Non-Coding RNA Search

Ss1.1-LyN1-MLN01F110013.5

Sequence:


               
               AGTGGGGTGTGAAGATGGCGGACGAAGAGGCCGAGCAGGAGAGGTTGAGTCGCAGCAGAG
GCGGCTGCGCCGCGGAGCTGCAGCGCCTGAGCGAGCGGCTCCAGGAGCTGGAGCGGCAGC
TGCGGGAGAGCCGGGTGCCGGCCGTGGAGGCGGCCACGGAGTACTGTCAGCAGCTGTGCC
AGACACTCCTTGAATATGCAGAGAAATGGAAAACTTCAGAAGATCCTTTACCTTTATTGG
AGGTATACACAGTGGCTATCCAAAGTTATGTTAAAGCCCGACCTTATCTTACCTCTGAAT
GTGAAAATGTAGCATTGGTTCTGGAACGCTTGGCATTAAGCTGTGTTGAACTTTTACTGT
GTCTGCCTGTTGAATTATCTGATAAACAGTGGGAACAATTTCAGACACTAGTGCAGGTAG
CTCATGAAAAGCTGATGGAGAATGGCAGCTGTGAATTGCATTTTTTAGCTACTCTAGCTC
AAGAAACTGGGGTGTGGAAAAACCCGGTACTGTGCACTATTCTTTCCCAGGAACCATTGG
ATAAGGATAAAGGTAAATTTTCTAGAGAGAGAGAGAGAGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGGGTGTGAAGATGGCGGACGAAGAGGCCGAGCAGGAGAGGTTGAGTCGCAGCAGAG
GCGGCTGCGCCGCGGAGCTGCAGCGCCTGAGCGAGCGGCTCCAGGAGCTGGAGCGGCAGC
TGCGGGAGAGCCGGGTGCCGGCCGTGGAGGCGGCCACGGAGTACTGTCAGCAGCTGTGCC
AGACACTCCTTGAATATGCAGAGAAATGGAAAACTTCAGAAGATCCTTTACCTTTATTGG
AGGTATACACAGTGGCTATCCAAAGTTATGTTAAAGCCCGACCTTATCTTACCTCTGAAT
GTGAAAATGTAGCATTGGTTCTGGAACGCTTGGCATTAAGCTGTGTTGAACTTTTACTGT
GTCTGCCTGTTGAATTATCTGATAAACAGTGGGAACAATTTCAGACACTAGTGCAGGTAG
CTCATGAAAAGCTGATGGAGAATGGCAGCTGTGAATTGCATTTTTTAGCTACTCTAGCTC
AAGAAACTGGGGTGTGGAAAAACCCGGTACTGTGCACTATTCTTTCCCAGGAACCATTGG
ATAAGGATAAAGGTAAATTTTCTAGAGAGAGAGAGAGAGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZW83_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZW83_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               65-182, + strand, RNAz p=0.814922
               

               
               472-588, + strand, RNAz p=0.879976

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-182, + strand, RNAz p=0.814922
               

               
               472-588, + strand, RNAz p=0.879976

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-182, gnl|bosTau2|chr9 (35089804-35089623)
               

               
               1-182, gnl|canFam2|chr12 (49686598-49686787)
               

               
               1-182, gnl|danRer3|chr20 (606078-606261)
               

               
               1-182, gnl|dasNov1|scaffold_7519 (17139-17328)
               

               
               1-182, gnl|echTel1|scaffold_284005 (1194-1383)
               

               
               1-182, gnl|galGal2|chr3 (74917633-74917450)
               

               
               1-182, gnl|hg17|chr6 (87922016-87922205)
               

               
               1-182, gnl|Hg17|chr6 (87922015-87922196)
               

               
               1-182, gnl|loxAfr1|scaffold_724 (6726-6915)
               

               
               1-182, gnl|mm7|chr4 (35021613-35021433)
               

               
               1-182, gnl|Mm7|chr4 (35021612-35021437)
               

               
               1-182, gnl|monDom2|scaffold_0 (142065153-142064964)
               

               
               1-182, gnl|oryCun1|scaffold_198549 (71593-71782)
               

               
               1-182, gnl|panTro1|chr5 (89625340-89625529)
               

               
               1-182, gnl|rn3|chr5 (51518985-51518805)
               


               
               415-588, gnl|bosTau2|chr9 (35034949-35034775)
               

               
               415-588, gnl|Hg17|chr6 (87985031-87985200)
               

               
               415-588, gnl|Mm7|chr4 (34978148-34977979)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr9 (35089804-35089623)
               

               
               1-182, gnl|canFam2|chr12 (49686598-49686787)
               

               
               1-182, gnl|danRer3|chr20 (606078-606261)
               

               
               1-182, gnl|dasNov1|scaffold_7519 (17139-17328)
               

               
               1-182, gnl|echTel1|scaffold_284005 (1194-1383)
               

               
               1-182, gnl|galGal2|chr3 (74917633-74917450)
               

               
               1-182, gnl|hg17|chr6 (87922016-87922205)
               

               
               1-182, gnl|Hg17|chr6 (87922015-87922196)
               

               
               1-182, gnl|loxAfr1|scaffold_724 (6726-6915)
               

               
               1-182, gnl|mm7|chr4 (35021613-35021433)
               

               
               1-182, gnl|Mm7|chr4 (35021612-35021437)
               

               
               1-182, gnl|monDom2|scaffold_0 (142065153-142064964)
               

               
               1-182, gnl|oryCun1|scaffold_198549 (71593-71782)
               

               
               1-182, gnl|panTro1|chr5 (89625340-89625529)
               

               
               1-182, gnl|rn3|chr5 (51518985-51518805)
               


               
               415-588, gnl|bosTau2|chr9 (35034949-35034775)
               

               
               415-588, gnl|Hg17|chr6 (87985031-87985200)
               

               
               415-588, gnl|Mm7|chr4 (34978148-34977979)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	65-182, + strand, RNAz p=0.814922
	472-588, + strand, RNAz p=0.879976

	1-182, gnl\|bosTau2\|chr9 (35089804-35089623)
	1-182, gnl\|canFam2\|chr12 (49686598-49686787)
	1-182, gnl\|danRer3\|chr20 (606078-606261)
	1-182, gnl\|dasNov1\|scaffold_7519 (17139-17328)
	1-182, gnl\|echTel1\|scaffold_284005 (1194-1383)
	1-182, gnl\|galGal2\|chr3 (74917633-74917450)
	1-182, gnl\|hg17\|chr6 (87922016-87922205)
	1-182, gnl\|Hg17\|chr6 (87922015-87922196)
	1-182, gnl\|loxAfr1\|scaffold_724 (6726-6915)
	1-182, gnl\|mm7\|chr4 (35021613-35021433)
	1-182, gnl\|Mm7\|chr4 (35021612-35021437)
	1-182, gnl\|monDom2\|scaffold_0 (142065153-142064964)
	1-182, gnl\|oryCun1\|scaffold_198549 (71593-71782)
	1-182, gnl\|panTro1\|chr5 (89625340-89625529)
	1-182, gnl\|rn3\|chr5 (51518985-51518805)

	415-588, gnl\|bosTau2\|chr9 (35034949-35034775)
	415-588, gnl\|Hg17\|chr6 (87985031-87985200)
	415-588, gnl\|Mm7\|chr4 (34978148-34977979)