Ss1.1-LyN1-MLN01F050053.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCTCTATATGAGGTTGGGGAGCGGCAGAGTCGGCTTTTTCCGCCCGCTCCCCCCTCC CCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTCTGAGCTCCCGGTTCCTGCTAAGCTA GCGCCGCCGTCGTCTCCCTCCAGCCGCCATCATGATCATCTACCGGGACCTCATCAGCCA TGATGAGATGTTTTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCTGTGTCTGGA GGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTCATTGGTGG AAATGCCTCCGCTGAAGGGCCCGAGGGCGAAGGTACCGAAAGCACAGTAATCACTGGTGT CGATATTGTCATGAACCATCACCTGCAGGAAACCAGCTTCACAAAGGAAGCCTACAAGAA GTACATCAAAGATTATATGAAGTCAATCAAAGGGAAACTCGAAGAACAGAGACCAGAAAG AGTAAAACCTTTTATGACAGGAGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAA AAACTATCAGTTCTTTATTGGTGAAAACATGAATCCAGACGGCATGGTTGCTCTGCTGGA CTACCGTGAGGATGGTGTGACTCCATATATGATTTTCTTTAAGGATGGCTTAGAAATGGA AAAATGTTAACAAATTTGGCTGTTGGGATCGGATCTATCACCCGTCGTCATAACTGGCTG GCCACTGCTTTCCATCCACAAAACACCAGGACTTAGACAAGTGGGACTGATGGCATCTTG AGCTCGTTATTTTGACATTGATTTTTCTTTGGAGCGGAGGCATTGTTTTTGAGGAAAAAA ACATGTCATGTAGGTTGTCTAAAAATAAAATGCATTTAAACTCAAAAAAAAAAAAAAAAA AGTTTAATATGTAATACCTAAATCATGCTGTGTAGCCTTCCTGGAGAAGCTACAACCTGT AGACCACAACTAGAAAGCCTAAGACCATCTTCAGATAACTTCTGCAGTTGAAAACTACTT CCCGGACTTGGAATATAAACAAGAATCAAAATAATTGAGTTGAAGGGAGAGACCATGGTC ATAGCAGTGCCAACACCTGAAGTGGATTCCTTACACTTTCATCACCTACAAACGAAGAGA TTAACCAAAAGAATAAAAAGACTAATACAGTTGCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCTCTATATGAGGTTGGGGAGCGGCAGAGTCGGCTTTTTCCGCCCGCTCCCCCCTCC CCCCGAGCGCCGCTCCGGCTGCACCGCGCTCGCTCTGAGCTCCCGGTTCCTGCTAAGCTA GCGCCGCCGTCGTCTCCCTCCAGCCGCCATCATGATCATCTACCGGGACCTCATCAGCCA TGATGAGATGTTTTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCTGTGTCTGGA GGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTCATTGGTGG AAATGCCTCCGCTGAAGGGCCCGAGGGCGAAGGTACCGAAAGCACAGTAATCACTGGTGT CGATATTGTCATGAACCATCACCTGCAGGAAACCAGCTTCACAAAGGAAGCCTACAAGAA GTACATCAAAGATTATATGAAGTCAATCAAAGGGAAACTCGAAGAACAGAGACCAGAAAG AGTAAAACCTTTTATGACAGGAGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCAA AAACTATCAGTTCTTTATTGGTGAAAACATGAATCCAGACGGCATGGTTGCTCTGCTGGA CTACCGTGAGGATGGTGTGACTCCATATATGATTTTCTTTAAGGATGGCTTAGAAATGGA AAAATGTTAACAAATTTGGCTGTTGGGATCGGATCTATCACCCGTCGTCATAACTGGCTG GCCACTGCTTTCCATCCACAAAACACCAGGACTTAGACAAGTGGGACTGATGGCATCTTG AGCTCGTTATTTTGACATTGATTTTTCTTTGGAGCGGAGGCATTGTTTTTGAGGAAAAAA ACATGTCATGTAGGTTGTCTAAAAATAAAATGCATTTAAACTCAAAAAAAAAAAAAAAAA AGTTTAATATGTAATACCTAAATCATGCTGTGTAGCCTTCCTGGAGAAGCTACAACCTGT AGACCACAACTAGAAAGCCTAAGACCATCTTCAGATAACTTCTGCAGTTGAAAACTACTT CCCGGACTTGGAATATAAACAAGAATCAAAATAATTGAGTTGAAGGGAGAGACCATGGTC ATAGCAGTGCCAACACCTGAAGTGGATTCCTTACACTTTCATCACCTACAAACGAAGAGA TTAACCAAAAGAATAAAAAGACTAATACAGTTGCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 51-203, gnl|bosTau2|chr1 (79614735-79614889) | |
| 51-203, gnl|Hg17|chrX (71162618-71162795) | |
| 51-203, gnl|Mm7|chr6 (99966490-99966357) | |
| 52-183, gnl|bosTau2|chr12 (5699489-5699621) | |
| 52-183, gnl|canFam2|chr22 (8654885-8654762) | |
| 52-183, gnl|canFam2|chr22 (8654882-8654740) | |
| 52-183, gnl|canFam2|chr22 (8654881-8654793) | |
