Non-Coding RNA Search

Ss1.1-LyN1-MLN01F080079.5

Sequence:


               
               GATCGCTCCGCTGAATCCGCCCGCGCGTCGCCGCCGTCGCCGCCGCCCCCCATCCCGGCC
CCCCCGGGTTCCCTCAGCCCAGCCCGGTCCAACCCGGTTCCCGGGAGGATGAAGTTCGTG
TATAAAGAAGAGCATCCGTTCGAGAAGCGTCGCTCTGAGGGCGAGAAGATCCGAAAGAAA
TACCCGGACCGGGTGCCGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTA
GATAAAAAGAAATACCTGGTGCCTTCTGATCTCACAGTTGGTCAGTTCTACTTCTTGATC
CGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTCAACAATGTCATT
CCACCCACCAGTGCCACGATGGGTCAGCTGTACCAGGAACACCATGAAGAAGACTTCTTT
CTGTACATTGCCTACAGTGATGAAAGTGTCTATGGTCTGTGAAGCTGCTGCCCTTAAGGT
CGGGGGTCCCATTCTTCAGACAGAGAGAGGTGGCCCACCTTCCTCGACCTGTCCTTCCTT
GAGGCTCAAACACCACCTCCTTTCTTCAGGACCTACACTTCCTAATGTTTGAGACTCTCC
TCCAGCCCTTCTTAAAACAAGGGTTAATGGGGGAGATGGCCTCCAGTACTCCTTTCCTTC
CCTTTCTCTACCACCTTCCCACTCAGCTTTAGACTTCTTGATTGTCCATCTCTGTCACAT
CCAGTGGTCGTTTTGGTTTCTGTTTCCTTTCTAACTGCCCAGGGGGCTCAGGATCCCAAC
AATCCCTTATTTTCACTACCTTCTTTTTGGGGGGTAGATGGAAGGGACTGAATTGTGGCG
GGGAAGGTAGGATACACATCAATAAAGAGGAAACCACCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCGCTCCGCTGAATCCGCCCGCGCGTCGCCGCCGTCGCCGCCGCCCCCCATCCCGGCC
CCCCCGGGTTCCCTCAGCCCAGCCCGGTCCAACCCGGTTCCCGGGAGGATGAAGTTCGTG
TATAAAGAAGAGCATCCGTTCGAGAAGCGTCGCTCTGAGGGCGAGAAGATCCGAAAGAAA
TACCCGGACCGGGTGCCGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTA
GATAAAAAGAAATACCTGGTGCCTTCTGATCTCACAGTTGGTCAGTTCTACTTCTTGATC
CGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTCAACAATGTCATT
CCACCCACCAGTGCCACGATGGGTCAGCTGTACCAGGAACACCATGAAGAAGACTTCTTT
CTGTACATTGCCTACAGTGATGAAAGTGTCTATGGTCTGTGAAGCTGCTGCCCTTAAGGT
CGGGGGTCCCATTCTTCAGACAGAGAGAGGTGGCCCACCTTCCTCGACCTGTCCTTCCTT
GAGGCTCAAACACCACCTCCTTTCTTCAGGACCTACACTTCCTAATGTTTGAGACTCTCC
TCCAGCCCTTCTTAAAACAAGGGTTAATGGGGGAGATGGCCTCCAGTACTCCTTTCCTTC
CCTTTCTCTACCACCTTCCCACTCAGCTTTAGACTTCTTGATTGTCCATCTCTGTCACAT
CCAGTGGTCGTTTTGGTTTCTGTTTCCTTTCTAACTGCCCAGGGGGCTCAGGATCCCAAC
AATCCCTTATTTTCACTACCTTCTTTTTGGGGGGTAGATGGAAGGGACTGAATTGTGGCG
GGGAAGGTAGGATACACATCAATAAAGAGGAAACCACCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18655903|pdb|1KOT|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18655903|pdb|1KOT|A

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               472-692, - strand, RNAz p=0.998351
               

               
               733-879, + strand, RNAz p=0.991109

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-692, - strand, RNAz p=0.998351
               

               
               733-879, + strand, RNAz p=0.991109

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007278, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007278, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-202, gnl|bosTau2|chr19 (20498583-20498381)
               

               
               1-202, gnl|Hg17|chr17 (7086481-7086280)
               

