Ss1.1-LyN1-MLN01F110073.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTCAGCAGCCCTGTAGCGCTCGCTTTTCCCGGTGGATGCTGCGCTTCTTGGAGCGGA ACATGAAGGTGCTCTTCGTCGCCGCCGTAGTCGTGGGCTCGGTCCTCTTCCTGCTGTTGC CTGGACCTTCCACGGCAGATGAGAAGAAGAAGGGACCCAAAGTCACTGTCAAGGTTTACT TTGACCTGCGAATTGGAGATGAAGATATAGGCCGGGTGGTCATCGGTCTCTTTGGAAAGA CAGTTCCAAAAACGGTGGATAATTTTGTGGCCTTGGCTACAGGAGAGAAAGGGTTTGGCT ACAAGAACAGCAAATTCCATCGTGTCATCAAGGACTTCATGATCCAGGGTGGAGACTTCA CCCGGGGAGATGGCACTGGAGGTAAGAGCATCTATGGTGAACGCTTTCCCGACGAGAACT TCAAGCTGAAACACTATGGGCCCGGCTGGGTGAGCATGGCCAACGCGGGCAAAGACACCA ATGGCTCCCAGTTCTTCATCACAACGGTCAAGACAGCCTGGTTAGATGGCAAGCATGTGG TGTTCGGCAAAGTTCTCGAGGGCATGGAGGTAGTTCGCAAGGTGGAGAGCACCAAGACAG ATGGTCGGGACAAGCCCCTGAAGGATGTGACAATCGCAGACTGTGGCAAGATCGAGGTGG AGAAGCCCTTTGCCATCGCCAAGGAGTAGGACCCCCGGGCACCTCTTCCCTTTGAGCGAC TGTCTGTGCAGCCCTGTTGCCCTCCTGGAGGTGAAGACAGTGCTGGGCGCCACAGGGCTC CATGCCGCTCTGGCCCGAGTGCCAGCATCCGTCGGAGCGGACCCCTCCCCTCACATTCCA CGGCCGGAGGGCCCGGTTTTGTAACAAACTCCTGTCAACACTGACCAATTAAAAAAAGGT GGTTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTCAGCAGCCCTGTAGCGCTCGCTTTTCCCGGTGGATGCTGCGCTTCTTGGAGCGGA ACATGAAGGTGCTCTTCGTCGCCGCCGTAGTCGTGGGCTCGGTCCTCTTCCTGCTGTTGC CTGGACCTTCCACGGCAGATGAGAAGAAGAAGGGACCCAAAGTCACTGTCAAGGTTTACT TTGACCTGCGAATTGGAGATGAAGATATAGGCCGGGTGGTCATCGGTCTCTTTGGAAAGA CAGTTCCAAAAACGGTGGATAATTTTGTGGCCTTGGCTACAGGAGAGAAAGGGTTTGGCT ACAAGAACAGCAAATTCCATCGTGTCATCAAGGACTTCATGATCCAGGGTGGAGACTTCA CCCGGGGAGATGGCACTGGAGGTAAGAGCATCTATGGTGAACGCTTTCCCGACGAGAACT TCAAGCTGAAACACTATGGGCCCGGCTGGGTGAGCATGGCCAACGCGGGCAAAGACACCA ATGGCTCCCAGTTCTTCATCACAACGGTCAAGACAGCCTGGTTAGATGGCAAGCATGTGG TGTTCGGCAAAGTTCTCGAGGGCATGGAGGTAGTTCGCAAGGTGGAGAGCACCAAGACAG ATGGTCGGGACAAGCCCCTGAAGGATGTGACAATCGCAGACTGTGGCAAGATCGAGGTGG AGAAGCCCTTTGCCATCGCCAAGGAGTAGGACCCCCGGGCACCTCTTCCCTTTGAGCGAC TGTCTGTGCAGCCCTGTTGCCCTCCTGGAGGTGAAGACAGTGCTGGGCGCCACAGGGCTC CATGCCGCTCTGGCCCGAGTGCCAGCATCCGTCGGAGCGGACCCCTCCCCTCACATTCCA CGGCCGGAGGGCCCGGTTTTGTAACAAACTCCTGTCAACACTGACCAATTAAAAAAAGGT GGTTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-175, gnl|bosTau2|chr10 (30154008-30153834) | |
| 1-175, gnl|canFam2|chr30 (31655787-31655935) | |
| 1-175, gnl|danRer3|chr25 (4626117-4625981) | |
| 1-175, gnl|dasNov1|scaffold_15973 (2075-1927) | |
| 1-175, gnl|fr1|chrUn (237282951-237283112) | |
| 1-175, gnl|hg17|chr15 (62242103-62242251) | |
