Ss1.1-LyN1-MLN01F070103.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTTCAAGATGGCTGCGGGGATGTATTTGGAACATTATCTGGACAGTATTGAAAACCTG CCCTTTGAACTGCAGAGAAACTTCCAGCTCATGAGGGACCTGGACCAAAGAACAGAGGAC CTGAAGGCTGAAATTGACAAGTTGGCCACAGAGTATATGAGTAGCGCCCGCAGCCTGAGC TCCGAGGAAAAACTGGCCCTTCTCAAACAGATCCAGGAGGCCTATGGCAAGTGCAAGGAA TTTGGTGACGACAAGGTGCAGCTTGCCATGCAGACCTATGAAATGGTGGACAAACACATT CGTCGTCTGGACACAGACCTGGCCCGTTTTGAGGCTGATCTGAAAGAGAAACAGATTGAG TCAAGTGACTACGACAGCTCTTCCAGCAAAGGCAAAAAGAGCCGGACCCAAAAGGAGAAG AAAGCTGCCCGTGCTCGTTCCAAAGGGAAAAACTCCGACGAAGAAGCCCCCAAGGCTGCC CAGAAGAAGTTAAAACTCGTGCGCACAAGTCCTGAGTATGGGATGCCCTCAGTGACCTTT GGCAGTGTCCACCCCTCTGATGTGTTGGATATGCCTGTGGATCCCAACGAACCCACCTAT TGCCTTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTGTGACAACCCTGATTGTTCC ATTGAGTGGTTCCACTTTGCCTGTGTTGGGCTGACTACCAAGCCTCGGGGGAAGTGGTTT TGTCCACGCTGCTCCCAAGAACGGAAGAAGAAATAGACGAGGGCCTTGGATTCCAACAGT TTCTTCCACATCCCCTGACCTGGGCTAATGGGGAGAGGGATGCCTGGCTGGGGCCGGGGG TCAGGGAGAAGTGGATGGAGCAGTGTCGTCATCCCTCCTCCTCCCCTCCCCACTCCTGGT GCTGAGGCTGCACCCAGACCCTGGCAGGGAGGGGTGCCGCAGCCAGTAACGGTATGTGCT CTCATTCAGCCCACCCCCTTCGGAGAGAAGTGGTCTCGCCCACTGTCCTTTTGCCTCCAT GCTGAGGTTGGTGCTGTATTTTCGAGGGATGGTCCTCTTCACTCCCCTTGTTTGTATTTA AGGACTGGGGCGGTAGCATGGGGCCCGCCCCCCAGCCTGCTGGTTTCCTCCCCTTGGGGG GGGTTTGGGCCATGACGTGAAAAACTTTCTTCACTCTCTTCCTGCCTTTTCTAGCTGGGG CTCCCCCACATCATCTGGGCCGGACCCTAGCTGAAGGGGCACCCTTCCTCTGTGCCAAGA GGGTTGATCCTGGCCTTGTGAGTGGGCGGGGCAGGGCGGCGTGCAGGCATCGCGCATGTA AAGGAATGGGCAGGTGAATAAAAGCTATACGTGTTGGCCTGCTGTGTTTATTGTAGAGAT ACTATTTTAGCACCCGTGCTGAGCATATTTTTGCATCCTCTGAGTTGGCTAAAAGGCGGG AGGATGACATGCCAGAAGTAGGACAAGACATGGGACCAGAAGTGATACCTCTGCCCCAGA ATCCACAACTTCTCAACTTGGAAAGCACAGAGCTGGCTGGGGACTGTGCCTCAGACCAGG GGTCTCCAAAAATGTTTAAGATTGTGCATCTTTTCTCCATAAAATATCTTTCACTTAATT TCTAATAAATGTGTACTTGTGTTTTATACATGAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTTCAAGATGGCTGCGGGGATGTATTTGGAACATTATCTGGACAGTATTGAAAACCTG CCCTTTGAACTGCAGAGAAACTTCCAGCTCATGAGGGACCTGGACCAAAGAACAGAGGAC CTGAAGGCTGAAATTGACAAGTTGGCCACAGAGTATATGAGTAGCGCCCGCAGCCTGAGC TCCGAGGAAAAACTGGCCCTTCTCAAACAGATCCAGGAGGCCTATGGCAAGTGCAAGGAA TTTGGTGACGACAAGGTGCAGCTTGCCATGCAGACCTATGAAATGGTGGACAAACACATT CGTCGTCTGGACACAGACCTGGCCCGTTTTGAGGCTGATCTGAAAGAGAAACAGATTGAG TCAAGTGACTACGACAGCTCTTCCAGCAAAGGCAAAAAGAGCCGGACCCAAAAGGAGAAG AAAGCTGCCCGTGCTCGTTCCAAAGGGAAAAACTCCGACGAAGAAGCCCCCAAGGCTGCC CAGAAGAAGTTAAAACTCGTGCGCACAAGTCCTGAGTATGGGATGCCCTCAGTGACCTTT GGCAGTGTCCACCCCTCTGATGTGTTGGATATGCCTGTGGATCCCAACGAACCCACCTAT TGCCTTTGTCACCAGGTCTCCTATGGAGAGATGATTGGCTGTGACAACCCTGATTGTTCC