| 52-183, gnl|canFam2|chr22 (8654880-8654741) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6186-6317) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6189-6338) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6189-6275) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6191-6337) | |
| 52-183, gnl|echTel1|scaffold_155415 (2961-3102) | |
| 52-183, gnl|echTel1|scaffold_155415 (2961-3050) | |
| 52-183, gnl|echTel1|scaffold_155415 (2963-3102) | |
| 52-183, gnl|echTel1|scaffold_315971 (46721-46837) | |
| 52-183, gnl|hg17|chr10 (59642777-59642870) | |
| 52-183, gnl|hg17|chr12 (9200268-9200391) | |
| 52-183, gnl|Hg17|chr13 (44813305-44813173) | |
| 52-183, gnl|hg17|chr2 (48772120-48772272) | |
| 52-183, gnl|hg17|chrX (14756218-14756368) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9388-9265) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9385-9244) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9385-9296) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9383-9231) | |
| 52-183, gnl|Mm7|chr14 (70525694-70525810) | |
| 52-183, gnl|mm7|chr6 (99966379-99966486) | |
| 52-183, gnl|mm7|chr6 (99966382-99966507) | |
| 52-183, gnl|mm7|chr6 (99966382-99966455) | |
| 52-183, gnl|mm7|chr6 (99966384-99966511) | |
| 52-183, gnl|monDom2|scaffold_35 (25496820-25496945) | |
| 52-183, gnl|monDom2|scaffold_35 (25496823-25496951) | |
| 52-183, gnl|monDom2|scaffold_35 (18296243-18296152) | |
| 52-183, gnl|monDom2|scaffold_35 (18296241-18296092) | |
| 52-183, gnl|oryCun1|scaffold_208333 (72389-72515) | |
| 52-183, gnl|oryCun1|scaffold_208333 (72392-72484) | |
| 52-183, gnl|oryCun1|scaffold_208333 (72394-72544) | |
| 52-183, gnl|panTro1|chr12 (50842258-50842411) | |
| 52-183, gnl|panTro1|chr8 (60459596-60459689) | |
| 52-183, gnl|panTro1|chrUn_random (57899579-57899456) | |
| 52-183, gnl|panTro1|chrX_random (24607386-24607513) | |
| 52-183, gnl|rheMac2|chr11 (9302064-9302192) | |
| 52-183, gnl|rheMac2|chr9 (112870342-112870236) | |
| 52-183, gnl|rheMac2|chr9 (79113599-79113506) | |
| 52-183, gnl|rheMac2|chrX (12718653-12718798) | |
| 52-183, gnl|rn3|chr1 (19563523-19563417) | |
| 52-183, gnl|rn3|chr1 (19563520-19563448) | |
| 52-183, gnl|rn3|chr1 (19563518-19563395) | |
| 52-183, gnl|rn3|chr7 (136232499-136232623) | |
| 265-908, gnl|bosTau2|chr11 (58762237-58762842) | |
| 265-908, gnl|Hg17|chr2 (21333405-21332772) | |
| 265-908, gnl|Mm7|chr12 (7789588-7790545) | |
| 346-737, gnl|bosTau2|chr10 (45753393-45753003) | |
| 346-737, gnl|Mm7|chr6 (99966214-99965841) | |
| 745-901, gnl|bosTau2|chr10 (45753391-45753546) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-203, gnl|bosTau2|chr1 (79614735-79614889) | |
| 51-203, gnl|Hg17|chrX (71162618-71162795) | |
| 51-203, gnl|Mm7|chr6 (99966490-99966357) | |
| 52-183, gnl|bosTau2|chr12 (5699489-5699621) | |
| 52-183, gnl|canFam2|chr22 (8654885-8654762) | |
| 52-183, gnl|canFam2|chr22 (8654882-8654740) | |
| 52-183, gnl|canFam2|chr22 (8654881-8654793) | |
| 52-183, gnl|canFam2|chr22 (8654880-8654741) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6186-6317) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6189-6338) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6189-6275) | |
| 52-183, gnl|dasNov1|scaffold_44318 (6191-6337) | |
| 52-183, gnl|echTel1|scaffold_155415 (2961-3102) | |
| 52-183, gnl|echTel1|scaffold_155415 (2961-3050) | |
| 52-183, gnl|echTel1|scaffold_155415 (2963-3102) | |
| 52-183, gnl|echTel1|scaffold_315971 (46721-46837) | |
| 52-183, gnl|hg17|chr10 (59642777-59642870) | |
| 52-183, gnl|hg17|chr12 (9200268-9200391) | |
| 52-183, gnl|Hg17|chr13 (44813305-44813173) | |
| 52-183, gnl|hg17|chr2 (48772120-48772272) | |
| 52-183, gnl|hg17|chrX (14756218-14756368) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9388-9265) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9385-9244) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9385-9296) | |
| 52-183, gnl|loxAfr1|scaffold_34406 (9383-9231) | |
| 52-183, gnl|Mm7|chr14 (70525694-70525810) | |
| 52-183, gnl|mm7|chr6 (99966379-99966486) | |
| 52-183, gnl|mm7|chr6 (99966382-99966507) | |
| 52-183, gnl|mm7|chr6 (99966382-99966455) | |
| 52-183, gnl|mm7|chr6 (99966384-99966511) | |
| 52-183, gnl|monDom2|scaffold_35 (25496820-25496945) | |
| 52-183, gnl|monDom2|scaffold_35 (25496823-25496951) | |
| 52-183, gnl|monDom2|scaffold_35 (18296243-18296152) | |
| 52-183, gnl|monDom2|scaffold_35 (18296241-18296092) | |
| 52-183, gnl|oryCun1|scaffold_208333 (72389-72515) | |
| 52-183, gnl|oryCun1|scaffold_208333 (72392-72484) | |
| 52-183, gnl|oryCun1|scaffold_208333 (72394-72544) | |
| 52-183, gnl|panTro1|chr12 (50842258-50842411) | |
| 52-183, gnl|panTro1|chr8 (60459596-60459689) | |
| 52-183, gnl|panTro1|chrUn_random (57899579-57899456) | |
| 52-183, gnl|panTro1|chrX_random (24607386-24607513) | |
| 52-183, gnl|rheMac2|chr11 (9302064-9302192) | |
| 52-183, gnl|rheMac2|chr9 (112870342-112870236) | |
| 52-183, gnl|rheMac2|chr9 (79113599-79113506) | |
| 52-183, gnl|rheMac2|chrX (12718653-12718798) | |
| 52-183, gnl|rn3|chr1 (19563523-19563417) | |
| 52-183, gnl|rn3|chr1 (19563520-19563448) | |
| 52-183, gnl|rn3|chr1 (19563518-19563395) | |
| 52-183, gnl|rn3|chr7 (136232499-136232623) | |
| 265-908, gnl|bosTau2|chr11 (58762237-58762842) | |
| 265-908, gnl|Hg17|chr2 (21333405-21332772) | |
| 265-908, gnl|Mm7|chr12 (7789588-7790545) | |
| 346-737, gnl|bosTau2|chr10 (45753393-45753003) | |
| 346-737, gnl|Mm7|chr6 (99966214-99965841) | |
| 745-901, gnl|bosTau2|chr10 (45753391-45753546) |
| Expressed library(ies): 98 entry(ies) | More info |
| Expressed library(ies): 98 entry(ies) | Help | Less info |
| isp (90.0752) | |
| sme (80.0244) | |
| cmu (76.0485) | |
| vin (71.4998) | |
| ste (65.7112) | |
| bfe (56.0468) | |
| sto (48.7322) | |
| ldo (48.1133) | |
| lyg (44.7225) | |
| pan (43.8886) | |
| mgp (39.9077) | |
| ssp (37.1324) | |
| tra (35.9429) | |
| bla (30.092) | |
| gul (28.7693) | |
| ski (28.7601) | |
| mga (28.1961) | |
| sug (28.1314) | |
| sin (26.592) | |
| sag (26.1283) | |
| ova (25.6973) | |
| cki (24.1243) | |
| tbr (23.8976) | |
| fat (23.5884) | |
| cut (23.4494) | |
| csk (23.3638) | |
| mgm (22.9035) | |
| rec (20.7684) | |
| hea (20.6544) | |
| cst (20.3053) | |
| pro (18.9452) | |
| thg (18.1311) | |
| aor (13.8645) | |
| che (13.4951) | |
| lin (11.6482) | |
| cbe (11.4833) | |
| cte (11.1241) | |
| mas (10.5152) | |
| lun (10.0828) | |
| spc (9.97619) | |
| kid (9.85989) | |
| cje (9.58361) | |