               
               1-202, gnl|Mm7|chr11 (70073177-70073380)
               


               
               393-879, gnl|bosTau2|chr19 (20497080-20496590)
               

               
               393-879, gnl|Hg17|chr17 (7084966-7084469)
               

               
               393-879, gnl|Mm7|chr11 (70076029-70076513)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-202, gnl|bosTau2|chr19 (20498583-20498381)
               

               
               1-202, gnl|Hg17|chr17 (7086481-7086280)
               

               
               1-202, gnl|Mm7|chr11 (70073177-70073380)
               


               
               393-879, gnl|bosTau2|chr19 (20497080-20496590)
               

               
               393-879, gnl|Hg17|chr17 (7084966-7084469)
               

               
               393-879, gnl|Mm7|chr11 (70076029-70076513)

Expressed library(ies): 55 entry(ies)

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Expressed library(ies): 55 entry(ies)

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               fcc (1.18671)
               

               
               cly (1.08578)
               

               
               cov (1.05722)
               

               
               nco (0.970403)
               

               
               med (0.930016)
               

               
               jej (0.890296)
               

               
               fbs (0.876732)
               

               
               hyp (0.85702)
               

               
               col (0.780031)
               

               
               hlv (0.696282)
               

               
               nbm (0.695272)
               

               
               mcp (0.682594)
               

               
               fhi (0.678311)
               

               
               ecc (0.575175)
               

               
               pty (0.570858)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               ese (0.506009)
               

               
               csp (0.483559)
               

               
               eru (0.480192)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               nlu (0.383362)
               

               
               eep (0.367692)
               

               
               clu (0.358938)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.18671)
               

               
               cly (1.08578)
               

               
               cov (1.05722)
               

               
               nco (0.970403)
               

               
               med (0.930016)
               

               
               jej (0.890296)
               

               
               fbs (0.876732)
               

               
               hyp (0.85702)
               

               
               col (0.780031)
               

               
               hlv (0.696282)
               

               
               nbm (0.695272)
               

               
               mcp (0.682594)
               

               
               fhi (0.678311)
               

               
               ecc (0.575175)
               

               
               pty (0.570858)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               ese (0.506009)
               

               
               csp (0.483559)
               

               
               eru (0.480192)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               nmm (0.398406)
               

               
               ute (0.398353)
               

               
               nlu (0.383362)
               

               
               eep (0.367692)
               

               
               clu (0.358938)
               

               
               pgl (0.35545)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	472-692, - strand, RNAz p=0.998351
	733-879, + strand, RNAz p=0.991109

	1-202, gnl\|bosTau2\|chr19 (20498583-20498381)
	1-202, gnl\|Hg17\|chr17 (7086481-7086280)
	1-202, gnl\|Mm7\|chr11 (70073177-70073380)

	393-879, gnl\|bosTau2\|chr19 (20497080-20496590)
	393-879, gnl\|Hg17\|chr17 (7084966-7084469)
	393-879, gnl\|Mm7\|chr11 (70076029-70076513)

	fcc (1.18671)
	cly (1.08578)
	cov (1.05722)
	nco (0.970403)
	med (0.930016)
	jej (0.890296)
	fbs (0.876732)
	hyp (0.85702)
	col (0.780031)
	hlv (0.696282)
	nbm (0.695272)
	mcp (0.682594)
	fhi (0.678311)
	ecc (0.575175)
	pty (0.570858)
	ton (0.526501)
	pro (0.512033)
	ese (0.506009)
	csp (0.483559)
	eru (0.480192)
	ece (0.45861)
	jca (0.45584)
	nms (0.427716)
	lnt (0.426925)
	amn (0.417711)
	nca (0.410621)
	nmm (0.398406)
	ute (0.398353)
	nlu (0.383362)
	eep (0.367692)
	clu (0.358938)
	pgl (0.35545)
	ill (0.351185)
	duo (0.345602)
	eye (0.341006)
	nje (0.33184)
	cli (0.305623)
	cag (0.302389)
	ebs (0.236602)
	tes (0.207814)
	hea (0.204499)
	eje (0.197668)
	nep (0.183925)
	gul (0.177588)
	sin (0.174948)
	tbr (0.154178)
	eli (0.151814)
	ste (0.135208)
	lyg (0.133103)
	cbr (0.127975)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)