Ss1.1-LyN1-MLN01F070045.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCTTTCACCCTCTGTTGCCCCTTCAAGTCCCAAAGAAGTTGTCAATTTTGTTTCAAG AGGAGCTTCAAGTCACCAGCCCAGAATTCCCGTTTTTCCTGAAAACGGTTTGCAGCCGCA AGCAGAGCCCTTGCTTCCGAATAATATGAAGTCTGCCTGTGAAAACCGTTCGGGATGTGG TGGCTCTCCTCAGTCCAAGCCAAATTGCCCACCTCTTTCTCCACCGATGCCGCTGCCCCA TCTGTTACCTTCAGTGACTGATGCCAGGTTGGCAGGACCTTCTGAGCATATTGATTCCTC AGTTACAGGGGTTCAAAGGTTTCGAGATACTCTGAAAGTGCCCTACAAGCTGGAATTAAA AAATGAACCAGGGAGAACAGATCTGAAGCACATTGTTATAGACGGCAGCAATGTTGCAAT TACCCATGGTCTGAAAAAGTTCTTTTCTTGTCGTGGAATTGCAATTGCGGTTGAATATTT TTGGAAGCTTGGCAACAGAAACATCACTGTATTTGTCCCACAGTGGAGAACAAGGCGTGA TCCTAATGTCACAGAACAGCACTTCTTAACCCAGCTCCAGGAGCTCGGAATATTATCTTT AACTCCTGCACGGATGGTCTTTGGAGAAAGAATTGCTTCTCATGATGACAGGTTTCTGCT GCACTTAGCAGACAAAACTGGTGGCATAATTGTAACAAATGATAACTTCAGAGAATTTGT GACTGAGTCAGCCTCTTGGAGAGAAATAATTACAAAAAGGTTGCTCCAGTATACCTTCGT GGGGGACATATTTATGGTTCCCGATGATCCTCTGGGAAGAAGCGGACCTCGATTAGAAGA ATTTCTTCGGAAGGAAGTCTTCCTTAGAGATATGCAGCCCCTGCTCAACGCCCTGCCAAA TGTGGGCATATTTGACCCCAACTTCAGAGTCCCTGGCCCTCAGGCAGGCAGCACCAGCCA TGTTGAAAAGGTCCGGATCCAGGGCACGCCACCCAGCCACTGGCTTCCTCAGCAACCCCG CTTCCCGCTGTTGTCGAACCTGTCCAGCATCCAGCAGAACCTGCCCATGCCAGCACAGCG ATCTGCTGCCGAAACCAACGAGCTGAGGGAAGCCCTTCTGAAGATCTTCCCTGACTCAGA GCAAAGACTGAAAATCGACCAGATCTTAGCAGCTCATCCGTACATGAAAGATCTGAACGC GCTCTCCGCCATGGTGTTGGACTGAAGCTGTCAGGAGCTGGGGCTCAGGGCTGAGGACGC ACTCGCGCTGGTATCCGCACGGCACAGCCGCAAGTGACGTAATGTGAAGAAACCAATTTC CCAGTGGAAATGCTGTTGTAGTGTATAGAAAAAAAACAGATGTTCTGTGTATAAAAAAAA TCTGGGTTTTCAAAACCAGCTTTTTTTCTATATATAAATTATGCTGCTATTACAGATTTA ACATTTTCTGTAAAAGGAAAGTCTACATTTTCTGCCTGTTCAGAACTGTTTAATAGCAGT TACTCTTGAGTGTACTTACATTTTTATGTTTTTTAAACTATTTTCCTTAACGCTGAAAAT ATTGACAAATGGATATGATTAGCCTTTCTAAATAAAAAAAAAAAAAAGTTGCTTTCTTAG GGAAAGCAAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCTTTCACCCTCTGTTGCCCCTTCAAGTCCCAAAGAAGTTGTCAATTTTGTTTCAAG AGGAGCTTCAAGTCACCAGCCCAGAATTCCCGTTTTTCCTGAAAACGGTTTGCAGCCGCA AGCAGAGCCCTTGCTTCCGAATAATATGAAGTCTGCCTGTGAAAACCGTTCGGGATGTGG TGGCTCTCCTCAGTCCAAGCCAAATTGCCCACCTCTTTCTCCACCGATGCCGCTGCCCCA TCTGTTACCTTCAGTGACTGATGCCAGGTTGGCAGGACCTTCTGAGCATATTGATTCCTC AGTTACAGGGGTTCAAAGGTTTCGAGATACTCTGAAAGTGCCCTACAAGCTGGAATTAAA AAATGAACCAGGGAGAACAGATCTGAAGCACATTGTTATAGACGGCAGCAATGTTGCAAT TACCCATGGTCTGAAAAAGTTCTTTTCTTGTCGTGGAATTGCAATTGCGGTTGAATATTT TTGGAAGCTTGGCAACAGAAACATCACTGTATTTGTCCCACAGTGGAGAACAAGGCGTGA