Ss1.1-LyN1-MLN01F050096.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGGCGGGGCGGTTGGGAGACGAAGGGAGAGTCTTTTCAGCGCTGAGGACTGGCGCTGA GGAGGCGGCGGTGGCTCCCGGGGCGTTTGAGCGGGCTCACCCGAGCCCGCGGGCCAACGC GGATCCAGGCCCGACCGGCGGGACCGCCCCGGACTCCCCGCGGGCCTTCCTAGCCGCCAT GGAGGACGGTGTCTACGAGCCCCCGGACCTGACTCCCGAGGAGCGGATGGAGCTGGAGAA CATCCGGCGGCGGAAGCAGGAGCTGCTGGTGGAGATCCAGCGCCTGCGGGAGGAGCTCAG CGAAGCCATGAGCGAAGTCGAGGGGCTGGAGGCCAATGAGGGCAGCAAGACCTTGCAGCG GAACCGGAAGATGGCAATGGGCAGGAAGAAGTTCAACATGGACCCCAAAAAGGGGATCCA GTTCCTGGTGGAGAATGAACTTCTACAGAACACCCCCGAGGAGATCGCCCGCTTCCTGTA CAAGGGCGAAGGCCTGAACAAGACGGCCATCGGGGACTACCTGGGGGAGAGGGAAGAGTT GAACCTGGCAGTGCTCCATGCCTTTGTGGATCTGCACGAGTTCACCGACCTCAATCTGGT GCAGGCCCTCAGGCAATTTCTCTGGAGCTTCCGCCTCCCTGGAGAGGCCCAGAAGATCGA CCGCATGATGGAAGCCTTTGCCCAGCGCTACTGCCTGTGCAACCCCGGGGTTTTCCAGTC CACAGACACGTGCTACGTGCTGTCCTTCGCTGTGATCATGCTGAACACCAGCCTCCACAA CCCCAACGTCCGGGACAAGCCGGGCCTGGAGCGCTTCGTGGCCATGAACCGGGGCATCAA CGAGGGCGGGGACCTGCCCGAGGAGCTGCTCAGGAACCTCTACGACAGCATCCGAAATGA GCCGTTCAAGATTCCCGAGGACGACGGCAACGACCTGACTCACACCTTCTTCAACCCGGA CCGGGAGGGCTGGCTCCTCAAGCTGGGAGGGGGCCGGGTGAAGACGTGGAAGCGCCGCTG GTTTATCCTCACTGACAACTGCCTCTACTACTTTGAATACACTACGGACAAAGAGCCCCG AGGCATCATCCCGCTGGAGAATCTGAGCATCCGCGAAGTGGACGACCCCCGGAAACCAAA CTGCTTCGAGCTGTACATCCCCAACAACAAGGGGCAGCTAATCAAAGCCTGCAAGACGGA GGCAGATGGCCGGGTGGTCGAGGGCAACCACATGGTGTACCGGATCTCTGCCCCCACGCA GGAGGAGAAGGACGAGTGGATCAAGTCCATCCAGGCCGCCGTGAGCGTGGACCCCTTCTA TGAGATGTTGGCAGCAAGGAAGAAGCGGATTTCTGTCAAGAAGAAGCAGGAGCAGCCCTG ACCCCCTGCCCCCAACTCCATTATTTATTACGGAGCTGCCCCGCCCGGGTGGCCGGACCC CTGGGCCCCGGGGCTGCGGATCCTGGTTCCCCGTTTGGAAGATCCATCATCTCTAGCTCC TCTCTCGTTATTTGTAATTAACACGCCATTGGTAATATTAATTATTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGGCGGGGCGGTTGGGAGACGAAGGGAGAGTCTTTTCAGCGCTGAGGACTGGCGCTGA GGAGGCGGCGGTGGCTCCCGGGGCGTTTGAGCGGGCTCACCCGAGCCCGCGGGCCAACGC GGATCCAGGCCCGACCGGCGGGACCGCCCCGGACTCCCCGCGGGCCTTCCTAGCCGCCAT GGAGGACGGTGTCTACGAGCCCCCGGACCTGACTCCCGAGGAGCGGATGGAGCTGGAGAA CATCCGGCGGCGGAAGCAGGAGCTGCTGGTGGAGATCCAGCGCCTGCGGGAGGAGCTCAG CGAAGCCATGAGCGAAGTCGAGGGGCTGGAGGCCAATGAGGGCAGCAAGACCTTGCAGCG GAACCGGAAGATGGCAATGGGCAGGAAGAAGTTCAACATGGACCCCAAAAAGGGGATCCA GTTCCTGGTGGAGAATGAACTTCTACAGAACACCCCCGAGGAGATCGCCCGCTTCCTGTA CAAGGGCGAAGGCCTGAACAAGACGGCCATCGGGGACTACCTGGGGGAGAGGGAAGAGTT GAACCTGGCAGTGCTCCATGCCTTTGTGGATCTGCACGAGTTCACCGACCTCAATCTGGT GCAGGCCCTCAGGCAATTTCTCTGGAGCTTCCGCCTCCCTGGAGAGGCCCAGAAGATCGA CCGCATGATGGAAGCCTTTGCCCAGCGCTACTGCCTGTGCAACCCCGGGGTTTTCCAGTC CACAGACACGTGCTACGTGCTGTCCTTCGCTGTGATCATGCTGAACACCAGCCTCCACAA CCCCAACGTCCGGGACAAGCCGGGCCTGGAGCGCTTCGTGGCCATGAACCGGGGCATCAA CGAGGGCGGGGACCTGCCCGAGGAGCTGCTCAGGAACCTCTACGACAGCATCCGAAATGA GCCGTTCAAGATTCCCGAGGACGACGGCAACGACCTGACTCACACCTTCTTCAACCCGGA CCGGGAGGGCTGGCTCCTCAAGCTGGGAGGGGGCCGGGTGAAGACGTGGAAGCGCCGCTG GTTTATCCTCACTGACAACTGCCTCTACTACTTTGAATACACTACGGACAAAGAGCCCCG AGGCATCATCCCGCTGGAGAATCTGAGCATCCGCGAAGTGGACGACCCCCGGAAACCAAA CTGCTTCGAGCTGTACATCCCCAACAACAAGGGGCAGCTAATCAAAGCCTGCAAGACGGA GGCAGATGGCCGGGTGGTCGAGGGCAACCACATGGTGTACCGGATCTCTGCCCCCACGCA GGAGGAGAAGGACGAGTGGATCAAGTCCATCCAGGCCGCCGTGAGCGTGGACCCCTTCTA TGAGATGTTGGCAGCAAGGAAGAAGCGGATTTCTGTCAAGAAGAAGCAGGAGCAGCCCTG ACCCCCTGCCCCCAACTCCATTATTTATTACGGAGCTGCCCCGCCCGGGTGGCCGGACCC CTGGGCCCCGGGGCTGCGGATCCTGGTTCCCCGTTTGGAAGATCCATCATCTCTAGCTCC TCTCTCGTTATTTGTAATTAACACGCCATTGGTAATATTAATTATTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-118, + strand, RNAz p=0.846415 | |
| 5-123, - strand, RNAz p=0.961503 | |
| 228-1492, - strand, RNAz p=0.976836 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-118, + strand, RNAz p=0.846415 | |
| 5-123, - strand, RNAz p=0.961503 | |
| 228-1492, - strand, RNAz p=0.976836 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_017457, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-195, gnl|bosTau2|chr18 (50351348-50351154) | |
| 1-195, gnl|canFam2|chr1 (110688771-110688313) | |
| 1-195, gnl|dasNov1|scaffold_47321 (3112-3577) | |
| 1-195, gnl|echTel1|scaffold_299424 (46345-45885) | |
| 1-195, gnl|hg17|chr19 (53664285-53664753) | |
| 1-195, gnl|Hg17|chr19 (53664398-53664593) | |
| 1-195, gnl|loxAfr1|scaffold_39389 (9092-8633) | |
| 1-195, gnl|mm7|chr7 (41990643-41990231) | |
| 1-195, gnl|Mm7|chr7 (41990528-41990334) | |
| 1-195, gnl|oryCun1|scaffold_113729 (2779-2323) | |
| 1-195, gnl|panTro1|chr20 (51039553-51040020) | |
| 1-195, gnl|rheMac2|chr19 (54769813-54770280) | |
| 1-195, gnl|rn3|chr1 (96369671-96369176) | |
| 197-345, gnl|bosTau2|chr18 (50350491-50350343) | |
| 197-345, gnl|Hg17|chr19 (53665421-53665569) | |
| 197-345, gnl|Mm7|chr7 (41989391-41989243) | |
| 411-537, gnl|bosTau2|chr18 (50349153-50349027) | |
| 411-537, gnl|Hg17|chr19 (53667392-53667518) | |
| 411-537, gnl|Mm7|chr7 (41988534-41988409) | |
| 723-874, gnl|bosTau2|chr18 (50346986-50346835) | |
| 723-874, gnl|canFam2|chr1 (110684279-110684118) | |
| 723-874, gnl|danRer3|chr16 (126061-126219) | |
| 723-874, gnl|dasNov1|scaffold_47321 (7293-7453) | |
| 723-874, gnl|echTel1|scaffold_299424 (41793-41633) | |
| 723-874, gnl|fr1|chrUn (200889417-200889570) | |
| 723-874, gnl|galGal2|chr3_random (560518-560673) | |
| 723-874, gnl|hg17|chr19 (53669249-53669409) | |
| 723-874, gnl|Hg17|chr19 (53669248-53669399) | |
| 723-874, gnl|loxAfr1|scaffold_39389 (4411-4251) | |
| 723-874, gnl|mm7|chr7 (41986957-41986800) | |
| 723-874, gnl|Mm7|chr7 (41986956-41986805) | |
| 723-874, gnl|monDom2|scaffold_34 (897996-897840) | |
| 723-874, gnl|oryCun1|scaffold_41065 (215-69) | |
| 723-874, gnl|panTro1|chr20 (51044584-51044744) | |
| 723-874, gnl|rheMac2|chr19 (54775083-54775243) | |
