCGCCTACCAGATCCTGGTACAGGT
CAAAGAGGTCCTCTCTAAGCTGAGCACGCTGGTGGAGACCACACTCAAAGAGACAGAGAA
GATTACAGTGTGCGGGGACACCCACGGCCAGTTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3212250|pdb|1A17|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3212250|pdb|1A17|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               187-345, - strand, RNAz p=0.982214
               

               
               187-282, - strand, RNAz p=0.831648

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-345, - strand, RNAz p=0.982214
               

               
               187-282, - strand, RNAz p=0.831648

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               187-439, gnl|bosTau2|chr18 (49862647-49862395)
               

               
               187-439, gnl|canFam2|chr1 (112352303-112352027)
               

               
               187-439, gnl|danRer3|chr15 (27452504-27452247)
               

               
               187-439, gnl|dasNov1|scaffold_91823 (2401-2676)
               

               
               187-439, gnl|echTel1|scaffold_113073 (205-475)
               

               
               187-439, gnl|fr1|chrUn (97631317-97631583)
               

               
               187-439, gnl|hg17|chr19 (51548819-51549092)
               

               
               187-439, gnl|Hg17|chr19 (51548837-51549089)
               

               
               187-439, gnl|loxAfr1|scaffold_156098 (386-111)
               

               
               187-439, gnl|mm7|chr7 (14786259-14785987)
               

               
               187-439, gnl|Mm7|chr7 (14786238-14785988)
               

               
               187-439, gnl|monDom2|scaffold_1486 (1866-1597)
               

               
               187-439, gnl|panTro1|chr20 (48824993-48825266)
               

               
               187-439, gnl|rheMac2|chr19 (52712731-52713004)
               

               
               187-439, gnl|rn3|chr1 (77442328-77442056)
               

               
               187-439, gnl|tetNig1|chr16 (6265316-6265565)
               

               
               187-439, gnl|xenTro1|scaffold_105 (1211470-1211729)
               


               
               585-706, gnl|bosTau2|chr18 (49855893-49855772)
               

               
               585-706, gnl|Hg17|chr19 (51571550-51571671)
               

               
               585-706, gnl|Mm7|chr7 (14773572-14773451)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-439, gnl|bosTau2|chr18 (49862647-49862395)
               

               
               187-439, gnl|canFam2|chr1 (112352303-112352027)
               

               
               187-439, gnl|danRer3|chr15 (27452504-27452247)
               

               
               187-439, gnl|dasNov1|scaffold_91823 (2401-2676)
               

               
               187-439, gnl|echTel1|scaffold_113073 (205-475)
               

               
               187-439, gnl|fr1|chrUn (97631317-97631583)
               

               
               187-439, gnl|hg17|chr19 (51548819-51549092)
               

               
               187-439, gnl|Hg17|chr19 (51548837-51549089)
               

               
               187-439, gnl|loxAfr1|scaffold_156098 (386-111)
               

               
               187-439, gnl|mm7|chr7 (14786259-14785987)
               

               
               187-439, gnl|Mm7|chr7 (14786238-14785988)
               

               
               187-439, gnl|monDom2|scaffold_1486 (1866-1597)
               

               
               187-439, gnl|panTro1|chr20 (48824993-48825266)
               

               
               187-439, gnl|rheMac2|chr19 (52712731-52713004)
               

               
               187-439, gnl|rn3|chr1 (77442328-77442056)
               

               
               187-439, gnl|tetNig1|chr16 (6265316-6265565)
               

               
               187-439, gnl|xenTro1|scaffold_105 (1211470-1211729)
               


               
               585-706, gnl|bosTau2|chr18 (49855893-49855772)
               

               
               585-706, gnl|Hg17|chr19 (51571550-51571671)
               

               
               585-706, gnl|Mm7|chr7 (14773572-14773451)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               eje (0.0988338)

	187-345, - strand, RNAz p=0.982214
	187-282, - strand, RNAz p=0.831648

	187-439, gnl\|bosTau2\|chr18 (49862647-49862395)
	187-439, gnl\|canFam2\|chr1 (112352303-112352027)
	187-439, gnl\|danRer3\|chr15 (27452504-27452247)
	187-439, gnl\|dasNov1\|scaffold_91823 (2401-2676)
	187-439, gnl\|echTel1\|scaffold_113073 (205-475)
	187-439, gnl\|fr1\|chrUn (97631317-97631583)
	187-439, gnl\|hg17\|chr19 (51548819-51549092)
	187-439, gnl\|Hg17\|chr19 (51548837-51549089)
	187-439, gnl\|loxAfr1\|scaffold_156098 (386-111)
	187-439, gnl\|mm7\|chr7 (14786259-14785987)
	187-439, gnl\|Mm7\|chr7 (14786238-14785988)
	187-439, gnl\|monDom2\|scaffold_1486 (1866-1597)
	187-439, gnl\|panTro1\|chr20 (48824993-48825266)
	187-439, gnl\|rheMac2\|chr19 (52712731-52713004)
	187-439, gnl\|rn3\|chr1 (77442328-77442056)
	187-439, gnl\|tetNig1\|chr16 (6265316-6265565)
	187-439, gnl\|xenTro1\|scaffold_105 (1211470-1211729)

	585-706, gnl\|bosTau2\|chr18 (49855893-49855772)
	585-706, gnl\|Hg17\|chr19 (51571550-51571671)
	585-706, gnl\|Mm7\|chr7 (14773572-14773451)