Ss1.1-LyN1-MLN01F050023.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTCCGCAGCTGTCTGTGACACCCGGAGCCCGCGGGTCGCCTCGGCCCCCAGAGACCCC GGCATGGTGCGCGCGGGCGCTGTGGGGTCGCATCTCCCCACGTCCGGTTTGGACATCTTT GGGGACCTGAGGAAGATGAACAAGCGCCAGCTCTATTACCAGGTCTTAAACTTCGCCATG ATCGTGTCTTCTGCGCTCATGATCTGGAAAGGCTTGATTGTCCTCACTGGCAGCGAGAGC CCCATCGTCGTGGTGCTAAGTGGCAGCATGGAGCCAGCCTTTCACAGGGGCGACCTTCTG TTCCTAACAAATTTCCGGGAAGACCCGATTAGAGCTGGTGAAATTGTTGTTTTTAAAGTT GAAGGACGAGACATTCCAATAGTTCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGA GACATCAAATTTCTGACTAAAGGAGATAATAACGAAGTTGACGATAGAGGCTTGTACAAA GAAGGGCAAAACTGGCTCGAAAAGAAGGACGTGGTGGGAAGAGCCAGAGGGTTTTTACCG TATGTTGGCATGGTCACCATAATAATGAATGATTACCCAAAATTCAAGTATGCTCTTCTG GCTGTAATGGGTGCCTATGTGTTACTAAAACGTGAATCCTAAGATGAAAAGCAGTTCCTG GGACCAGACCGAACTGCTAAAAAAGAGAAAAACTAATATATTTGAAATGTTCCACTTTCT GTATAAAAGGGAACAATGTGGAGACATTTTTGTCTTGTTCAAATAAATGATTCATCAGGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTCCGCAGCTGTCTGTGACACCCGGAGCCCGCGGGTCGCCTCGGCCCCCAGAGACCCC GGCATGGTGCGCGCGGGCGCTGTGGGGTCGCATCTCCCCACGTCCGGTTTGGACATCTTT GGGGACCTGAGGAAGATGAACAAGCGCCAGCTCTATTACCAGGTCTTAAACTTCGCCATG ATCGTGTCTTCTGCGCTCATGATCTGGAAAGGCTTGATTGTCCTCACTGGCAGCGAGAGC CCCATCGTCGTGGTGCTAAGTGGCAGCATGGAGCCAGCCTTTCACAGGGGCGACCTTCTG TTCCTAACAAATTTCCGGGAAGACCCGATTAGAGCTGGTGAAATTGTTGTTTTTAAAGTT GAAGGACGAGACATTCCAATAGTTCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGA GACATCAAATTTCTGACTAAAGGAGATAATAACGAAGTTGACGATAGAGGCTTGTACAAA GAAGGGCAAAACTGGCTCGAAAAGAAGGACGTGGTGGGAAGAGCCAGAGGGTTTTTACCG TATGTTGGCATGGTCACCATAATAATGAATGATTACCCAAAATTCAAGTATGCTCTTCTG GCTGTAATGGGTGCCTATGTGTTACTAAAACGTGAATCCTAAGATGAAAAGCAGTTCCTG GGACCAGACCGAACTGCTAAAAAAGAGAAAAACTAATATATTTGAAATGTTCCACTTTCT GTATAAAAGGGAACAATGTGGAGACATTTTTGTCTTGTTCAAATAAATGATTCATCAGGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 147-260, gnl|bosTau2|chr24 (41943925-41944038) | |
| 147-260, gnl|canFam2|chr1 (20038253-20038132) | |
| 147-260, gnl|danRer3|chrUn (51944107-51943991) | |
| 147-260, gnl|dasNov1|scaffold_41719 (46062-45941) | |
| 147-260, gnl|echTel1|scaffold_303452 (70397-70275) | |
| 147-260, gnl|fr1|chrUn (311616055-311615938) | |
| 147-260, gnl|galGal2|chrUn (4675150-4675031) | |
| 147-260, gnl|hg17|chr18 (54967722-54967844) | |
| 147-260, gnl|Hg17|chr18 (54967721-54967834) | |
| 147-260, gnl|loxAfr1|scaffold_6788 (57217-57095) | |
| 147-260, gnl|mm7|chr18 (66198514-66198636) | |
| 147-260, gnl|Mm7|chr18 (66198513-66198626) | |
| 147-260, gnl|monDom2|scaffold_20 (42592744-42592625) | |
| 147-260, gnl|oryCun1|scaffold_195223 (79750-79639) | |
| 147-260, gnl|panTro1|chr17 (51869646-51869768) | |