| 723-874, gnl|rn3|chr1 (96366076-96365919) | |
| 723-874, gnl|tetNig1|chr8 (8556168-8556015) | |
| 723-874, gnl|xenTro1|scaffold_70 (455892-456048) | |
| 1294-1548, gnl|bosTau2|chr18 (50342743-50342486) | |
| 1294-1548, gnl|Hg17|chr19 (53674192-53674448) | |
| 1294-1548, gnl|Mm7|chr7 (41984082-41983830) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-195, gnl|bosTau2|chr18 (50351348-50351154) | |
| 1-195, gnl|canFam2|chr1 (110688771-110688313) | |
| 1-195, gnl|dasNov1|scaffold_47321 (3112-3577) | |
| 1-195, gnl|echTel1|scaffold_299424 (46345-45885) | |
| 1-195, gnl|hg17|chr19 (53664285-53664753) | |
| 1-195, gnl|Hg17|chr19 (53664398-53664593) | |
| 1-195, gnl|loxAfr1|scaffold_39389 (9092-8633) | |
| 1-195, gnl|mm7|chr7 (41990643-41990231) | |
| 1-195, gnl|Mm7|chr7 (41990528-41990334) | |
| 1-195, gnl|oryCun1|scaffold_113729 (2779-2323) | |
| 1-195, gnl|panTro1|chr20 (51039553-51040020) | |
| 1-195, gnl|rheMac2|chr19 (54769813-54770280) | |
| 1-195, gnl|rn3|chr1 (96369671-96369176) | |
| 197-345, gnl|bosTau2|chr18 (50350491-50350343) | |
| 197-345, gnl|Hg17|chr19 (53665421-53665569) | |
| 197-345, gnl|Mm7|chr7 (41989391-41989243) | |
| 411-537, gnl|bosTau2|chr18 (50349153-50349027) | |
| 411-537, gnl|Hg17|chr19 (53667392-53667518) | |
| 411-537, gnl|Mm7|chr7 (41988534-41988409) | |
| 723-874, gnl|bosTau2|chr18 (50346986-50346835) | |
| 723-874, gnl|canFam2|chr1 (110684279-110684118) | |
| 723-874, gnl|danRer3|chr16 (126061-126219) | |
| 723-874, gnl|dasNov1|scaffold_47321 (7293-7453) | |
| 723-874, gnl|echTel1|scaffold_299424 (41793-41633) | |
| 723-874, gnl|fr1|chrUn (200889417-200889570) | |
| 723-874, gnl|galGal2|chr3_random (560518-560673) | |
| 723-874, gnl|hg17|chr19 (53669249-53669409) | |
| 723-874, gnl|Hg17|chr19 (53669248-53669399) | |
| 723-874, gnl|loxAfr1|scaffold_39389 (4411-4251) | |
| 723-874, gnl|mm7|chr7 (41986957-41986800) | |
| 723-874, gnl|Mm7|chr7 (41986956-41986805) | |
| 723-874, gnl|monDom2|scaffold_34 (897996-897840) | |
| 723-874, gnl|oryCun1|scaffold_41065 (215-69) | |
| 723-874, gnl|panTro1|chr20 (51044584-51044744) | |
| 723-874, gnl|rheMac2|chr19 (54775083-54775243) | |
| 723-874, gnl|rn3|chr1 (96366076-96365919) | |
| 723-874, gnl|tetNig1|chr8 (8556168-8556015) | |
| 723-874, gnl|xenTro1|scaffold_70 (455892-456048) | |
| 1294-1548, gnl|bosTau2|chr18 (50342743-50342486) | |
| 1294-1548, gnl|Hg17|chr19 (53674192-53674448) | |
| 1294-1548, gnl|Mm7|chr7 (41984082-41983830) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| eep (0.367692) | |
| ebs (0.354904) | |
| fhi (0.339155) | |
| mas (0.210305) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| ebs (0.354904) | |
| fhi (0.339155) | |
| mas (0.210305) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cty (0.10408) |