TCCTAATGTCACAGAACAGCACTTCTTAACCCAGCTCCAGGAGCTCGGAATATTATCTTT AACTCCTGCACGGATGGTCTTTGGAGAAAGAATTGCTTCTCATGATGACAGGTTTCTGCT GCACTTAGCAGACAAAACTGGTGGCATAATTGTAACAAATGATAACTTCAGAGAATTTGT GACTGAGTCAGCCTCTTGGAGAGAAATAATTACAAAAAGGTTGCTCCAGTATACCTTCGT GGGGGACATATTTATGGTTCCCGATGATCCTCTGGGAAGAAGCGGACCTCGATTAGAAGA ATTTCTTCGGAAGGAAGTCTTCCTTAGAGATATGCAGCCCCTGCTCAACGCCCTGCCAAA TGTGGGCATATTTGACCCCAACTTCAGAGTCCCTGGCCCTCAGGCAGGCAGCACCAGCCA TGTTGAAAAGGTCCGGATCCAGGGCACGCCACCCAGCCACTGGCTTCCTCAGCAACCCCG CTTCCCGCTGTTGTCGAACCTGTCCAGCATCCAGCAGAACCTGCCCATGCCAGCACAGCG ATCTGCTGCCGAAACCAACGAGCTGAGGGAAGCCCTTCTGAAGATCTTCCCTGACTCAGA GCAAAGACTGAAAATCGACCAGATCTTAGCAGCTCATCCGTACATGAAAGATCTGAACGC GCTCTCCGCCATGGTGTTGGACTGAAGCTGTCAGGAGCTGGGGCTCAGGGCTGAGGACGC ACTCGCGCTGGTATCCGCACGGCACAGCCGCAAGTGACGTAATGTGAAGAAACCAATTTC CCAGTGGAAATGCTGTTGTAGTGTATAGAAAAAAAACAGATGTTCTGTGTATAAAAAAAA TCTGGGTTTTCAAAACCAGCTTTTTTTCTATATATAAATTATGCTGCTATTACAGATTTA ACATTTTCTGTAAAAGGAAAGTCTACATTTTCTGCCTGTTCAGAACTGTTTAATAGCAGT TACTCTTGAGTGTACTTACATTTTTATGTTTTTTAAACTATTTTCCTTAACGCTGAAAAT ATTGACAAATGGATATGATTAGCCTTTCTAAATAAAAAAAAAAAAAAGTTGCTTTCTTAG GGAAAGCAAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 985-1104, - strand, RNAz p=0.687522 | |
| 1408-1527, - strand, RNAz p=0.904949 | |
| 1536-1631, + strand, RNAz p=0.752785 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 985-1104, - strand, RNAz p=0.687522 | |
| 1408-1527, - strand, RNAz p=0.904949 | |
| 1536-1631, + strand, RNAz p=0.752785 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-423, gnl|bosTau2|chr18 (17158082-17158504) | |
| 1-423, gnl|Hg17|chr16 (47152585-47152166) | |
| 1-423, gnl|Mm7|chr8 (85451262-85450843) | |
| 551-653, gnl|bosTau2|chr18 (17166706-17166808) | |
| 551-653, gnl|canFam2|chr2 (69443742-69443629) | |
| 551-653, gnl|danRer3|chr18 (17027820-17027928) | |
| 551-653, gnl|dasNov1|scaffold_32424 (10969-10868) | |
| 551-653, gnl|echTel1|scaffold_294287 (12059-12172) | |
| 551-653, gnl|fr1|chrUn (303624256-303624151) | |
| 551-653, gnl|galGal2|chr11 (7496997-7496889) | |
| 551-653, gnl|hg17|chr16 (47142786-47142899) | |
| 551-653, gnl|Hg17|chr16 (47142898-47142796) | |
| 551-653, gnl|mm7|chr8 (85442029-85442142) | |
| 551-653, gnl|Mm7|chr8 (85442141-85442039) | |
| 551-653, gnl|monDom2|scaffold_35 (12897093-12897206) | |
