Non-Coding RNA Search

Ss1.1-LyN1-MLN01F090070.5

Sequence:


               
               CGCTTCCGGAAGCCGGGCCTCCCTGCCGCTCTTTGCTCTGCACCGCTCGCCAGGCACTTG
CAGCTGGGAGCTCTCCTCTGGGCTGGCTGATCAAAGAGCAGGAAGCAGCGATGTCTGCTG
TGGGTTCTGCAGCTCCATACCTGCATCACCCTGCTGACAGTCACAGTGGCCGGGTGAGTT
TCCTGGGGACCCAGCTGCCCCCAGAGGTGGCATCCATGCTGCGGCTCCTGGGAGACCTGG
ACAGGGGCACGTTCAGAAGATTGTTGAAGCTGGTGGTCAGCAGCCTGCAGGGAGAAGACT
GCCGCGAGGCTGTGCAACGCCTCAGGGCTGGTGCAGACCTGCCTGAGGAGCGACTGGGTG
CCCTGATTGCTGGCATACACACCCTGCTCCAGCAGGCCCTCCGGCTGCCCCCGGCCAGCT
TGAAGCCTGATGCCTTCAAGAACCAGCTCCAGGAGCTCTGCATCCCCCAGGACCTGGTTG
TGGACTTGGCCAGTGTGGTGTTTGGGAGCCAGCGGCCTCTCCTTGACTCTGTGGCCAGGC
AGCAGGGAGCCTGGCTGCCCCACGTTGTCGACTTTAGGTGGAGGGTGGACGTGGCCATCT
CCACCAGCGCCCTGACCCGCTCCTTGCAGCCGAGCGTCCTGATGCAGCTGAAGCTTTCGG
ATGGATCCGCACACCTCTTCGAGGTCCCCACGGCCAAGTTCCAGGAGCTGAGGTTCGCCG
TGGCCCTGCTCCTGAAAGAGATGGCCGACCTGGAGAAGAGATGCGAGCGCAAACTGCAGG
ACTAACCCTCCCCCGCCAGTCCCCTTCTGGTCACCCCGGGGACAGCTGGCTCAGACGCTG
TCTCCAGAACGAAGCCCGGCCCCCACCCTCAGGAGGCCCTCCAGTGAGAGCGTTTGGGTG
AAACCACATCATTCTCTAAATGGAGGACAGCCGGGTCTTTCTTTTTTTTGGAAGTAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTCCGGAAGCCGGGCCTCCCTGCCGCTCTTTGCTCTGCACCGCTCGCCAGGCACTTG
CAGCTGGGAGCTCTCCTCTGGGCTGGCTGATCAAAGAGCAGGAAGCAGCGATGTCTGCTG
TGGGTTCTGCAGCTCCATACCTGCATCACCCTGCTGACAGTCACAGTGGCCGGGTGAGTT
TCCTGGGGACCCAGCTGCCCCCAGAGGTGGCATCCATGCTGCGGCTCCTGGGAGACCTGG
ACAGGGGCACGTTCAGAAGATTGTTGAAGCTGGTGGTCAGCAGCCTGCAGGGAGAAGACT
GCCGCGAGGCTGTGCAACGCCTCAGGGCTGGTGCAGACCTGCCTGAGGAGCGACTGGGTG
CCCTGATTGCTGGCATACACACCCTGCTCCAGCAGGCCCTCCGGCTGCCCCCGGCCAGCT
TGAAGCCTGATGCCTTCAAGAACCAGCTCCAGGAGCTCTGCATCCCCCAGGACCTGGTTG
TGGACTTGGCCAGTGTGGTGTTTGGGAGCCAGCGGCCTCTCCTTGACTCTGTGGCCAGGC
AGCAGGGAGCCTGGCTGCCCCACGTTGTCGACTTTAGGTGGAGGGTGGACGTGGCCATCT
CCACCAGCGCCCTGACCCGCTCCTTGCAGCCGAGCGTCCTGATGCAGCTGAAGCTTTCGG
ATGGATCCGCACACCTCTTCGAGGTCCCCACGGCCAAGTTCCAGGAGCTGAGGTTCGCCG
TGGCCCTGCTCCTGAAAGAGATGGCCGACCTGGAGAAGAGATGCGAGCGCAAACTGCAGG
ACTAACCCTCCCCCGCCAGTCCCCTTCTGGTCACCCCGGGGACAGCTGGCTCAGACGCTG
TCTCCAGAACGAAGCCCGGCCCCCACCCTCAGGAGGCCCTCCAGTGAGAGCGTTTGGGTG
AAACCACATCATTCTCTAAATGGAGGACAGCCGGGTCTTTCTTTTTTTTGGAAGTAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41351318|gb|AAH65729.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41351318|gb|AAH65729.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               318-517, - strand, RNAz p=0.874412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-517, - strand, RNAz p=0.874412

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-960, gnl|bosTau2|chr14 (3166184-3165319)
               

               
               78-960, gnl|Hg17|chr8 (146047560-146046655)
               

               
               78-960, gnl|Mm7|chr15 (76982316-76983127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-960, gnl|bosTau2|chr14 (3166184-3165319)
               

               
               78-960, gnl|Hg17|chr8 (146047560-146046655)
               

               
               78-960, gnl|Mm7|chr15 (76982316-76983127)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mas (0.210305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	78-960, gnl\|bosTau2\|chr14 (3166184-3165319)
	78-960, gnl\|Hg17\|chr8 (146047560-146046655)
	78-960, gnl\|Mm7\|chr15 (76982316-76983127)

	mas (0.210305)
	fty (0.17584)
	ton (0.1755)
	mcp (0.170648)
	csp (0.161186)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	ese (0.126502)
	jca (0.11396)