Non-Coding RNA Search

Ss1.1-LyN1-MLN01F080080.5

Sequence:


               
               CCGGAAGCAGGGTGTCAGGCTCCGGTGCGGTGCGGCGGGGGACTGCGGCTCGAGCCTCAG
GTAACAGCAGAAGCAGCAATGTTTCACTTCTTCAGAAAGCCTCCGGAATCTAAAAAGCCC
TCAGTACCAGAGATGGAAGCAGATGGATTTGTCCTTTTAGGAGATACAGCGCATGAGCAA
AGAGTGGCAGAAAGAAGCAAAGCTTTAGATGTAGAAGGCAACCAGCATTTGGAGACCAGC
AAAGAAAACTCATCCAGTGTGACTGTAGCAAGCCCTGAGACGGAAAATAAGGCAGGCCAG
ACTCTGGAAAACAGCTCATTAATGGCCGAGCTTCTGAGCGACGTACCCTTCACCTTGGCC
CCACATGTGCTGGCCGTGCAGGGCACCATCAGAGACCTTCCTGACCACTTACTCTCCTAT
GATGTCAGCGAAAACTTATCAAGGTTTTGGTATGATTTCACTCTTGAAAACTCAGTACTC
CGTGATTCGTAATCTTTACCTCTGTTTGCATCTTAACAGCTCTAAAGACAAGTTTGCCTA
TTTAACCTGTCTGATGTTCTTAGCCATTTCACTATTTAAGGCCCTGAAAGGCCCTCAGAA
AAGCGAGGATCATAAAGCAAATAATATTATATTCATTGCTCTATTTTTTTAGAACAGAGC
GTATTTGTATAAAAATTGAACTTAAGATCAACTTCCTTTCCCCCACATAATATAAAAATT
AGTTTATCAAAGTTTTAAGAAAGGAGTAGTTTCTATCAACCCATCTCTCAAAACACAACA
CCTCAAGTTTACGTTAGAAGAACTGTGAAAAAGAACTGAGGCATTTTCTTTAGTTACCAC
AACCCTGAAGTCTCTCTTACAGTGAATGTGATTTTTGTTCTCTAGTTTGGAGGAAGATTG
AATTGATGTTTTTCCTTCCACTGTGTTTATGAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGAAGCAGGGTGTCAGGCTCCGGTGCGGTGCGGCGGGGGACTGCGGCTCGAGCCTCAG
GTAACAGCAGAAGCAGCAATGTTTCACTTCTTCAGAAAGCCTCCGGAATCTAAAAAGCCC
TCAGTACCAGAGATGGAAGCAGATGGATTTGTCCTTTTAGGAGATACAGCGCATGAGCAA
AGAGTGGCAGAAAGAAGCAAAGCTTTAGATGTAGAAGGCAACCAGCATTTGGAGACCAGC
AAAGAAAACTCATCCAGTGTGACTGTAGCAAGCCCTGAGACGGAAAATAAGGCAGGCCAG
ACTCTGGAAAACAGCTCATTAATGGCCGAGCTTCTGAGCGACGTACCCTTCACCTTGGCC
CCACATGTGCTGGCCGTGCAGGGCACCATCAGAGACCTTCCTGACCACTTACTCTCCTAT
GATGTCAGCGAAAACTTATCAAGGTTTTGGTATGATTTCACTCTTGAAAACTCAGTACTC
CGTGATTCGTAATCTTTACCTCTGTTTGCATCTTAACAGCTCTAAAGACAAGTTTGCCTA
TTTAACCTGTCTGATGTTCTTAGCCATTTCACTATTTAAGGCCCTGAAAGGCCCTCAGAA
AAGCGAGGATCATAAAGCAAATAATATTATATTCATTGCTCTATTTTTTTAGAACAGAGC
GTATTTGTATAAAAATTGAACTTAAGATCAACTTCCTTTCCCCCACATAATATAAAAATT
AGTTTATCAAAGTTTTAAGAAAGGAGTAGTTTCTATCAACCCATCTCTCAAAACACAACA
CCTCAAGTTTACGTTAGAAGAACTGTGAAAAAGAACTGAGGCATTTTCTTTAGTTACCAC
AACCCTGAAGTCTCTCTTACAGTGAATGTGATTTTTGTTCTCTAGTTTGGAGGAAGATTG
AATTGATGTTTTTCCTTCCACTGTGTTTATGAATGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51475778|ref|XP_496853.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51475778|ref|XP_496853.1|

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               37-234, gnl|bosTau2|chr9 (8561949-8561754)
               


               
               57-164, gnl|bosTau2|chr4 (3441261-3441154)
               

               
               57-164, gnl|Hg17|chr7 (7486176-7486328)
               

               
               57-164, gnl|Mm7|chr6 (8228733-8228849)
               


               
               239-936, gnl|bosTau2|chr9 (8561651-8560972)
               

               
               239-936, gnl|Hg17|chr7 (7690157-7690860)
               

               
               239-936, gnl|Mm7|chr6 (8385239-8385942)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-234, gnl|bosTau2|chr9 (8561949-8561754)
               


               
               57-164, gnl|bosTau2|chr4 (3441261-3441154)
               

               
               57-164, gnl|Hg17|chr7 (7486176-7486328)
               

               
               57-164, gnl|Mm7|chr6 (8228733-8228849)
               


               
               239-936, gnl|bosTau2|chr9 (8561651-8560972)
               

               
               239-936, gnl|Hg17|chr7 (7690157-7690860)
               

               
               239-936, gnl|Mm7|chr6 (8385239-8385942)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	37-234, gnl\|bosTau2\|chr9 (8561949-8561754)

	57-164, gnl\|bosTau2\|chr4 (3441261-3441154)
	57-164, gnl\|Hg17\|chr7 (7486176-7486328)
	57-164, gnl\|Mm7\|chr6 (8228733-8228849)

	239-936, gnl\|bosTau2\|chr9 (8561651-8560972)
	239-936, gnl\|Hg17\|chr7 (7690157-7690860)
	239-936, gnl\|Mm7\|chr6 (8385239-8385942)

	med (0.232504)
	mgp (0.230681)
	gul (0.177588)
	duo (0.172801)
	mga (0.160205)
	ssp (0.13552)
	bla (0.124347)
	pgl (0.118483)
	spc (0.113366)