Ss1.1-LyN1-MLN01F100020.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTTGCAAACCCCGCCCCGAGGCCGGTGCCGGTGTCCTGACCGCGGGGACCTGCACGAG CCCAGGCTGCGACCAGCCGCCCCCGGCCCGGAAGCCGCAGCGCCCCAGCAAGGGCCGAAC GCCTGGTTCCCCGCGGCAGGAAGTGCAGGTCGGAGCGGTAACTGCGGGAACGGCGAGGCC GGGCGGAAGAGCACGTCGGCCGCGCTGGCGTGAGCGTCCGTCTGGGGGTCTTCCCGGAGA GATCTCCCTTCGTTCTTGATTGAAGCTGCAGGATGGTGTCCTGGATGATCTGTCGTCTGG TGGTGCTGGTGTTTGGGATGCTGTACCCAGCGTATGCTTCCTACAAGGCTGTGAAGACTA AGAACATTCGTGAATATGTCCGGTGGATGATGTACTGGATCGTCTTTGCGCTCTTCATGG CGGTGGAGACCTTCACAGACATCTTTGTTTCCTGGTTCCCTTTCTACTACGAGATCAAGA TGGCCTTCGTGCTGTGGCTGCTTTCCCCCTACACCAAGGGGGCCAGCCTGCTTTACCGCA AGTTCGTCCACCCATCCTTGTCTCGCCATGAGAAGGAGATCGACACCTACATCGTGCAGG CCAAGGAGCGCAGCTACGAGACAGTGCTCAGCTTTGGGAAGCGAGGCCTCAACATTGCCG CTTCAGCCGCCGTACAGGCTGCCACCAAGAGTCAGGGTGCGCTGGCCGGAAGGCTGCGGA GCTTCTCCATGCAGGACCTGCGCTCCATCCCCGACGACTCCACCCCCGTCTACCAGGATC CCCTCTACCTGGAGGACCAGGTACCCCGCCGCAGGCCACCCATTGGGTACCGGGCAGGGG GCCTACAGGACAGTGACACCGAGGAGGAGTGTTGGTCAGATACAGAAGCAGTCCCCCAGC CGCCAGCCCGGCCCCGAGAGAAGCCTCTGGGCCGCAGTCAGAGCCTGCGTTTGGCCAAGA GAAAGCCGCTCACGCGGGAGGGCACCTCGCGCTCCCTGAAGGTTCGGACGAGGAAAAAGA CTGCGCCCTCAGACATGGACAGCTAGGGTCTGTGGAGCCTGGCCCAGTCTTACCTCATGC TCTGCAGGGCACTGGGGACTGTTTGAAGGGGACCTCTGGCTGCACACACGTCTGGCCTGC CTGCACCAGCTGCCCAGGTGCCGCCTTCTTGGCTGTTGGTCATGGGCCAAGGGCAGGTGC TGCCAGCGCCATGCACAGGGCTGCGCTCATGATGTACCAAAGCAGGCTGGGTCCACGGTT CTATTTATTGCCTTCTTCTCCCCTCTACCTTGCCAGGTGTGGGACCAGAGCCCTCCCAGG CCCCTGGAAAATGAAACCAAAGCCCACTCTGGCCCTGTCCTTCAAAGTACTTGACAGCCT TCTCTGAGGCCGTGTGTGTGTCCTGGTTGTATGGTTTGTGTCGGTGAATGGGGTCAGGTT TGTGGATGTTTTGATAAATAAATACATAAAAGCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTTGCAAACCCCGCCCCGAGGCCGGTGCCGGTGTCCTGACCGCGGGGACCTGCACGAG CCCAGGCTGCGACCAGCCGCCCCCGGCCCGGAAGCCGCAGCGCCCCAGCAAGGGCCGAAC GCCTGGTTCCCCGCGGCAGGAAGTGCAGGTCGGAGCGGTAACTGCGGGAACGGCGAGGCC GGGCGGAAGAGCACGTCGGCCGCGCTGGCGTGAGCGTCCGTCTGGGGGTCTTCCCGGAGA GATCTCCCTTCGTTCTTGATTGAAGCTGCAGGATGGTGTCCTGGATGATCTGTCGTCTGG TGGTGCTGGTGTTTGGGATGCTGTACCCAGCGTATGCTTCCTACAAGGCTGTGAAGACTA AGAACATTCGTGAATATGTCCGGTGGATGATGTACTGGATCGTCTTTGCGCTCTTCATGG CGGTGGAGACCTTCACAGACATCTTTGTTTCCTGGTTCCCTTTCTACTACGAGATCAAGA TGGCCTTCGTGCTGTGGCTGCTTTCCCCCTACACCAAGGGGGCCAGCCTGCTTTACCGCA AGTTCGTCCACCCATCCTTGTCTCGCCATGAGAAGGAGATCGACACCTACATCGTGCAGG CCAAGGAGCGCAGCTACGAGACAGTGCTCAGCTTTGGGAAGCGAGGCCTCAACATTGCCG CTTCAGCCGCCGTACAGGCTGCCACCAAGAGTCAGGGTGCGCTGGCCGGAAGGCTGCGGA GCTTCTCCATGCAGGACCTGCGCTCCATCCCCGACGACTCCACCCCCGTCTACCAGGATC CCCTCTACCTGGAGGACCAGGTACCCCGCCGCAGGCCACCCATTGGGTACCGGGCAGGGG GCCTACAGGACAGTGACACCGAGGAGGAGTGTTGGTCAGATACAGAAGCAGTCCCCCAGC CGCCAGCCCGGCCCCGAGAGAAGCCTCTGGGCCGCAGTCAGAGCCTGCGTTTGGCCAAGA GAAAGCCGCTCACGCGGGAGGGCACCTCGCGCTCCCTGAAGGTTCGGACGAGGAAAAAGA CTGCGCCCTCAGACATGGACAGCTAGGGTCTGTGGAGCCTGGCCCAGTCTTACCTCATGC TCTGCAGGGCACTGGGGACTGTTTGAAGGGGACCTCTGGCTGCACACACGTCTGGCCTGC CTGCACCAGCTGCCCAGGTGCCGCCTTCTTGGCTGTTGGTCATGGGCCAAGGGCAGGTGC TGCCAGCGCCATGCACAGGGCTGCGCTCATGATGTACCAAAGCAGGCTGGGTCCACGGTT