| 551-653, gnl|oryCun1|scaffold_97617 (9669-9556) | |
| 551-653, gnl|panTro1|chrUn_random (10966496-10966609) | |
| 551-653, gnl|rheMac2|chr20 (46744953-46745066) | |
| 551-653, gnl|rn3|chr19 (21605744-21605631) | |
| 551-653, gnl|tetNig1|chrUn_random (78837549-78837448) | |
| 551-653, gnl|xenTro1|scaffold_387 (1075430-1075317) | |
| 866-1631, gnl|bosTau2|chr18 (17173090-17173863) | |
| 866-1631, gnl|Hg17|chr16 (47134675-47133916) | |
| 866-1631, gnl|Mm7|chr8 (85435459-85434702) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-423, gnl|bosTau2|chr18 (17158082-17158504) | |
| 1-423, gnl|Hg17|chr16 (47152585-47152166) | |
| 1-423, gnl|Mm7|chr8 (85451262-85450843) | |
| 551-653, gnl|bosTau2|chr18 (17166706-17166808) | |
| 551-653, gnl|canFam2|chr2 (69443742-69443629) | |
| 551-653, gnl|danRer3|chr18 (17027820-17027928) | |
| 551-653, gnl|dasNov1|scaffold_32424 (10969-10868) | |
| 551-653, gnl|echTel1|scaffold_294287 (12059-12172) | |
| 551-653, gnl|fr1|chrUn (303624256-303624151) | |
| 551-653, gnl|galGal2|chr11 (7496997-7496889) | |
| 551-653, gnl|hg17|chr16 (47142786-47142899) | |
| 551-653, gnl|Hg17|chr16 (47142898-47142796) | |
| 551-653, gnl|mm7|chr8 (85442029-85442142) | |
| 551-653, gnl|Mm7|chr8 (85442141-85442039) | |
| 551-653, gnl|monDom2|scaffold_35 (12897093-12897206) | |
| 551-653, gnl|oryCun1|scaffold_97617 (9669-9556) | |
| 551-653, gnl|panTro1|chrUn_random (10966496-10966609) | |
| 551-653, gnl|rheMac2|chr20 (46744953-46745066) | |
| 551-653, gnl|rn3|chr19 (21605744-21605631) | |
| 551-653, gnl|tetNig1|chrUn_random (78837549-78837448) | |
| 551-653, gnl|xenTro1|scaffold_387 (1075430-1075317) | |
| 866-1631, gnl|bosTau2|chr18 (17173090-17173863) | |
| 866-1631, gnl|Hg17|chr16 (47134675-47133916) | |
| 866-1631, gnl|Mm7|chr8 (85435459-85434702) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbl (0.573987) | |
| cut (0.339847) | |
| hlv (0.278513) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ece (0.229305) | |
| aor (0.195274) | |
| mga (0.160205) | |
| lun (0.150489) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.573987) | |
| cut (0.339847) | |
| hlv (0.278513) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ece (0.229305) | |
| aor (0.195274) | |
| mga (0.160205) | |
| lun (0.150489) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |