Ss1.1-LyN1-MLN01F060027.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACCTGCTTTGGTTTGGAACCTCGGACCACCATTCGAGATCCGTGGCCTTCATTTCCTG GTGTGGGCGAAGCAGCCAGGGCTGGCGAGGCAGGGATGGAGCCGGAGTCCCTCTACAACC TGCTGCAGGCCCCGGGGAAGGTGGACCCACCGGCGGCAGAAACACTGGCACAAGGAGAGA AGAGGAAGTACCTGCCCCCCACCTCCCGGAAGGATCCCAGATTCGAAGAATTGCAAAAGG CACTGATGGAGTGGATCAACACCGAGCTCCTTCCTGAGCACATCGTGGTCCGTAGCCTGG AGGAAGACATGTTCGACGGGCTCATTCTGCACCACCTGTTCCAGAAGCTGGCGGGACTCA AGCTGAACGTGGAGGAGATTGCCTTGACCTCGGCCAGCCAGCGGCGCAAGCTCACGGTGG TGCTGGAGGCCGCCAACAAGAGCCTGCAGGTGGAGGAGTCGCAGGCCAAGTGGAGCGTGG AAAGCATCTTCAACAAGGACCTTCTGGCCACGCTGCATCTCCTCGTGGCCCTGGCCAAGC GCTTCCAGCCCAGCCTGCCCCTGCCAGCCAACGTCCAGGTGGAAGTGATCACCATGGAGA GCACCAAGAGTGGCCTGAAGTCGGAGAAGTCAGTGGAACAGCTCACTGAGTGCAGCACAG ACACGGACCAAGCTTCGAAGGATGTCTTTGATGAATTATTTAAGCTGGCTCCGGAGAAAG TGAATGCTGTGAAAGAGGCCATCGTGAACTTCGTCAACCAGAACCTGGACCGCCTGGGCC TGTCTGTGCAGAATCTGGACACCCAGTTCGCAGATGGAGTCATCCTGCTGCTGCTGATTG GACAGCTGGAGGGCTTCTTCCTGCACCTGAAGGAATTCTACCTCACTCCCAACTCTCCTG CGGAAATGCTGCACAATGTCACCCTGGCCCTGGAGCTGCTGAAGGACGAAGGCCTCCTCA AATACCCTGTCAGCCCCGAAGACATTGTGAACAAGGACGCCAAGAGCACGCTGCGGGTCC TCTACAGCCTGTTTTGCAAGCACAAGCTGAAAGAAAGCGCGGACGGAGTGCCCAGGGGAT CCCCAAATTAACCCTCAGTGTCCCCCAAAGCTGCCTCTCAGAGACCCAGCTGGAGGGCCC AGGGCTGCAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACCTGCTTTGGTTTGGAACCTCGGACCACCATTCGAGATCCGTGGCCTTCATTTCCTG GTGTGGGCGAAGCAGCCAGGGCTGGCGAGGCAGGGATGGAGCCGGAGTCCCTCTACAACC TGCTGCAGGCCCCGGGGAAGGTGGACCCACCGGCGGCAGAAACACTGGCACAAGGAGAGA AGAGGAAGTACCTGCCCCCCACCTCCCGGAAGGATCCCAGATTCGAAGAATTGCAAAAGG CACTGATGGAGTGGATCAACACCGAGCTCCTTCCTGAGCACATCGTGGTCCGTAGCCTGG AGGAAGACATGTTCGACGGGCTCATTCTGCACCACCTGTTCCAGAAGCTGGCGGGACTCA AGCTGAACGTGGAGGAGATTGCCTTGACCTCGGCCAGCCAGCGGCGCAAGCTCACGGTGG TGCTGGAGGCCGCCAACAAGAGCCTGCAGGTGGAGGAGTCGCAGGCCAAGTGGAGCGTGG AAAGCATCTTCAACAAGGACCTTCTGGCCACGCTGCATCTCCTCGTGGCCCTGGCCAAGC GCTTCCAGCCCAGCCTGCCCCTGCCAGCCAACGTCCAGGTGGAAGTGATCACCATGGAGA GCACCAAGAGTGGCCTGAAGTCGGAGAAGTCAGTGGAACAGCTCACTGAGTGCAGCACAG ACACGGACCAAGCTTCGAAGGATGTCTTTGATGAATTATTTAAGCTGGCTCCGGAGAAAG TGAATGCTGTGAAAGAGGCCATCGTGAACTTCGTCAACCAGAACCTGGACCGCCTGGGCC TGTCTGTGCAGAATCTGGACACCCAGTTCGCAGATGGAGTCATCCTGCTGCTGCTGATTG GACAGCTGGAGGGCTTCTTCCTGCACCTGAAGGAATTCTACCTCACTCCCAACTCTCCTG CGGAAATGCTGCACAATGTCACCCTGGCCCTGGAGCTGCTGAAGGACGAAGGCCTCCTCA AATACCCTGTCAGCCCCGAAGACATTGTGAACAAGGACGCCAAGAGCACGCTGCGGGTCC TCTACAGCCTGTTTTGCAAGCACAAGCTGAAAGAAAGCGCGGACGGAGTGCCCAGGGGAT CCCCAAATTAACCCTCAGTGTCCCCCAAAGCTGCCTCTCAGAGACCCAGCTGGAGGGCCC AGGGCTGCAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 805-908, - strand, RNAz p=0.638252 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 805-908, - strand, RNAz p=0.638252 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 343-484, gnl|bosTau2|chr4 (37383460-37383319) | |
| 343-484, gnl|canFam2|chr10 (24603113-24602940) | |
| 343-484, gnl|echTel1|scaffold_171438 (7688-7496) | |
| 343-484, gnl|fr1|chrUn (66771801-66771985) | |
| 343-484, gnl|hg17|chr22 (42909871-42910057) | |
| 343-484, gnl|Hg17|chr22 (42909895-42910036) | |
| 343-484, gnl|mm7|chr15 (84412322-84412506) | |
| 343-484, gnl|Mm7|chr15 (84412344-84412485) | |
| 343-484, gnl|monDom2|scaffold_119 (1837026-1836841) | |
| 343-484, gnl|oryCun1|scaffold_191387 (579-387) | |
| 343-484, gnl|panTro1|chr23 (43209539-43209725) | |
| 343-484, gnl|rheMac2|chr10 (88184198-88184384) | |
| 343-484, gnl|rn3|chr7 (122362088-122362272) | |
| 343-484, gnl|tetNig1|chr13 (9042663-9042815) | |
| 486-599, gnl|bosTau2|chr4 (37381037-37380924) | |
| 486-599, gnl|canFam2|chr10 (24601992-24601839) | |
| 486-599, gnl|dasNov1|scaffold_22743 (542-394) | |
| 486-599, gnl|echTel1|scaffold_171438 (3651-3512) | |
| 486-599, gnl|hg17|chr22 (42911313-42911466) | |
| 486-599, gnl|Hg17|chr22 (42911334-42911447) | |
| 486-599, gnl|loxAfr1|scaffold_142131 (825-672) | |
| 486-599, gnl|mm7|chr15 (84413281-84413433) | |
| 486-599, gnl|Mm7|chr15 (84413302-84413415) | |
| 486-599, gnl|monDom2|scaffold_119 (1835896-1835775) | |
| 486-599, gnl|oryCun1|scaffold_77203 (429-592) | |
| 486-599, gnl|panTro1|chr23 (43210993-43211146) | |
| 486-599, gnl|rheMac2|chr10 (88185633-88185786) | |
| 486-599, gnl|rn3|chr7 (122362846-122362984) | |
| 486-599, gnl|tetNig1|chr13 (9043160-9043298) | |
| 805-908, gnl|bosTau2|chr4 (37371270-37371167) | |
| 805-908, gnl|canFam2|chr10 (24594272-24594199) | |
| 805-908, gnl|echTel1|scaffold_202021 (4715-4788) | |
| 805-908, gnl|fr1|chrUn (66773193-66773270) | |
| 805-908, gnl|hg17|chr22 (42919394-42919467) | |
| 805-908, gnl|Hg17|chr22 (42919400-42919503) | |
| 805-908, gnl|loxAfr1|scaffold_25434 (5361-5434) | |
| 805-908, gnl|mm7|chr15 (84420098-84420171) | |
| 805-908, gnl|Mm7|chr15 (84420104-84420207) | |
| 805-908, gnl|monDom2|scaffold_119 (1827812-1827739) | |
| 805-908, gnl|oryCun1|scaffold_211736 (88284-88211) | |
| 805-908, gnl|panTro1|chr23 (43219092-43219165) | |
| 805-908, gnl|rheMac2|chr10 (88193993-88194066) | |
| 805-908, gnl|rn3|chr7 (122368815-122368888) | |
| 805-908, gnl|tetNig1|chr13 (9043999-9044075) | |
| 975-1120, gnl|bosTau2|chr4 (37364074-37363929) | |
| 975-1120, gnl|canFam2|chr10 (24589718-24589319) | |
| 975-1120, gnl|hg17|chr22 (42926993-42927375) | |
| 975-1120, gnl|Hg17|chr22 (42927091-42927229) | |
| 975-1120, gnl|loxAfr1|scaffold_25434 (11559-11926) | |
| 975-1120, gnl|mm7|chr15 (84423566-84423925) | |
| 975-1120, gnl|Mm7|chr15 (84423653-84423798) | |
| 975-1120, gnl|panTro1|chr23 (43226794-43227176) | |
| 975-1120, gnl|rheMac2|chr10 (88202280-88202670) | |
| 975-1120, gnl|rn3|chr7 (122374032-122374377) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 343-484, gnl|bosTau2|chr4 (37383460-37383319) | |
| 343-484, gnl|canFam2|chr10 (24603113-24602940) | |
| 343-484, gnl|echTel1|scaffold_171438 (7688-7496) | |
| 343-484, gnl|fr1|chrUn (66771801-66771985) | |
| 343-484, gnl|hg17|chr22 (42909871-42910057) | |
| 343-484, gnl|Hg17|chr22 (42909895-42910036) | |
| 343-484, gnl|mm7|chr15 (84412322-84412506) | |
| 343-484, gnl|Mm7|chr15 (84412344-84412485) | |
| 343-484, gnl|monDom2|scaffold_119 (1837026-1836841) | |
| 343-484, gnl|oryCun1|scaffold_191387 (579-387) | |
| 343-484, gnl|panTro1|chr23 (43209539-43209725) | |
| 343-484, gnl|rheMac2|chr10 (88184198-88184384) | |
| 343-484, gnl|rn3|chr7 (122362088-122362272) | |
| 343-484, gnl|tetNig1|chr13 (9042663-9042815) | |
| 486-599, gnl|bosTau2|chr4 (37381037-37380924) | |
| 486-599, gnl|canFam2|chr10 (24601992-24601839) | |
| 486-599, gnl|dasNov1|scaffold_22743 (542-394) | |
| 486-599, gnl|echTel1|scaffold_171438 (3651-3512) | |
| 486-599, gnl|hg17|chr22 (42911313-42911466) | |
| 486-599, gnl|Hg17|chr22 (42911334-42911447) | |
| 486-599, gnl|loxAfr1|scaffold_142131 (825-672) | |
| 486-599, gnl|mm7|chr15 (84413281-84413433) | |
| 486-599, gnl|Mm7|chr15 (84413302-84413415) | |
| 486-599, gnl|monDom2|scaffold_119 (1835896-1835775) | |
| 486-599, gnl|oryCun1|scaffold_77203 (429-592) | |
| 486-599, gnl|panTro1|chr23 (43210993-43211146) | |
| 486-599, gnl|rheMac2|chr10 (88185633-88185786) | |
| 486-599, gnl|rn3|chr7 (122362846-122362984) | |
| 486-599, gnl|tetNig1|chr13 (9043160-9043298) | |
| 805-908, gnl|bosTau2|chr4 (37371270-37371167) | |
| 805-908, gnl|canFam2|chr10 (24594272-24594199) | |
| 805-908, gnl|echTel1|scaffold_202021 (4715-4788) | |
| 805-908, gnl|fr1|chrUn (66773193-66773270) | |
| 805-908, gnl|hg17|chr22 (42919394-42919467) | |
| 805-908, gnl|Hg17|chr22 (42919400-42919503) | |
| 805-908, gnl|loxAfr1|scaffold_25434 (5361-5434) | |
| 805-908, gnl|mm7|chr15 (84420098-84420171) | |
| 805-908, gnl|Mm7|chr15 (84420104-84420207) | |
| 805-908, gnl|monDom2|scaffold_119 (1827812-1827739) | |
| 805-908, gnl|oryCun1|scaffold_211736 (88284-88211) | |
| 805-908, gnl|panTro1|chr23 (43219092-43219165) | |
| 805-908, gnl|rheMac2|chr10 (88193993-88194066) | |
| 805-908, gnl|rn3|chr7 (122368815-122368888) | |
| 805-908, gnl|tetNig1|chr13 (9043999-9044075) | |
| 975-1120, gnl|bosTau2|chr4 (37364074-37363929) | |
| 975-1120, gnl|canFam2|chr10 (24589718-24589319) | |
| 975-1120, gnl|hg17|chr22 (42926993-42927375) | |
| 975-1120, gnl|Hg17|chr22 (42927091-42927229) | |
| 975-1120, gnl|loxAfr1|scaffold_25434 (11559-11926) | |
| 975-1120, gnl|mm7|chr15 (84423566-84423925) | |
| 975-1120, gnl|Mm7|chr15 (84423653-84423798) | |
| 975-1120, gnl|panTro1|chr23 (43226794-43227176) | |
| 975-1120, gnl|rheMac2|chr10 (88202280-88202670) | |
| 975-1120, gnl|rn3|chr7 (122374032-122374377) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| clu (0.478583) | |
| cty (0.41632) | |
| csp (0.322373) | |
| cly (0.241284) | |
| cag (0.151194) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| cty (0.41632) | |
| csp (0.322373) | |
| cly (0.241284) | |
| cag (0.151194) |