Ss1.1-LyN1-MLN01F060088.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTGCTGAGGAGAGACGGGGAGGAGGAGCCGCCGAGGAGACCCGAGCCGAGGAGCGG CGAGCCGGAGGAGGCGGCGGCGGCGCGGGCACGGGCTTTCCTCGATCGCGGGGATCTCCA GGGGCGAAGGGATCGCCGGGGAGCGGGACCGGAGAGCCGCGCCTGCCGCGCGGCGCGCCC CTTCCCGCCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGGGATCAATTTGACAACTTA GAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATACATCAAATTCGTAAAGGAA AGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAGGTAAGTTGATACTGAGAAAGGC TGGCTGTTAACTGCAGAATGGATGTAAGGATAATTCTACACGGCGTGTTTGTAGTATAAA TGCATAATCCTTGAACGATTTCTTCTTTCACGTCAGCTTATTCTTCAATAAAAACAATTG TTTTTAAATATAACGGTGGAGTTAGCACGCTATGTCCAGGAACTGAAGCAGGAGAGGAAA TCGCACTTTCATGAAGGACGGAAGGCACAGCAGCATATAGAGACTTGCTGGAAGCAACTA GAATCAAGCAAAAGGCGATTTGAGCGGGACTGCAAAGAGGCCGACCGAGCCCAGCAGTAC TTTGAGAAAATGGATGCTGACATAAACGTTACAAAAGCAGATGTCGAAAAGGCACGACAA CAAGCTCAACTCCGTCACCAGATGGCAGAGGACAGCAAAGCAGATTACTCATCAATTCTT CAGAAATTCAACCATGAGCAGCATGAATATTACCACACTCACATTCCCAACATCTTTCAG AAAATACAAGAGATGGAGGAGAGGAGGATAGGGAGAATTGGAGAATCAGTCAAGACGTAT GCTGAACTGGACCGGCAGGTGATTCCAATCATTGGGAAATGCTTGGATGGAATAGTAAAG GCAGCCGAGTCAATTGACCCGAAAAATGATTCACAGCTGGTAATAGAAGCTTATAAGTCT GGGTTCGAGCCTCCCGGAGACATTGAATTTGAGGATTTCACTCAGCCGATGAAGCGTACC GTGTCCGACAACAGCCTTTCGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTGCTGAGGAGAGACGGGGAGGAGGAGCCGCCGAGGAGACCCGAGCCGAGGAGCGG CGAGCCGGAGGAGGCGGCGGCGGCGCGGGCACGGGCTTTCCTCGATCGCGGGGATCTCCA GGGGCGAAGGGATCGCCGGGGAGCGGGACCGGAGAGCCGCGCCTGCCGCGCGGCGCGCCC CTTCCCGCCCCCTGCACCATGAGCTGGGGCACCGAGCTCTGGGATCAATTTGACAACTTA GAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATACATCAAATTCGTAAAGGAA AGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAGGTAAGTTGATACTGAGAAAGGC TGGCTGTTAACTGCAGAATGGATGTAAGGATAATTCTACACGGCGTGTTTGTAGTATAAA TGCATAATCCTTGAACGATTTCTTCTTTCACGTCAGCTTATTCTTCAATAAAAACAATTG TTTTTAAATATAACGGTGGAGTTAGCACGCTATGTCCAGGAACTGAAGCAGGAGAGGAAA TCGCACTTTCATGAAGGACGGAAGGCACAGCAGCATATAGAGACTTGCTGGAAGCAACTA GAATCAAGCAAAAGGCGATTTGAGCGGGACTGCAAAGAGGCCGACCGAGCCCAGCAGTAC TTTGAGAAAATGGATGCTGACATAAACGTTACAAAAGCAGATGTCGAAAAGGCACGACAA CAAGCTCAACTCCGTCACCAGATGGCAGAGGACAGCAAAGCAGATTACTCATCAATTCTT CAGAAATTCAACCATGAGCAGCATGAATATTACCACACTCACATTCCCAACATCTTTCAG AAAATACAAGAGATGGAGGAGAGGAGGATAGGGAGAATTGGAGAATCAGTCAAGACGTAT GCTGAACTGGACCGGCAGGTGATTCCAATCATTGGGAAATGCTTGGATGGAATAGTAAAG GCAGCCGAGTCAATTGACCCGAAAAATGATTCACAGCTGGTAATAGAAGCTTATAAGTCT GGGTTCGAGCCTCCCGGAGACATTGAATTTGAGGATTTCACTCAGCCGATGAAGCGTACC GTGTCCGACAACAGCCTTTCGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 871-988, + strand, RNAz p=0.541087 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 871-988, + strand, RNAz p=0.541087 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 222-493, gnl|bosTau2|chr11 (80575266-80574991) | |