CTATTTATTGCCTTCTTCTCCCCTCTACCTTGCCAGGTGTGGGACCAGAGCCCTCCCAGG CCCCTGGAAAATGAAACCAAAGCCCACTCTGGCCCTGTCCTTCAAAGTACTTGACAGCCT TCTCTGAGGCCGTGTGTGTGTCCTGGTTGTATGGTTTGTGTCGGTGAATGGGGTCAGGTT TGTGGATGTTTTGATAAATAAATACATAAAAGCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 744-863, - strand, RNAz p=0.850967 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 744-863, - strand, RNAz p=0.850967 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-200, gnl|bosTau2|chr8 (31439719-31439929) | |
| 1-200, gnl|Mm7|chr14 (65189777-65189975) | |
| 454-576, gnl|bosTau2|chr8 (31441625-31441747) | |
| 454-576, gnl|canFam2|chr25 (38100342-38100213) | |
| 454-576, gnl|danRer3|chr14 (17519488-17519614) | |
| 454-576, gnl|dasNov1|scaffold_234998 (1396-1267) | |
| 454-576, gnl|echTel1|scaffold_323782 (47406-47532) | |
| 454-576, gnl|fr1|chrUn (114135602-114135728) | |
| 454-576, gnl|hg17|chr8 (22053416-22053545) | |
| 454-576, gnl|Hg17|chr8 (22053542-22053420) | |
| 454-576, gnl|loxAfr1|scaffold_16625 (28380-28251) | |
| 454-576, gnl|mm7|chr14 (65191726-65191597) | |
| 454-576, gnl|Mm7|chr14 (65191598-65191720) | |
| 454-576, gnl|monDom2|scaffold_1 (73465199-73465070) | |
| 454-576, gnl|oryCun1|scaffold_78508 (1330-1459) | |
| 454-576, gnl|panTro1|chr7 (22985936-22986065) | |
| 454-576, gnl|rheMac2|chr8 (22063215-22063344) | |
| 454-576, gnl|rn3|chr15 (50964173-50964044) | |
| 454-576, gnl|tetNig1|chr1 (973883-973759) | |
| 688-863, gnl|bosTau2|chr8 (31442608-31442782) | |
| 688-863, gnl|Hg17|chr8 (22052521-22052353) | |
| 688-863, gnl|Mm7|chr14 (65192422-65192575) | |
| 979-1125, gnl|bosTau2|chr8 (31443147-31443291) | |
| 979-1125, gnl|canFam2|chr25 (38102030-38101861) | |
| 979-1125, gnl|dasNov1|scaffold_44592 (755-931) | |
| 979-1125, gnl|hg17|chr8 (22051777-22051960) | |
| 979-1125, gnl|Hg17|chr8 (22052012-22051851) | |
| 979-1125, gnl|loxAfr1|scaffold_16625 (30085-29900) | |
| 979-1125, gnl|mm7|chr14 (65193101-65192966) | |
| 979-1125, gnl|Mm7|chr14 (65192912-65193039) | |
| 979-1125, gnl|monDom2|scaffold_1 (73468278-73467960) | |
| 979-1125, gnl|oryCun1|scaffold_78508 (240-349) | |
| 979-1125, gnl|panTro1|chr7 (22984297-22984480) | |
| 979-1125, gnl|rheMac2|chr8 (22061577-22061756) | |
| 979-1125, gnl|rn3|chr15 (50965534-50965410) | |
| 1216-1472, gnl|bosTau2|chr8 (31443343-31443630) | |
| 1216-1472, gnl|canFam2|chr25 (38102339-38102031) | |
| 1216-1472, gnl|dasNov1|scaffold_44592 (506-754) | |
| 1216-1472, gnl|echTel1|scaffold_313141 (140535-140245) | |
| 1216-1472, gnl|hg17|chr8 (22051482-22051776) | |
| 1216-1472, gnl|Hg17|chr8 (22051775-22051481) | |
| 1216-1472, gnl|loxAfr1|scaffold_16625 (30348-30086) | |
| 1216-1472, gnl|mm7|chr14 (65193403-65193102) | |
| 1216-1472, gnl|Mm7|chr14 (65193103-65193402) | |
| 1216-1472, gnl|monDom2|scaffold_1 (73468608-73468279) | |
| 1216-1472, gnl|oryCun1|scaffold_78508 (4-239) | |
| 1216-1472, gnl|panTro1|chr7 (22984002-22984296) | |
| 1216-1472, gnl|rheMac2|chr8 (22061312-22061576) | |
