Non-Coding RNA Search

Ss1.1-LyN1-MLN01F080094.5

Sequence:


               
               ATTTTGAACCTTCAGTGACACCTTTTCTTCTATTTGCTGCTCCTAAAGCTTAGAAATGTC
TAAAGCTCTGATTTAAAAGAAAATTTTTAACACATGGGATTGGATCTACCGCCTCCTTTT
TTTTTTTTTTAATAGCCAAGTTTAAAGGAGAGAGTACTTCTAAGTATAGTCGTTGGTTAA
ATGTCTTTTTTTCCTCCTGGGTTTCTTTTTAGGAACTACTGACAATCAAAAACCCATAGC
CGACTTTGGGATATGGCTTTATTATTCAGCACCTAAAAGATGAGTTCTAATTGGCAGACT
TCTGGCACTGGCACTTGTCCTCCTGTTTCTATAGAAACTGGGTTGGAAGTCAGAGCTGCA
CAAAGGGAAAGGGTAAGTTTCTTTTAAACTCCATATTTATAAACCCGTATCTTATTAACT
ATGGCTTGGTGTTTGTTTTCACATAAGGATATATACATTAGTGATCTGAAGCTCAAATAC
GAACTACTGATTTTTGCTTATGTGGAAATTGACATCAAGTCATTAAATGTAAGAGGAGGG
TTTAAATATGGATTTATTTTTCTTGTGACTCTGACTTCACATTTCTTGAAGCAGAGAACT
CAGTATAATAATTCTCACTTTGGGTTATATCTAATTTGGAGGTGATAAAATTGGTTTTTT
TCCTTTTAGATCTTACTCTATTATACTTTTCTGGTAAGTGAAAATTGGAATATAAAATAT
GTACAGAGGACGTTTTAAAAGTCTACATGATTTATAAGTCTCTTCCATGGAGCAAAGTAT
GGTTCTTTCTGTCATAAAACAATTACTGGGAGTTCCTGCTGTGACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGAACCTTCAGTGACACCTTTTCTTCTATTTGCTGCTCCTAAAGCTTAGAAATGTC
TAAAGCTCTGATTTAAAAGAAAATTTTTAACACATGGGATTGGATCTACCGCCTCCTTTT
TTTTTTTTTTAATAGCCAAGTTTAAAGGAGAGAGTACTTCTAAGTATAGTCGTTGGTTAA
ATGTCTTTTTTTCCTCCTGGGTTTCTTTTTAGGAACTACTGACAATCAAAAACCCATAGC
CGACTTTGGGATATGGCTTTATTATTCAGCACCTAAAAGATGAGTTCTAATTGGCAGACT
TCTGGCACTGGCACTTGTCCTCCTGTTTCTATAGAAACTGGGTTGGAAGTCAGAGCTGCA
CAAAGGGAAAGGGTAAGTTTCTTTTAAACTCCATATTTATAAACCCGTATCTTATTAACT
ATGGCTTGGTGTTTGTTTTCACATAAGGATATATACATTAGTGATCTGAAGCTCAAATAC
GAACTACTGATTTTTGCTTATGTGGAAATTGACATCAAGTCATTAAATGTAAGAGGAGGG
TTTAAATATGGATTTATTTTTCTTGTGACTCTGACTTCACATTTCTTGAAGCAGAGAACT
CAGTATAATAATTCTCACTTTGGGTTATATCTAATTTGGAGGTGATAAAATTGGTTTTTT
TCCTTTTAGATCTTACTCTATTATACTTTTCTGGTAAGTGAAAATTGGAATATAAAATAT
GTACAGAGGACGTTTTAAAAGTCTACATGATTTATAAGTCTCTTCCATGGAGCAAAGTAT
GGTTCTTTCTGTCATAAAACAATTACTGGGAGTTCCTGCTGTGACACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               240-359, - strand, RNAz p=0.689121
               

               
               400-517, + strand, RNAz p=0.880886

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.689121
               

               
               400-517, + strand, RNAz p=0.880886

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               411-538, + strand, RNAmicro p=0.999782

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               411-538, + strand, RNAmicro p=0.999782

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-808, gnl|bosTau2|chr3 (29671218-29672012)
               

               
               1-808, gnl|Hg17|chr1 (110610342-110611104)
               

               
               1-808, gnl|Mm7|chr3 (107135686-107135025)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-808, gnl|bosTau2|chr3 (29671218-29672012)
               

               
               1-808, gnl|Hg17|chr1 (110610342-110611104)
               

               
               1-808, gnl|Mm7|chr3 (107135686-107135025)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	240-359, - strand, RNAz p=0.689121
	400-517, + strand, RNAz p=0.880886

	1-808, gnl\|bosTau2\|chr3 (29671218-29672012)
	1-808, gnl\|Hg17\|chr1 (110610342-110611104)
	1-808, gnl\|Mm7\|chr3 (107135686-107135025)