Non-Coding RNA Search

Ss1.1-LyN1-MLN01F110070.5

Sequence:


               
               CTCACAATGGAGCTCTCGGAGTATGTGCAGAAAGGCTTCCAGATGCTGGCAGATCCCGGC
TCCTTCGACTCCAACGCCTTCACGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGAC
GCCCAGGCGGACGAGGCCGTGTTAGGTAAGCCGCTTGGCTCTGCGCTGGATCGGCCTGGG
TGGAGGGGCGCTCGGAGAAGAGGAGCGAGACCGAGCGAGAAGGGGAAAGCCCCGGGAAGA
GGAAGTCTCCGGGCTTCGCCCTTCGCTCCGGACGGAGTGTGGGGATGTGGCTCTGCCAGA
ACCCACGGCGGACCCCGAGCATTGTTCTGTCCCCAGTTGGCACCTGCACACAGCCAACTA
CACGTTCCTGGCCTGATTTCCCTTCGCAGGCTCTTTGTTCCTTTGTAAACCCGTGTTCAA
GTCTTGTTTGTGGCCTAAAATGTCTGAGGTTTTCCGCCAGGTCTGGGGCAAAGGCTGTTT
GACACTTGGACTTCATCGGGGCAGCTTCTCTGCAATTCAAGCTTTAAGTGCTAGGCTGGC
AAAGGTTTTAAAGGTCTGCTTCCAGAGTAATTACCAGGTCAAATAGTGTTGACATTTTCC
AGCTTAGAGACTACCTCAAGTTCTTCTGATCACTCCAACACTAGTTCAATATGTTTTGCA
CAGGTTCCACGTCTAGAACCTTAAACTGTGGTGCATAAGGTTTTGTTCCGCACCAGTTAT
CAAGAGTCTTTTGTAAGTGGTCCGGTCAGTGATTGCGGAGTGCGGTGTCAGTATGGATGG
AGGCATGTTTTAAGACAGATCACTTTTAGATGATTTTCTTAAATATAAATATCTCAATTC
AAATTTTTGTTTTTTTCTTTAGTTTCACGAGCTAAACACGTGTGCAAAAAGTATGAAAGT
GGAAGTCCTTTAGACGAAAATAGTAACCACCACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACAATGGAGCTCTCGGAGTATGTGCAGAAAGGCTTCCAGATGCTGGCAGATCCCGGC
TCCTTCGACTCCAACGCCTTCACGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGAC
GCCCAGGCGGACGAGGCCGTGTTAGGTAAGCCGCTTGGCTCTGCGCTGGATCGGCCTGGG
TGGAGGGGCGCTCGGAGAAGAGGAGCGAGACCGAGCGAGAAGGGGAAAGCCCCGGGAAGA
GGAAGTCTCCGGGCTTCGCCCTTCGCTCCGGACGGAGTGTGGGGATGTGGCTCTGCCAGA
ACCCACGGCGGACCCCGAGCATTGTTCTGTCCCCAGTTGGCACCTGCACACAGCCAACTA
CACGTTCCTGGCCTGATTTCCCTTCGCAGGCTCTTTGTTCCTTTGTAAACCCGTGTTCAA
GTCTTGTTTGTGGCCTAAAATGTCTGAGGTTTTCCGCCAGGTCTGGGGCAAAGGCTGTTT
GACACTTGGACTTCATCGGGGCAGCTTCTCTGCAATTCAAGCTTTAAGTGCTAGGCTGGC
AAAGGTTTTAAAGGTCTGCTTCCAGAGTAATTACCAGGTCAAATAGTGTTGACATTTTCC
AGCTTAGAGACTACCTCAAGTTCTTCTGATCACTCCAACACTAGTTCAATATGTTTTGCA
CAGGTTCCACGTCTAGAACCTTAAACTGTGGTGCATAAGGTTTTGTTCCGCACCAGTTAT
CAAGAGTCTTTTGTAAGTGGTCCGGTCAGTGATTGCGGAGTGCGGTGTCAGTATGGATGG
AGGCATGTTTTAAGACAGATCACTTTTAGATGATTTTCTTAAATATAAATATCTCAATTC
AAATTTTTGTTTTTTTCTTTAGTTTCACGAGCTAAACACGTGTGCAAAAAGTATGAAAGT
GGAAGTCCTTTAGACGAAAATAGTAACCACCACCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58567623|gb|AAW78955.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58567623|gb|AAW78955.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               60-409, - strand, RNAz p=0.956

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               60-409, - strand, RNAz p=0.956

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-936, gnl|bosTau2|chr1 (58489230-58488352)
               

               
               60-936, gnl|Hg17|chr10 (22645406-22646296)
               

               
               60-936, gnl|Mm7|chr2 (18737678-18738544)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-936, gnl|bosTau2|chr1 (58489230-58488352)
               

               
               60-936, gnl|Hg17|chr10 (22645406-22646296)
               

               
               60-936, gnl|Mm7|chr2 (18737678-18738544)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               cje (0.165235)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	60-936, gnl\|bosTau2\|chr1 (58489230-58488352)
	60-936, gnl\|Hg17\|chr10 (22645406-22646296)
	60-936, gnl\|Mm7\|chr2 (18737678-18738544)

	ill (0.175593)
	cje (0.165235)
	ova (0.129132)
	med (0.116252)
	spc (0.113366)