Non-Coding RNA Search

Ss1.1-LyN1-MLN01F060066.5

Sequence:


               
               CATATTTTCTTTCCTGCCTTGTTTTAGTCAAGTAGTGGTTTTTGAAAAAGGAAAATTCAA
GTAATAACTAAGGCTGCGACTTTTTAGTATAAAAAGCACAGCCATTGGCCAAAGTGATGA
AGGAATCTTTTTTCAGTTTTTATGGAAAAACTGAAGGAGTAACATTCTGACAAGTAAGCT
GTATTAAGAGCTCTACACAGAGAAGAGGCCTCTTTATCACAGACACCACACTTACAAACT
GGGAACAGCTGGAATGCTATTGATGTTATTTTTCAGAGAGTTATTACTTCTCTGTATTTC
TGGTAAGGGTTTTAGCCATAACTGTGCATAGAAAAATAATTATCTTGCTCTATAAAAATG
AAGGGGGTAATGTATGGTAAATTATGTTCTGATATCCTCCTACAGTCATTAAAACTGACA
GAGTAATTTGCTTTGTTATCCCAGTCTTGGACTGGTATTCCCTTTTTATAGTCATCTGTT
ATTCTCTCCCTCTTCTTCTTTACTTTAAACAATTAATATATTAATAGCTTTGTGACCCTA
TAGTAACTAATTGAAAAGGCCACTTTGATCTGGGGTAACCCAGCAACTCCTGCAGCACAA
GCGGGCGGGGGAGGAGGAGGTACCCTTTCAGGAATGAGGAGAGCTGACTGCTGAGAAACA
AGAAACAATGCATTTTTTTTCCCATGAACGGTGCTGTTCTGAAGTCTTCAAATTTTTCCC
TCTGTTAGGAAGCAGTGTAAATTTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA
AAACTAGCCCACTGGATCCTTGGGGCAGAGTCTCCTTGCCTGCCCGCTTGCATCTCTCAC
AAGCATCCTATCCTAATAAATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATTTTCTTTCCTGCCTTGTTTTAGTCAAGTAGTGGTTTTTGAAAAAGGAAAATTCAA
GTAATAACTAAGGCTGCGACTTTTTAGTATAAAAAGCACAGCCATTGGCCAAAGTGATGA
AGGAATCTTTTTTCAGTTTTTATGGAAAAACTGAAGGAGTAACATTCTGACAAGTAAGCT
GTATTAAGAGCTCTACACAGAGAAGAGGCCTCTTTATCACAGACACCACACTTACAAACT
GGGAACAGCTGGAATGCTATTGATGTTATTTTTCAGAGAGTTATTACTTCTCTGTATTTC
TGGTAAGGGTTTTAGCCATAACTGTGCATAGAAAAATAATTATCTTGCTCTATAAAAATG
AAGGGGGTAATGTATGGTAAATTATGTTCTGATATCCTCCTACAGTCATTAAAACTGACA
GAGTAATTTGCTTTGTTATCCCAGTCTTGGACTGGTATTCCCTTTTTATAGTCATCTGTT
ATTCTCTCCCTCTTCTTCTTTACTTTAAACAATTAATATATTAATAGCTTTGTGACCCTA
TAGTAACTAATTGAAAAGGCCACTTTGATCTGGGGTAACCCAGCAACTCCTGCAGCACAA
GCGGGCGGGGGAGGAGGAGGTACCCTTTCAGGAATGAGGAGAGCTGACTGCTGAGAAACA
AGAAACAATGCATTTTTTTTCCCATGAACGGTGCTGTTCTGAAGTCTTCAAATTTTTCCC
TCTGTTAGGAAGCAGTGTAAATTTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA
AAACTAGCCCACTGGATCCTTGGGGCAGAGTCTCCTTGCCTGCCCGCTTGCATCTCTCAC
AAGCATCCTATCCTAATAAATCTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               42-159, + strand, RNAz p=0.997287
               

               
               86-185, - strand, RNAz p=0.528951
               

               
               513-614, - strand, RNAz p=0.854115

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-159, + strand, RNAz p=0.997287
               

               
               86-185, - strand, RNAz p=0.528951
               

               
               513-614, - strand, RNAz p=0.854115

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               42-159, CJ012875 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ012875.1|), blast E-value=0, identity=99.15% 
               

               
               42-157, K-EST0214552 L17N670205n1 Homo sapiens cDNA clone (gb|CB155950.1|), 
blast E-value=0.0000000000005, identity=85.59%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               42-159, CJ012875 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ012875.1|), blast E-value=0, identity=99.15% 
               

               
               42-157, K-EST0214552 L17N670205n1 Homo sapiens cDNA clone (gb|CB155950.1|), 
blast E-value=0.0000000000005, identity=85.59%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AJ243299, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AJ243299, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-771, gnl|bosTau2|chr18 (30313049-30313815)
               

               
               3-771, gnl|canFam2|chr5 (83008915-83008248)
               

               
               3-771, gnl|dasNov1|scaffold_71764 (4020-3356)
               

               
               3-771, gnl|echTel1|scaffold_284677 (10617-9963)
               

               
               3-771, gnl|galGal2|chr11_random (217438-218158)
               

               
               3-771, gnl|hg17|chr16 (68288062-68288703)
               

               
               3-771, gnl|Hg17|chr16 (68288136-68288886)
               

               
               3-771, gnl|loxAfr1|scaffold_7960 (37414-38084)
               

               
               3-771, gnl|mm7|chr8 (105971550-105972183)
               

               
               3-771, gnl|Mm7|chr8 (105971622-105972372)
               

               
               3-771, gnl|monDom2|scaffold_23 (4489025-4488319)
               

               
               3-771, gnl|oryCun1|scaffold_202257 (88066-87428)
               

               
               3-771, gnl|panTro1|chr18 (62637669-62638309)
               

               
               3-771, gnl|rheMac2|chr20 (68080429-68081076)
               

               
               3-771, gnl|rn3|chr19 (37239214-37239852)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-771, gnl|bosTau2|chr18 (30313049-30313815)
               

               
               3-771, gnl|canFam2|chr5 (83008915-83008248)
               

               
               3-771, gnl|dasNov1|scaffold_71764 (4020-3356)
               

               
               3-771, gnl|echTel1|scaffold_284677 (10617-9963)
               

               
               3-771, gnl|galGal2|chr11_random (217438-218158)
               

               
               3-771, gnl|hg17|chr16 (68288062-68288703)
               

               
               3-771, gnl|Hg17|chr16 (68288136-68288886)
               

               
               3-771, gnl|loxAfr1|scaffold_7960 (37414-38084)
               

               
               3-771, gnl|mm7|chr8 (105971550-105972183)
               

               
               3-771, gnl|Mm7|chr8 (105971622-105972372)
               

               
               3-771, gnl|monDom2|scaffold_23 (4489025-4488319)
               

               
               3-771, gnl|oryCun1|scaffold_202257 (88066-87428)
               

               
               3-771, gnl|panTro1|chr18 (62637669-62638309)
               

               
               3-771, gnl|rheMac2|chr20 (68080429-68081076)
               

               
               3-771, gnl|rn3|chr19 (37239214-37239852)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ski (0.29347)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	42-159, + strand, RNAz p=0.997287
	86-185, - strand, RNAz p=0.528951
	513-614, - strand, RNAz p=0.854115

	42-159, CJ012875 full-length enriched swine cDNA library, adult mesenteric (dbj\|CJ012875.1\|), blast E-value=0, identity=99.15%
	42-157, K-EST0214552 L17N670205n1 Homo sapiens cDNA clone (gb\|CB155950.1\|), blast E-value=0.0000000000005, identity=85.59%

	3-771, gnl\|bosTau2\|chr18 (30313049-30313815)
	3-771, gnl\|canFam2\|chr5 (83008915-83008248)
	3-771, gnl\|dasNov1\|scaffold_71764 (4020-3356)
	3-771, gnl\|echTel1\|scaffold_284677 (10617-9963)
	3-771, gnl\|galGal2\|chr11_random (217438-218158)
	3-771, gnl\|hg17\|chr16 (68288062-68288703)
	3-771, gnl\|Hg17\|chr16 (68288136-68288886)
	3-771, gnl\|loxAfr1\|scaffold_7960 (37414-38084)
	3-771, gnl\|mm7\|chr8 (105971550-105972183)
	3-771, gnl\|Mm7\|chr8 (105971622-105972372)
	3-771, gnl\|monDom2\|scaffold_23 (4489025-4488319)
	3-771, gnl\|oryCun1\|scaffold_202257 (88066-87428)
	3-771, gnl\|panTro1\|chr18 (62637669-62638309)
	3-771, gnl\|rheMac2\|chr20 (68080429-68081076)
	3-771, gnl\|rn3\|chr19 (37239214-37239852)

	ski (0.29347)
	sin (0.174948)
	tbr (0.154178)
	kid (0.129735)
	tra (0.123092)