Non-Coding RNA Search

Ss1.1-LyN1-MLN01F060083.5

Sequence:


               
               GATTGGGCCTAAAGGGAGCGGGCCTGCTAGTCCGCTCTGCAACCGGAAAAAATCGAAATA
AGGAGGGCTTAGCTGGGCGCCGCCATGACAACCTGATACCGGAAAAGGCGGAGCGCTCCT
TCCCCATTGATCCTCCTTCGGCCTCGGCCTCAAGATGCAAGCGGCCCTGGAGGTCACTGC
CCGCTACTGCAGCCGAGAGCTGGAGCAGTATGGCCAGTGTGTGGCAGCCAAGCCTGAGTC
ATGGCAACGGGACTGTCATCACCTTAAGATGAGCATCTCTCAGTGCACGTCCTCCCACCC
AATCATCCGTCAGATCCGCCAGGCCTGTGCAGAGCCTTTTGAGGCCTTTGAGGAGTGTCT
CCGGCAGAATGAGGCAGCCGTGAGCAACTGCGCAGAGCATGTACGCCGCTTCTTGCAGTG
TGCTGAACAGGTGCAGCCGACACACTCGCCCTCAACCACGCAGGCACAGCCGTTTCCTGC
CTCCTAAGGACCATCGGGACCATGGGTAAACTGGACGTGAGGGACTGGCCACTTGATACC
CCCTCCTCTGAAGACTTGTCAGTTGGAGTCCTGAGGGCCCTGCGCGTGGACATGGCTTCC
CTGGACATTAAGACTCAATAAATAAAGACTGCATACCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGGGCCTAAAGGGAGCGGGCCTGCTAGTCCGCTCTGCAACCGGAAAAAATCGAAATA
AGGAGGGCTTAGCTGGGCGCCGCCATGACAACCTGATACCGGAAAAGGCGGAGCGCTCCT
TCCCCATTGATCCTCCTTCGGCCTCGGCCTCAAGATGCAAGCGGCCCTGGAGGTCACTGC
CCGCTACTGCAGCCGAGAGCTGGAGCAGTATGGCCAGTGTGTGGCAGCCAAGCCTGAGTC
ATGGCAACGGGACTGTCATCACCTTAAGATGAGCATCTCTCAGTGCACGTCCTCCCACCC
AATCATCCGTCAGATCCGCCAGGCCTGTGCAGAGCCTTTTGAGGCCTTTGAGGAGTGTCT
CCGGCAGAATGAGGCAGCCGTGAGCAACTGCGCAGAGCATGTACGCCGCTTCTTGCAGTG
TGCTGAACAGGTGCAGCCGACACACTCGCCCTCAACCACGCAGGCACAGCCGTTTCCTGC
CTCCTAAGGACCATCGGGACCATGGGTAAACTGGACGTGAGGGACTGGCCACTTGATACC
CCCTCCTCTGAAGACTTGTCAGTTGGAGTCCTGAGGGCCCTGCGCGTGGACATGGCTTCC
CTGGACATTAAGACTCAATAAATAAAGACTGCATACCAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q29168_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q29168_PIG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               288-464, gnl|bosTau2|chr11 (36358972-36359148)
               

               
               288-464, gnl|Hg17|chr2 (113059999-113060174)
               

               
               288-464, gnl|Mm7|chr2 (128871244-128871420)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               288-464, gnl|bosTau2|chr11 (36358972-36359148)
               

               
               288-464, gnl|Hg17|chr2 (113059999-113060174)
               

               
               288-464, gnl|Mm7|chr2 (128871244-128871420)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               pty (0.285429)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               pty (0.285429)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	288-464, gnl\|bosTau2\|chr11 (36358972-36359148)
	288-464, gnl\|Hg17\|chr2 (113059999-113060174)
	288-464, gnl\|Mm7\|chr2 (128871244-128871420)

	amn (0.417711)
	nlu (0.383362)
	nco (0.323468)
	csp (0.322373)
	pty (0.285429)
	eye (0.170503)
	cli (0.152812)
	hyp (0.142837)
	hlv (0.139256)
	eru (0.120048)
	ebs (0.118301)
	eje (0.0988338)