| 147-260, gnl|rheMac2|chr18 (52432439-52432561) | |
| 147-260, gnl|rn3|chr18 (62178191-62178313) | |
| 147-260, gnl|tetNig1|chr5 (2455562-2455680) | |
| 147-260, gnl|xenTro1|scaffold_206 (513808-513930) | |
| 301-768, gnl|bosTau2|chr14 (40958845-40958381) | |
| 301-768, gnl|Hg17|chr18 (54970788-54977029) | |
| 301-768, gnl|Mm7|chr18 (66201777-66206718) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-260, gnl|bosTau2|chr24 (41943925-41944038) | |
| 147-260, gnl|canFam2|chr1 (20038253-20038132) | |
| 147-260, gnl|danRer3|chrUn (51944107-51943991) | |
| 147-260, gnl|dasNov1|scaffold_41719 (46062-45941) | |
| 147-260, gnl|echTel1|scaffold_303452 (70397-70275) | |
| 147-260, gnl|fr1|chrUn (311616055-311615938) | |
| 147-260, gnl|galGal2|chrUn (4675150-4675031) | |
| 147-260, gnl|hg17|chr18 (54967722-54967844) | |
| 147-260, gnl|Hg17|chr18 (54967721-54967834) | |
| 147-260, gnl|loxAfr1|scaffold_6788 (57217-57095) | |
| 147-260, gnl|mm7|chr18 (66198514-66198636) | |
| 147-260, gnl|Mm7|chr18 (66198513-66198626) | |
| 147-260, gnl|monDom2|scaffold_20 (42592744-42592625) | |
| 147-260, gnl|oryCun1|scaffold_195223 (79750-79639) | |
| 147-260, gnl|panTro1|chr17 (51869646-51869768) | |
| 147-260, gnl|rheMac2|chr18 (52432439-52432561) | |
| 147-260, gnl|rn3|chr18 (62178191-62178313) | |
| 147-260, gnl|tetNig1|chr5 (2455562-2455680) | |
| 147-260, gnl|xenTro1|scaffold_206 (513808-513930) | |
| 301-768, gnl|bosTau2|chr14 (40958845-40958381) | |
| 301-768, gnl|Hg17|chr18 (54970788-54977029) | |
| 301-768, gnl|Mm7|chr18 (66201777-66206718) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| sag (1.64444) | |
| pro (1.02407) | |
| lyg (0.931718) | |
| sug (0.763747) | |
| mgm (0.721371) | |
| pan (0.707881) | |
| csk (0.70373) | |
| mga (0.64082) | |
| tes (0.623441) | |
| bla (0.621736) | |
| lun (0.601956) | |
| spc (0.566829) | |
| sin (0.524843) | |
| duo (0.518403) | |
| ece (0.45861) | |
| nlu (0.383362) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| ski (0.29347) | |
| cte (0.29274) | |
| nca (0.273748) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (1.64444) | |
| pro (1.02407) | |
| lyg (0.931718) | |
| sug (0.763747) | |
| mgm (0.721371) | |
| pan (0.707881) | |
| csk (0.70373) | |
| mga (0.64082) | |
| tes (0.623441) | |
| bla (0.621736) | |
| lun (0.601956) | |
| spc (0.566829) | |
| sin (0.524843) | |
| duo (0.518403) | |
| ece (0.45861) | |
| nlu (0.383362) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| ski (0.29347) | |
| cte (0.29274) | |
| nca (0.273748) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |