Non-Coding RNA Search

Ss1.1-LyN1-MLN01F050077.5.5

Sequence:


               
               CAGCACAGCAAGCAGCACGAGTAACCGATCCAGCACCCGGAGCCTCCTCAGCGTGAGCAG
CGGGATGGAGGGAGATAATGAGGATAATGAAGTGCCCGAGGTTACCAGAAGTCGGAGTCC
AGGCCCCCTGCAAGTGGACAGCATGCCCACCATGCCCCTTGAGAGGCCCCCCAGGGTGCC
TCCCCGAGCAGCCTCACAGAGGCCTCCAGTCAGGGAAACCTTCCATCCTCCTCCACCTGT
TCCACCCAGAGGTCGCTGATTCCACCTCTGAAAACCTGCTTACTTCAGGACTTGGAGACG
TGCGGTTTTTAGCCTGTTCATGATGTCTTGGTGTTGAGCGTTATGGCATGACTGCTGACC
TTAAGACCCACTCTGACTGCTGATGTTGTTGTGGCCCTGCTGGTTTGGGCTTTCCTTGAA
GAAGATATTATTAAGGCACAAAGAAGTGAAAACCTAGAGACTTCATTCACCGTCATCAAG
TAAACTGCCCTATTCTTGTTTGCCAAGAGGATGAAGACTTACTTGGAATACTTAACTCTA
ATTTGGCATGTCAGAAACCTGAAAAGATTGGTCAGAAATGTACTTTCCAAGTGATTTTAC
TGAAATGCACTTGTATTAGGCCATACTTATATGCTAGTCTAGAAGTGGTTGTGACTTAAG
ACTTAACAGTATTCAAGTAAGATATGTCCTAATTTTTAAATGATTCTTCAGCTTTTCTGT
AGATTCAGGAGGGTGTTTAAAAATGCCTGGGCTGGTCACATACAGCAAACTCAAAAAGAC
TTTAGAGAGGGACTAGTCCTAACTCCTCTTATATAGAAGGCAAATCCAAGGCTTCACAAG
TCTGGTACCGAGCACTCAGTTTGTTACAGGAAGAGGTGTGTCTAGAATTAGGACCTGTCA
AGTCACCACACTTTCTGTCTCCAAATAGCCAAGCTCTCTCCCTCAAGAAATGCCCAGATG
TAGAAGTTTGGTCAGTGACTGAGTCCTGGCCTTCCAAAAGTTTCCTTCTTCCATGGCTCC
CAGGTATGAGACTGTCAAGTATATGGGGCATGGATAATTCAGTGTGCCTTCAAAACAGTG
GTGCTGCCAAGGAACATCTGAAAAATGGTTGAGAACCAGAAGCTTGGGGTACCAAGGAGC
CCACTTACTGCTCTCCAGATGTTATAGATCTTCATTCTGGCCACAGGAGAGAGGAGAACC
CTTGGCTTTTCCTCTGCTGAATGGTCAGAAGAAGGAAGAACCTGAAATAGAAGTAGTTAT
CTATTGCCTTGTACACCTGATATTACTCCTGACTTGGGAAATCCGTGCAGAGAATGGGAA
GATTAAATATATCATTCATTTTGAGTCCCTAGCACATAAATCTACTTTCAAAGCACAGGT
CCTTAATTTGATGCTTAAACATACAATAAAATTAGTATCAGACCTATTTTTAAAAAATGA
TTAGAAATCTGGTGATTCTCCATGCAATTATTCTCCATCCCACACAAATATAGAAAAGCC
ATACTATCGAAGATCCATTTAAGTACAGTTTTATTAGGTCCTTTTCTAATGATTAATGGT
TCTTTTTCCACTTGCATCTCTCAGCCCAGCAAATAGGGACTTAGTGAAGTTAATAGCTTC
TGGGGTCTTGGGGGTTTGTTTTTCTGTGTTTTTGTTCGTTTGTTTGTTGTTGTTTGTTTG
ACATAAAATACACTATTGGCCATGGCCATTAAGAGAGTATTTATGCAAATTATGTGGCAC
ATCATAGCCATTTTGCTCTGGTTCCTTTACTCTTCCTGTCACCTATTTGGGAGAAATAGG
TTAATGTGAGAGAAAAGGAGAAATATGCGATTTGTATGATTATCTTTCCTGTTACTTATA
GACAGTCTCTATGTTAAGCACATGTGATTTTGATAAGAAGCTATACTTAAAAAATATTCA
ATACCTCTAAACCTCTTTTTGGATGCCAAATTTAGATCCTTTTTAAAACATTCTTTGATT
AACAAGCATTTATCAATAACATGACAAAATCTACTACTAGTCAATGGTGTTACCTCTTTG
TATACATGTCACCATTTGTGCAATATTGGAATATTTTATTGCATTTTTATTCTTATATGA
AAATAAGTGGAAAATATCAAATTGAAAGTACTCATGAGATACTTGGGTTTCATAAATGTG
ACACATTTGAGACACGGATGGAAATGATCAGGAGGGCCAAGTCAAAAATGGCAAGTCTTG
GAGTTCCTGCCATTGTGGCTCAGTGGAAATGAATCTGACTAGCATCCATGAGGACACAGG
TTCGATCCCTGGCCTTGCTCAGTGGGTTGTATCCAGTGTTGCCATGAGCTGTGGTGTAGG
TTGCAGACGCGGCTCAGATCTGGCATTGCTGTGGCTGTGGTGTAGGCTGGCGGCTACAGC
TCCAATTTGCCCCCGAGCCTGGGAACCTCCATATGCCGCAGGTGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACAGCAAGCAGCACGAGTAACCGATCCAGCACCCGGAGCCTCCTCAGCGTGAGCAG
CGGGATGGAGGGAGATAATGAGGATAATGAAGTGCCCGAGGTTACCAGAAGTCGGAGTCC
AGGCCCCCTGCAAGTGGACAGCATGCCCACCATGCCCCTTGAGAGGCCCCCCAGGGTGCC
TCCCCGAGCAGCCTCACAGAGGCCTCCAGTCAGGGAAACCTTCCATCCTCCTCCACCTGT
TCCACCCAGAGGTCGCTGATTCCACCTCTGAAAACCTGCTTACTTCAGGACTTGGAGACG
TGCGGTTTTTAGCCTGTTCATGATGTCTTGGTGTTGAGCGTTATGGCATGACTGCTGACC
TTAAGACCCACTCTGACTGCTGATGTTGTTGTGGCCCTGCTGGTTTGGGCTTTCCTTGAA
GAAGATATTATTAAGGCACAAAGAAGTGAAAACCTAGAGACTTCATTCACCGTCATCAAG
TAAACTGCCCTATTCTTGTTTGCCAAGAGGATGAAGACTTACTTGGAATACTTAACTCTA
ATTTGGCATGTCAGAAACCTGAAAAGATTGGTCAGAAATGTACTTTCCAAGTGATTTTAC
TGAAATGCACTTGTATTAGGCCATACTTATATGCTAGTCTAGAAGTGGTTGTGACTTAAG
ACTTAACAGTATTCAAGTAAGATATGTCCTAATTTTTAAATGATTCTTCAGCTTTTCTGT
AGATTCAGGAGGGTGTTTAAAAATGCCTGGGCTGGTCACATACAGCAAACTCAAAAAGAC
TTTAGAGAGGGACTAGTCCTAACTCCTCTTATATAGAAGGCAAATCCAAGGCTTCACAAG
TCTGGTACCGAGCACTCAGTTTGTTACAGGAAGAGGTGTGTCTAGAATTAGGACCTGTCA
AGTCACCACACTTTCTGTCTCCAAATAGCCAAGCTCTCTCCCTCAAGAAATGCCCAGATG
TAGAAGTTTGGTCAGTGACTGAGTCCTGGCCTTCCAAAAGTTTCCTTCTTCCATGGCTCC
CAGGTATGAGACTGTCAAGTATATGGGGCATGGATAATTCAGTGTGCCTTCAAAACAGTG
GTGCTGCCAAGGAACATCTGAAAAATGGTTGAGAACCAGAAGCTTGGGGTACCAAGGAGC
CCACTTACTGCTCTCCAGATGTTATAGATCTTCATTCTGGCCACAGGAGAGAGGAGAACC
CTTGGCTTTTCCTCTGCTGAATGGTCAGAAGAAGGAAGAACCTGAAATAGAAGTAGTTAT
CTATTGCCTTGTACACCTGATATTACTCCTGACTTGGGAAATCCGTGCAGAGAATGGGAA
GATTAAATATATCATTCATTTTGAGTCCCTAGCACATAAATCTACTTTCAAAGCACAGGT
CCTTAATTTGATGCTTAAACATACAATAAAATTAGTATCAGACCTATTTTTAAAAAATGA
TTAGAAATCTGGTGATTCTCCATGCAATTATTCTCCATCCCACACAAATATAGAAAAGCC
ATACTATCGAAGATCCATTTAAGTACAGTTTTATTAGGTCCTTTTCTAATGATTAATGGT
TCTTTTTCCACTTGCATCTCTCAGCCCAGCAAATAGGGACTTAGTGAAGTTAATAGCTTC
TGGGGTCTTGGGGGTTTGTTTTTCTGTGTTTTTGTTCGTTTGTTTGTTGTTGTTTGTTTG
ACATAAAATACACTATTGGCCATGGCCATTAAGAGAGTATTTATGCAAATTATGTGGCAC
ATCATAGCCATTTTGCTCTGGTTCCTTTACTCTTCCTGTCACCTATTTGGGAGAAATAGG
TTAATGTGAGAGAAAAGGAGAAATATGCGATTTGTATGATTATCTTTCCTGTTACTTATA
GACAGTCTCTATGTTAAGCACATGTGATTTTGATAAGAAGCTATACTTAAAAAATATTCA
ATACCTCTAAACCTCTTTTTGGATGCCAAATTTAGATCCTTTTTAAAACATTCTTTGATT
AACAAGCATTTATCAATAACATGACAAAATCTACTACTAGTCAATGGTGTTACCTCTTTG
TATACATGTCACCATTTGTGCAATATTGGAATATTTTATTGCATTTTTATTCTTATATGA
AAATAAGTGGAAAATATCAAATTGAAAGTACTCATGAGATACTTGGGTTTCATAAATGTG
ACACATTTGAGACACGGATGGAAATGATCAGGAGGGCCAAGTCAAAAATGGCAAGTCTTG
GAGTTCCTGCCATTGTGGCTCAGTGGAAATGAATCTGACTAGCATCCATGAGGACACAGG
TTCGATCCCTGGCCTTGCTCAGTGGGTTGTATCCAGTGTTGCCATGAGCTGTGGTGTAGG
TTGCAGACGCGGCTCAGATCTGGCATTGCTGTGGCTGTGGTGTAGGCTGGCGGCTACAGC
TCCAATTTGCCCCCGAGCCTGGGAACCTCCATATGCCGCAGGTGTGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               200-1653, gnl|bosTau2|chr26 (8056416-8054974)
               

               
               200-1653, gnl|Hg17|chr10 (98345383-98343548)
               

               
               200-1653, gnl|Mm7|chr19 (41168194-41166536)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-1653, gnl|bosTau2|chr26 (8056416-8054974)
               

               
               200-1653, gnl|Hg17|chr10 (98345383-98343548)
               

               
               200-1653, gnl|Mm7|chr19 (41168194-41166536)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	200-1653, gnl\|bosTau2\|chr26 (8056416-8054974)
	200-1653, gnl\|Hg17\|chr10 (98345383-98343548)
	200-1653, gnl\|Mm7\|chr19 (41168194-41166536)

	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	ova (0.129132)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)