ATTGAGTGGTTCCACTTTGCCTGTGTTGGGCTGACTACCAAGCCTCGGGGGAAGTGGTTT TGTCCACGCTGCTCCCAAGAACGGAAGAAGAAATAGACGAGGGCCTTGGATTCCAACAGT TTCTTCCACATCCCCTGACCTGGGCTAATGGGGAGAGGGATGCCTGGCTGGGGCCGGGGG TCAGGGAGAAGTGGATGGAGCAGTGTCGTCATCCCTCCTCCTCCCCTCCCCACTCCTGGT GCTGAGGCTGCACCCAGACCCTGGCAGGGAGGGGTGCCGCAGCCAGTAACGGTATGTGCT CTCATTCAGCCCACCCCCTTCGGAGAGAAGTGGTCTCGCCCACTGTCCTTTTGCCTCCAT GCTGAGGTTGGTGCTGTATTTTCGAGGGATGGTCCTCTTCACTCCCCTTGTTTGTATTTA AGGACTGGGGCGGTAGCATGGGGCCCGCCCCCCAGCCTGCTGGTTTCCTCCCCTTGGGGG GGGTTTGGGCCATGACGTGAAAAACTTTCTTCACTCTCTTCCTGCCTTTTCTAGCTGGGG CTCCCCCACATCATCTGGGCCGGACCCTAGCTGAAGGGGCACCCTTCCTCTGTGCCAAGA GGGTTGATCCTGGCCTTGTGAGTGGGCGGGGCAGGGCGGCGTGCAGGCATCGCGCATGTA AAGGAATGGGCAGGTGAATAAAAGCTATACGTGTTGGCCTGCTGTGTTTATTGTAGAGAT ACTATTTTAGCACCCGTGCTGAGCATATTTTTGCATCCTCTGAGTTGGCTAAAAGGCGGG AGGATGACATGCCAGAAGTAGGACAAGACATGGGACCAGAAGTGATACCTCTGCCCCAGA ATCCACAACTTCTCAACTTGGAAAGCACAGAGCTGGCTGGGGACTGTGCCTCAGACCAGG GGTCTCCAAAAATGTTTAAGATTGTGCATCTTTTCTCCATAAAATATCTTTCACTTAATT TCTAATAAATGTGTACTTGTGTTTTATACATGAACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 123-288, gnl|bosTau2|chr14 (8164029-8164194) | |
| 123-288, gnl|Hg17|chr2 (242368625-242368790) | |
| 123-288, gnl|Mm7|chr1 (93719595-93719760) | |
| 403-523, gnl|bosTau2|chr5 (61384378-61384259) | |
| 403-523, gnl|Hg17|chr12 (6632192-6632073) | |
| 403-523, gnl|Mm7|chr6 (125073111-125073230) | |
| 567-766, gnl|bosTau2|chr12 (45892568-45892768) | |
| 567-766, gnl|canFam2|chr22 (61912279-61912579) | |
| 567-766, gnl|canFam2|chr22 (61912597-61912317) | |
| 567-766, gnl|canFam2|chr22 (61912597-61912317) | |
| 567-766, gnl|danRer3|chr1 (41764583-41764306) | |
| 567-766, gnl|danRer3|chr9 (8501572-8501260) | |
| 567-766, gnl|danRer3|chr9 (8333250-8333530) | |
| 567-766, gnl|dasNov1|scaffold_34018 (49157-49457) | |
| 567-766, gnl|dasNov1|scaffold_34018 (49475-49195) | |
| 567-766, gnl|dasNov1|scaffold_34018 (49475-49195) | |
| 567-766, gnl|echTel1|scaffold_304630 (46196-46495) | |
| 567-766, gnl|echTel1|scaffold_304630 (46513-46234) | |
| 567-766, gnl|echTel1|scaffold_304630 (46513-46234) | |
| 567-766, gnl|fr1|chrUn (237042229-237042532) | |
| 567-766, gnl|fr1|chrUn (237042548-237042270) | |
| 567-766, gnl|fr1|chrUn (237042548-237042270) | |
| 567-766, gnl|galGal2|chr1 (132207760-132208060) | |
| 567-766, gnl|galGal2|chr1 (132208078-132207798) | |
| 567-766, gnl|galGal2|chr1 (132208078-132207798) | |
| 567-766, gnl|hg17|chr13 (110169965-110170265) | |
| 567-766, gnl|Hg17|chr13 (110170043-110170243) | |
| 567-766, gnl|hg17|chr9 (13312805-13313078) | |
| 567-766, gnl|hg17|chrX (70494953-70495200) | |
| 567-766, gnl|loxAfr1|scaffold_89285 (5925-5625) | |
| 567-766, gnl|loxAfr1|scaffold_89285 (5624-5887) | |
| 567-766, gnl|mm7|chr8 (11529817-11530117) | |
| 567-766, gnl|mm7|chr8 (11530135-11529855) | |
| 567-766, gnl|mm7|chr8 (11530135-11529855) | |
| 567-766, gnl|Mm7|chr8 (11529895-11530095) | |
| 567-766, gnl|monDom2|scaffold_11 (36288935-36288635) | |
| 567-766, gnl|monDom2|scaffold_11 (36288617-36288897) | |
| 567-766, gnl|monDom2|scaffold_11 (36288617-36288897) | |
| 567-766, gnl|oryCun1|scaffold_157627 (6196-5896) | |
| 567-766, gnl|oryCun1|scaffold_157627 (5880-6158) | |
| 567-766, gnl|oryCun1|scaffold_157627 (5880-6158) | |
| 567-766, gnl|panTro1|chr11 (13512671-13512940) | |
| 567-766, gnl|panTro1|chr14 (93612464-93612764) | |
| 567-766, gnl|panTro1|chrX (72763363-72763609) | |
| 567-766, gnl|rheMac2|chr15 (63605254-63604979) | |
| 567-766, gnl|rheMac2|chr17 (90774083-90774383) | |
| 567-766, gnl|rheMac2|chrX (70406234-70406478) | |
| 567-766, gnl|rn3|chr16 (82775784-82775484) | |
| 567-766, gnl|rn3|chr16 (82775466-82775746) | |
| 567-766, gnl|rn3|chr16 (82775466-82775746) | |
| 567-766, gnl|tetNig1|chr2 (9419604-9419301) | |
| 567-766, gnl|tetNig1|chr2 (9419283-9419563) | |
| 567-766, gnl|tetNig1|chr2 (9419283-9419563) | |
| 567-766, gnl|xenTro1|scaffold_998 (96189-96489) | |
| 567-766, gnl|xenTro1|scaffold_998 (96507-96227) | |
| 567-766, gnl|xenTro1|scaffold_998 (96507-96227) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-288, gnl|bosTau2|chr14 (8164029-8164194) | |
| 123-288, gnl|Hg17|chr2 (242368625-242368790) | |
| 123-288, gnl|Mm7|chr1 (93719595-93719760) | |
| 403-523, gnl|bosTau2|chr5 (61384378-61384259) | |
| 403-523, gnl|Hg17|chr12 (6632192-6632073) | |
| 403-523, gnl|Mm7|chr6 (125073111-125073230) | |
| 567-766, gnl|bosTau2|chr12 (45892568-45892768) | |
| 567-766, gnl|canFam2|chr22 (61912279-61912579) | |
| 567-766, gnl|canFam2|chr22 (61912597-61912317) | |
| 567-766, gnl|canFam2|chr22 (61912597-61912317) | |
| 567-766, gnl|danRer3|chr1 (41764583-41764306) | |
| 567-766, gnl|danRer3|chr9 (8501572-8501260) | |
| 567-766, gnl|danRer3|chr9 (8333250-8333530) | |
| 567-766, gnl|dasNov1|scaffold_34018 (49157-49457) | |
| 567-766, gnl|dasNov1|scaffold_34018 (49475-49195) | |
| 567-766, gnl|dasNov1|scaffold_34018 (49475-49195) | |
| 567-766, gnl|echTel1|scaffold_304630 (46196-46495) | |
| 567-766, gnl|echTel1|scaffold_304630 (46513-46234) | |
| 567-766, gnl|echTel1|scaffold_304630 (46513-46234) | |
| 567-766, gnl|fr1|chrUn (237042229-237042532) | |
| 567-766, gnl|fr1|chrUn (237042548-237042270) | |
| 567-766, gnl|fr1|chrUn (237042548-237042270) | |
| 567-766, gnl|galGal2|chr1 (132207760-132208060) | |
| 567-766, gnl|galGal2|chr1 (132208078-132207798) | |
| 567-766, gnl|galGal2|chr1 (132208078-132207798) | |
| 567-766, gnl|hg17|chr13 (110169965-110170265) | |
| 567-766, gnl|Hg17|chr13 (110170043-110170243) | |
| 567-766, gnl|hg17|chr9 (13312805-13313078) | |
| 567-766, gnl|hg17|chrX (70494953-70495200) | |
| 567-766, gnl|loxAfr1|scaffold_89285 (5925-5625) | |
| 567-766, gnl|loxAfr1|scaffold_89285 (5624-5887) | |
| 567-766, gnl|mm7|chr8 (11529817-11530117) | |
| 567-766, gnl|mm7|chr8 (11530135-11529855) | |
| 567-766, gnl|mm7|chr8 (11530135-11529855) | |
| 567-766, gnl|Mm7|chr8 (11529895-11530095) | |
| 567-766, gnl|monDom2|scaffold_11 (36288935-36288635) | |
| 567-766, gnl|monDom2|scaffold_11 (36288617-36288897) | |
| 567-766, gnl|monDom2|scaffold_11 (36288617-36288897) | |
| 567-766, gnl|oryCun1|scaffold_157627 (6196-5896) | |
| 567-766, gnl|oryCun1|scaffold_157627 (5880-6158) | |
| 567-766, gnl|oryCun1|scaffold_157627 (5880-6158) | |
| 567-766, gnl|panTro1|chr11 (13512671-13512940) | |
| 567-766, gnl|panTro1|chr14 (93612464-93612764) | |
| 567-766, gnl|panTro1|chrX (72763363-72763609) | |
| 567-766, gnl|rheMac2|chr15 (63605254-63604979) | |
| 567-766, gnl|rheMac2|chr17 (90774083-90774383) | |
| 567-766, gnl|rheMac2|chrX (70406234-70406478) | |
| 567-766, gnl|rn3|chr16 (82775784-82775484) | |
| 567-766, gnl|rn3|chr16 (82775466-82775746) | |
| 567-766, gnl|rn3|chr16 (82775466-82775746) | |
| 567-766, gnl|tetNig1|chr2 (9419604-9419301) | |
| 567-766, gnl|tetNig1|chr2 (9419283-9419563) | |
| 567-766, gnl|tetNig1|chr2 (9419283-9419563) | |
| 567-766, gnl|xenTro1|scaffold_998 (96189-96489) | |
| 567-766, gnl|xenTro1|scaffold_998 (96507-96227) | |
| 567-766, gnl|xenTro1|scaffold_998 (96507-96227) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| pla (0.401016) | |
| elu (0.385356) | |
| duo (0.345602) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| fce (0.271592) | |
| clu (0.239292) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| elu (0.385356) | |
| duo (0.345602) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| fce (0.271592) | |
| clu (0.239292) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) |