| 222-493, gnl|Hg17|chr9 (129836792-129836525) | |
| 607-712, gnl|bosTau2|chr11 (80545901-80545796) | |
| 607-712, gnl|canFam2|chr9 (57249099-57248977) | |
| 607-712, gnl|danRer3|chr21 (1880011-1880124) | |
| 607-712, gnl|dasNov1|scaffold_194128 (575-452) | |
| 607-712, gnl|echTel1|scaffold_286927 (39248-39121) | |
| 607-712, gnl|fr1|chrUn (31031652-31031765) | |
| 607-712, gnl|galGal2|chr17 (5099515-5099391) | |
| 607-712, gnl|hg17|chr9 (129799172-129799300) | |
| 607-712, gnl|Hg17|chr9 (129799297-129799192) | |
| 607-712, gnl|loxAfr1|scaffold_4561 (53385-53504) | |
| 607-712, gnl|mm7|chr2 (31090280-31090392) | |
| 607-712, gnl|Mm7|chr2 (31090389-31090284) | |
| 607-712, gnl|monDom2|scaffold_51 (4998102-4998210) | |
| 607-712, gnl|oryCun1|scaffold_167488 (3891-4002) | |
| 607-712, gnl|panTro1|chr11 (114666176-114666305) | |
| 607-712, gnl|rheMac2|chr15 (8883787-8883659) | |
| 607-712, gnl|rn3|chr3 (10034930-10035050) | |
| 607-712, gnl|tetNig1|chrUn_random (2669853-2669964) | |
| 607-712, gnl|xenTro1|scaffold_82 (113936-114061) | |
| 832-988, gnl|bosTau2|chr11 (80518083-80517927) | |
| 832-988, gnl|Hg17|chr9 (129769183-129769027) | |
| 832-988, gnl|Mm7|chr2 (31062895-31062738) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 222-493, gnl|bosTau2|chr11 (80575266-80574991) | |
| 222-493, gnl|Hg17|chr9 (129836792-129836525) | |
| 607-712, gnl|bosTau2|chr11 (80545901-80545796) | |
| 607-712, gnl|canFam2|chr9 (57249099-57248977) | |
| 607-712, gnl|danRer3|chr21 (1880011-1880124) | |
| 607-712, gnl|dasNov1|scaffold_194128 (575-452) | |
| 607-712, gnl|echTel1|scaffold_286927 (39248-39121) | |
| 607-712, gnl|fr1|chrUn (31031652-31031765) | |
| 607-712, gnl|galGal2|chr17 (5099515-5099391) | |
| 607-712, gnl|hg17|chr9 (129799172-129799300) | |
| 607-712, gnl|Hg17|chr9 (129799297-129799192) | |
| 607-712, gnl|loxAfr1|scaffold_4561 (53385-53504) | |
| 607-712, gnl|mm7|chr2 (31090280-31090392) | |
| 607-712, gnl|Mm7|chr2 (31090389-31090284) | |
| 607-712, gnl|monDom2|scaffold_51 (4998102-4998210) | |
| 607-712, gnl|oryCun1|scaffold_167488 (3891-4002) | |
| 607-712, gnl|panTro1|chr11 (114666176-114666305) | |
| 607-712, gnl|rheMac2|chr15 (8883787-8883659) | |
| 607-712, gnl|rn3|chr3 (10034930-10035050) | |
| 607-712, gnl|tetNig1|chrUn_random (2669853-2669964) | |
| 607-712, gnl|xenTro1|scaffold_82 (113936-114061) | |
| 832-988, gnl|bosTau2|chr11 (80518083-80517927) | |
| 832-988, gnl|Hg17|chr9 (129769183-129769027) | |
| 832-988, gnl|Mm7|chr2 (31062895-31062738) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) | |
| med (0.116252) | |
| eje (0.0988338) |