| spl (8.16151) | |
| med (7.78889) | |
| nco (7.27802) | |
| liv (6.87537) | |
| eje (6.32536) | |
| ret (6.30793) | |
| amn (6.26566) | |
| nlu (5.75043) | |
| pgl (5.6872) | |
| fco (5.65949) | |
| nmm (5.17928) | |
| pty (5.13772) | |
| lnt (5.1231) | |
| nms (4.91873) | |
| nje (4.81168) | |
| eru (4.68187) | |
| ute (4.64746) | |
| fli (4.46338) | |
| elu (4.23892) | |
| jca (4.10256) | |
| col (4.09516) | |
| nep (4.04635) | |
| ill (4.03863) | |
| ton (4.0365) | |
| nca (3.96934) | |
| hlv (3.89918) | |
| csp (3.86847) | |
| jej (3.85795) | |
| cag (3.77986) | |
| fty (3.51679) | |
| eli (3.03628) | |
| cly (3.01605) | |
| eep (2.94154) | |
| ese (2.90955) | |
| mcp (2.73038) | |
| ecc (2.64581) | |
| eye (2.55754) | |
| cga (2.51186) | |
| ebs (2.48433) | |
| duo (2.41922) | |
| cli (2.29218) | |
| hyp (2.14255) | |
| cov (2.11444) | |
| tes (2.07814) | |
| cbl (1.95156) | |
| nbm (1.78784) | |
| fbs (1.40277) | |
| fcc (1.38449) | |
| fce (1.35796) | |
| fhi (1.01747) | |
| ece (0.45861) | |
| cbr (0.383926) | |
| ctl (0.306138) | |
| clu (0.239292) | |
| cty (0.20816) | |
| pla (0.133672) |
| Expressed library(ies): 98 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (90.0752) | |
| sme (80.0244) | |
| cmu (76.0485) | |
| vin (71.4998) | |
| ste (65.7112) | |
| bfe (56.0468) | |
| sto (48.7322) | |
| ldo (48.1133) | |
| lyg (44.7225) | |
| pan (43.8886) | |
| mgp (39.9077) | |
| ssp (37.1324) | |
| tra (35.9429) | |
| bla (30.092) | |
| gul (28.7693) | |
| ski (28.7601) | |
| mga (28.1961) | |
| sug (28.1314) | |
| sin (26.592) | |
| sag (26.1283) | |
| ova (25.6973) | |
| cki (24.1243) | |
| tbr (23.8976) | |
| fat (23.5884) | |
| cut (23.4494) | |
| csk (23.3638) | |
| mgm (22.9035) | |
| rec (20.7684) | |
| hea (20.6544) | |
| cst (20.3053) | |
| pro (18.9452) | |
| thg (18.1311) | |
| aor (13.8645) | |
| che (13.4951) | |
| lin (11.6482) | |
| cbe (11.4833) | |
| cte (11.1241) | |
| mas (10.5152) | |
| lun (10.0828) | |
| spc (9.97619) | |
| kid (9.85989) | |
| cje (9.58361) | |
| spl (8.16151) | |
| med (7.78889) | |
| nco (7.27802) | |
| liv (6.87537) | |
| eje (6.32536) | |
| ret (6.30793) | |
| amn (6.26566) | |
| nlu (5.75043) | |
| pgl (5.6872) | |
| fco (5.65949) | |
| nmm (5.17928) | |
| pty (5.13772) | |
| lnt (5.1231) | |
| nms (4.91873) | |
| nje (4.81168) | |
| eru (4.68187) | |
| ute (4.64746) | |
| fli (4.46338) | |
| elu (4.23892) | |
| jca (4.10256) | |
| col (4.09516) | |
| nep (4.04635) | |
| ill (4.03863) | |
| ton (4.0365) | |
| nca (3.96934) | |
| hlv (3.89918) | |
| csp (3.86847) | |
| jej (3.85795) | |
| cag (3.77986) | |
| fty (3.51679) | |
| eli (3.03628) | |
| cly (3.01605) | |
| eep (2.94154) | |
| ese (2.90955) | |
| mcp (2.73038) | |
| ecc (2.64581) | |
| eye (2.55754) | |
| cga (2.51186) | |
| ebs (2.48433) | |
| duo (2.41922) | |
| cli (2.29218) | |
| hyp (2.14255) | |
| cov (2.11444) | |
| tes (2.07814) | |
| cbl (1.95156) | |
| nbm (1.78784) | |
| fbs (1.40277) | |
| fcc (1.38449) | |
| fce (1.35796) | |
| fhi (1.01747) | |
| ece (0.45861) | |
| cbr (0.383926) | |
| ctl (0.306138) | |
| clu (0.239292) | |
| cty (0.20816) | |
| pla (0.133672) |