Non-Coding RNA Search

Ss1.1-LyN1-MLN01F090002.5

Sequence:


               
               CTTTCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCGCCAACGCCAGCGCCGCC
TCTAGCTCGCCGAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTATACCA
TGGCTCGTACAAAGCAGACCGCCCGCAAATCGACTGGTGGTAAAGCACCGAGGAAGCAAC
TGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATC
GTTACAGGCCTGGTACCGTGGCACTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAAC
TTCTGATTCGCAAGCTTCCCTTCCAGCGTCTGGTGCGGGAAATTGCTCAGGACTTCAAAA
CAGATCTGCGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATC
TGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTA
TGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTA
TGATGGGAAACATTTCATTCTTTAAAAAAAAAAAAAATTCTCTTCTTCCTGTTATTGGTA
GTTCTGAACGTTAGATATTTTTTTTCCATGGGGTCAAAAGGTACCTAAGTATATGATTGC
AAGTGGAAAAATAGGGGACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTG
TGAATTTTTAATATAAATGCGGGGACATAAAGCATTAATGCAAGTCAAAATGTTTCAGTG
AACAAGTTTCAGCAGTTCAACTTTATAACAATTATAAATAAACCTGTTAAATTTTTCTGG
ACAATGCCAGCATTTGGATTTTTTTAAAACAAGTAAATTTCTTATTGACTGCAACTAAAT
GGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACT
GAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGT
AAGTTTGCTATTAAAATACATTAAACTATAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCGCCAACGCCAGCGCCGCC
TCTAGCTCGCCGAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTATACCA
TGGCTCGTACAAAGCAGACCGCCCGCAAATCGACTGGTGGTAAAGCACCGAGGAAGCAAC
TGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATC
GTTACAGGCCTGGTACCGTGGCACTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAAC
TTCTGATTCGCAAGCTTCCCTTCCAGCGTCTGGTGCGGGAAATTGCTCAGGACTTCAAAA
CAGATCTGCGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATC
TGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTA
TGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTA
TGATGGGAAACATTTCATTCTTTAAAAAAAAAAAAAATTCTCTTCTTCCTGTTATTGGTA
GTTCTGAACGTTAGATATTTTTTTTCCATGGGGTCAAAAGGTACCTAAGTATATGATTGC
AAGTGGAAAAATAGGGGACAGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTG
TGAATTTTTAATATAAATGCGGGGACATAAAGCATTAATGCAAGTCAAAATGTTTCAGTG
AACAAGTTTCAGCAGTTCAACTTTATAACAATTATAAATAAACCTGTTAAATTTTTCTGG
ACAATGCCAGCATTTGGATTTTTTTAAAACAAGTAAATTTCTTATTGACTGCAACTAAAT
GGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACT
GAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGT
AAGTTTGCTATTAAAATACATTAAACTATAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27370860|gb|AAH41218.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27370860|gb|AAH41218.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               112-511, - strand, RNAz p=0.860345

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-511, - strand, RNAz p=0.860345

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               33-1060, gnl|bosTau2|chr11 (1692845-1691824)
               

               
               33-1060, gnl|Hg17|chr2 (175410056-175411085)
               

               
               33-1060, gnl|Mm7|chr16 (91164587-91163562)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-1060, gnl|bosTau2|chr11 (1692845-1691824)
               

               
               33-1060, gnl|Hg17|chr2 (175410056-175411085)
               

               
               33-1060, gnl|Mm7|chr16 (91164587-91163562)

Expressed library(ies): 92 entry(ies)

More info

Expressed library(ies): 92 entry(ies)

Help | Less info


               
               fce (2.98751)
               

               
               mgp (2.76817)
               

               
               fty (2.63759)
               

               
               cst (2.52066)
               

               
               ova (2.45351)
               

               
               cje (2.31328)
               

               
               hea (2.24949)
               

               
               lin (2.18404)
               

               
               bfe (2.09801)
               

               
               kid (2.07577)
               

               
               che (2.04471)
               

               
               thg (2.02865)
               

               
               spl (2.00458)
               

               
               ecc (1.9556)
               

               
               mga (1.92246)
               

               
               rec (1.90377)
               

               
               nco (1.77907)
               

               
               tra (1.72329)
               

               
               liv (1.60913)
               

               
               pro (1.5361)
               

               
               mgm (1.44274)
               

               
               ret (1.41607)
               

               
               fbs (1.40277)
               

               
               sug (1.4002)
               

               
               nlu (1.34177)
               

               
               nje (1.32736)
               

               
               lnt (1.28077)
               

               
               cbr (1.27975)
               

               
               tes (1.24688)
               

               
               mcp (1.19454)
               

               
               pan (1.1798)
               

               
               fat (1.17942)
               

               
               cki (1.15664)
               

               
               elu (1.15607)
               

               
               ski (1.02715)
               

               
               spc (1.02029)
               

               
               pty (0.999001)
               

               
               vin (0.997672)
               

               
               bla (0.994777)
               

               
               eje (0.988338)
               

               
               csk (0.985222)
               

               
               aor (0.976372)
               

               
               ebs (0.94641)
               

               
               jca (0.911681)
               

               
               eye (0.852515)
               

               
               cga (0.837287)
               

               
               pgl (0.829384)
               

               
               csp (0.805932)
               

               
               nmm (0.796813)
               

               
               fco (0.78604)
               

               
               eli (0.759071)
               

               
               cag (0.755972)
               

               
               sag (0.730861)
               

               
               cly (0.723851)
               

               
               sto (0.719295)
               

               
               clu (0.717875)
               

               
               ton (0.702001)
               

               
               med (0.697512)
               

               
               jej (0.692452)
               

               
               duo (0.691204)
               

               
               cov (0.660764)
               

               
               col (0.585023)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               nep (0.551775)
               

               
               ssp (0.542079)
               

               
               gul (0.532765)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               ldo (0.485013)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               hyp (0.42851)
               

               
               mas (0.42061)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

Expressed library(ies): 92 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (2.98751)
               

               
               mgp (2.76817)
               

               
               fty (2.63759)
               

               
               cst (2.52066)
               

               
               ova (2.45351)
               

               
               cje (2.31328)
               

               
               hea (2.24949)
               

               
               lin (2.18404)
               

               
               bfe (2.09801)
               

               
               kid (2.07577)
               

               
               che (2.04471)
               

               
               thg (2.02865)
               

               
               spl (2.00458)
               

               
               ecc (1.9556)
               

               
               mga (1.92246)
               

               
               rec (1.90377)
               

               
               nco (1.77907)
               

               
               tra (1.72329)
               

               
               liv (1.60913)
               

               
               pro (1.5361)
               

               
               mgm (1.44274)
               

               
               ret (1.41607)
               

               
               fbs (1.40277)
               

               
               sug (1.4002)
               

               
               nlu (1.34177)
               

               
               nje (1.32736)
               

               
               lnt (1.28077)
               

               
               cbr (1.27975)
               

               
               tes (1.24688)
               

               
               mcp (1.19454)
               

               
               pan (1.1798)
               

               
               fat (1.17942)
               

               
               cki (1.15664)
               

               
               elu (1.15607)
               

               
               ski (1.02715)
               

               
               spc (1.02029)
               

               
               pty (0.999001)
               

               
               vin (0.997672)
               

               
               bla (0.994777)
               

               
               eje (0.988338)
               

               
               csk (0.985222)
               

               
               aor (0.976372)
               

               
               ebs (0.94641)
               

               
               jca (0.911681)
               

               
               eye (0.852515)
               

               
               cga (0.837287)
               

               
               pgl (0.829384)
               

               
               csp (0.805932)
               

               
               nmm (0.796813)
               

               
               fco (0.78604)
               

               
               eli (0.759071)
               

               
               cag (0.755972)
               

               
               sag (0.730861)
               

               
               cly (0.723851)
               

               
               sto (0.719295)
               

               
               clu (0.717875)
               

               
               ton (0.702001)
               

               
               med (0.697512)
               

               
               jej (0.692452)
               

               
               duo (0.691204)
               

               
               cov (0.660764)
               

               
               col (0.585023)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               nep (0.551775)
               

               
               ssp (0.542079)
               

               
               gul (0.532765)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               ldo (0.485013)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               hyp (0.42851)
               

               
               mas (0.42061)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

	33-1060, gnl\|bosTau2\|chr11 (1692845-1691824)
	33-1060, gnl\|Hg17\|chr2 (175410056-175411085)
	33-1060, gnl\|Mm7\|chr16 (91164587-91163562)

	fce (2.98751)
	mgp (2.76817)
	fty (2.63759)
	cst (2.52066)
	ova (2.45351)
	cje (2.31328)
	hea (2.24949)
	lin (2.18404)
	bfe (2.09801)
	kid (2.07577)
	che (2.04471)
	thg (2.02865)
	spl (2.00458)
	ecc (1.9556)
	mga (1.92246)
	rec (1.90377)
	nco (1.77907)
	tra (1.72329)
	liv (1.60913)
	pro (1.5361)
	mgm (1.44274)
	ret (1.41607)
	fbs (1.40277)
	sug (1.4002)
	nlu (1.34177)
	nje (1.32736)
	lnt (1.28077)
	cbr (1.27975)
	tes (1.24688)
	mcp (1.19454)
	pan (1.1798)
	fat (1.17942)
	cki (1.15664)
	elu (1.15607)
	ski (1.02715)
	spc (1.02029)
	pty (0.999001)
	vin (0.997672)
	bla (0.994777)
	eje (0.988338)
	csk (0.985222)
	aor (0.976372)
	ebs (0.94641)
	jca (0.911681)
	eye (0.852515)
	cga (0.837287)
	pgl (0.829384)
	csp (0.805932)
	nmm (0.796813)
	fco (0.78604)
	eli (0.759071)
	cag (0.755972)
	sag (0.730861)
	cly (0.723851)
	sto (0.719295)
	clu (0.717875)
	ton (0.702001)
	med (0.697512)
	jej (0.692452)
	duo (0.691204)
	cov (0.660764)
	col (0.585023)
	cmu (0.55918)
	hlv (0.557025)
	nep (0.551775)
	ssp (0.542079)
	gul (0.532765)
	ill (0.526778)
	sin (0.524843)
	ldo (0.485013)
	tbr (0.462535)
	ece (0.45861)
	hyp (0.42851)
	mas (0.42061)
	nca (0.410621)
	lyg (0.399308)
	nbm (0.397298)
	fcc (0.39557)
	cut (0.339847)
	fhi (0.339155)
	cli (0.305623)
	sme (0.305437)
	isp (0.300752)
	ute (0.265569)
	ese (0.253004)
	eep (0.245128)
	eru (0.240096)
	nms (0.213858)
	cty (0.20816)
	ste (0.135208)
	pla (0.133672)
	cbl (0.114797)