| 1216-1472, gnl|rn3|chr15 (50965824-50965535) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-200, gnl|bosTau2|chr8 (31439719-31439929) | |
| 1-200, gnl|Mm7|chr14 (65189777-65189975) | |
| 454-576, gnl|bosTau2|chr8 (31441625-31441747) | |
| 454-576, gnl|canFam2|chr25 (38100342-38100213) | |
| 454-576, gnl|danRer3|chr14 (17519488-17519614) | |
| 454-576, gnl|dasNov1|scaffold_234998 (1396-1267) | |
| 454-576, gnl|echTel1|scaffold_323782 (47406-47532) | |
| 454-576, gnl|fr1|chrUn (114135602-114135728) | |
| 454-576, gnl|hg17|chr8 (22053416-22053545) | |
| 454-576, gnl|Hg17|chr8 (22053542-22053420) | |
| 454-576, gnl|loxAfr1|scaffold_16625 (28380-28251) | |
| 454-576, gnl|mm7|chr14 (65191726-65191597) | |
| 454-576, gnl|Mm7|chr14 (65191598-65191720) | |
| 454-576, gnl|monDom2|scaffold_1 (73465199-73465070) | |
| 454-576, gnl|oryCun1|scaffold_78508 (1330-1459) | |
| 454-576, gnl|panTro1|chr7 (22985936-22986065) | |
| 454-576, gnl|rheMac2|chr8 (22063215-22063344) | |
| 454-576, gnl|rn3|chr15 (50964173-50964044) | |
| 454-576, gnl|tetNig1|chr1 (973883-973759) | |
| 688-863, gnl|bosTau2|chr8 (31442608-31442782) | |
| 688-863, gnl|Hg17|chr8 (22052521-22052353) | |
| 688-863, gnl|Mm7|chr14 (65192422-65192575) | |
| 979-1125, gnl|bosTau2|chr8 (31443147-31443291) | |
| 979-1125, gnl|canFam2|chr25 (38102030-38101861) | |
| 979-1125, gnl|dasNov1|scaffold_44592 (755-931) | |
| 979-1125, gnl|hg17|chr8 (22051777-22051960) | |
| 979-1125, gnl|Hg17|chr8 (22052012-22051851) | |
| 979-1125, gnl|loxAfr1|scaffold_16625 (30085-29900) | |
| 979-1125, gnl|mm7|chr14 (65193101-65192966) | |
| 979-1125, gnl|Mm7|chr14 (65192912-65193039) | |
| 979-1125, gnl|monDom2|scaffold_1 (73468278-73467960) | |
| 979-1125, gnl|oryCun1|scaffold_78508 (240-349) | |
| 979-1125, gnl|panTro1|chr7 (22984297-22984480) | |
| 979-1125, gnl|rheMac2|chr8 (22061577-22061756) | |
| 979-1125, gnl|rn3|chr15 (50965534-50965410) | |
| 1216-1472, gnl|bosTau2|chr8 (31443343-31443630) | |
| 1216-1472, gnl|canFam2|chr25 (38102339-38102031) | |
| 1216-1472, gnl|dasNov1|scaffold_44592 (506-754) | |
| 1216-1472, gnl|echTel1|scaffold_313141 (140535-140245) | |
| 1216-1472, gnl|hg17|chr8 (22051482-22051776) | |
| 1216-1472, gnl|Hg17|chr8 (22051775-22051481) | |
| 1216-1472, gnl|loxAfr1|scaffold_16625 (30348-30086) | |
| 1216-1472, gnl|mm7|chr14 (65193403-65193102) | |
| 1216-1472, gnl|Mm7|chr14 (65193103-65193402) | |
| 1216-1472, gnl|monDom2|scaffold_1 (73468608-73468279) | |
| 1216-1472, gnl|oryCun1|scaffold_78508 (4-239) | |
| 1216-1472, gnl|panTro1|chr7 (22984002-22984296) | |
| 1216-1472, gnl|rheMac2|chr8 (22061312-22061576) | |
| 1216-1472, gnl|rn3|chr15 (50965824-50965535) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cga (0.279096) | |
| cov (0.264306) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| cov (0.264306) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cly (0.120642) | |
| eje (0.0988338) |