| 1-175, gnl|Hg17|chr15 (62242277-62242102) | |
| 1-175, gnl|loxAfr1|scaffold_4663 (84073-83926) | |
| 1-175, gnl|mm7|chr9 (66090044-66089896) | |
| 1-175, gnl|Mm7|chr9 (66089869-66090043) | |
| 1-175, gnl|monDom2|scaffold_12 (49325732-49325583) | |
| 1-175, gnl|oryCun1|scaffold_192746 (29822-29970) | |
| 1-175, gnl|panTro1|chr16 (62705562-62705706) | |
| 1-175, gnl|rheMac2|chr7 (42556747-42556895) | |
| 1-175, gnl|rn3|chr8 (70362652-70362504) | |
| 1-175, gnl|tetNig1|chr13 (7974789-7974931) | |
| 1-175, gnl|xenTro1|scaffold_295 (342258-342110) | |
| 228-564, gnl|bosTau2|chr1 (66427597-66427262) | |
| 228-564, gnl|Hg17|chr11 (43444587-43444914) | |
| 228-564, gnl|Mm7|chr3 (122025018-122025354) | |
| 566-908, gnl|bosTau2|chr10 (30148453-30148124) | |
| 566-908, gnl|Hg17|chr15 (62235398-62235076) | |
| 566-908, gnl|Mm7|chr9 (66095935-66096259) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-175, gnl|bosTau2|chr10 (30154008-30153834) | |
| 1-175, gnl|canFam2|chr30 (31655787-31655935) | |
| 1-175, gnl|danRer3|chr25 (4626117-4625981) | |
| 1-175, gnl|dasNov1|scaffold_15973 (2075-1927) | |
| 1-175, gnl|fr1|chrUn (237282951-237283112) | |
| 1-175, gnl|hg17|chr15 (62242103-62242251) | |
| 1-175, gnl|Hg17|chr15 (62242277-62242102) | |
| 1-175, gnl|loxAfr1|scaffold_4663 (84073-83926) | |
| 1-175, gnl|mm7|chr9 (66090044-66089896) | |
| 1-175, gnl|Mm7|chr9 (66089869-66090043) | |
| 1-175, gnl|monDom2|scaffold_12 (49325732-49325583) | |
| 1-175, gnl|oryCun1|scaffold_192746 (29822-29970) | |
| 1-175, gnl|panTro1|chr16 (62705562-62705706) | |
| 1-175, gnl|rheMac2|chr7 (42556747-42556895) | |
| 1-175, gnl|rn3|chr8 (70362652-70362504) | |
| 1-175, gnl|tetNig1|chr13 (7974789-7974931) | |
| 1-175, gnl|xenTro1|scaffold_295 (342258-342110) | |
| 228-564, gnl|bosTau2|chr1 (66427597-66427262) | |
| 228-564, gnl|Hg17|chr11 (43444587-43444914) | |
| 228-564, gnl|Mm7|chr3 (122025018-122025354) | |
| 566-908, gnl|bosTau2|chr10 (30148453-30148124) | |
| 566-908, gnl|Hg17|chr15 (62235398-62235076) | |
| 566-908, gnl|Mm7|chr9 (66095935-66096259) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| amn (1.67084) | |
| nca (1.50561) | |
| fce (1.35796) | |
| cov (1.18937) | |
| nlu (1.15009) | |
| nep (0.919625) | |
| col (0.780031) | |
| eru (0.720288) | |
| ill (0.702371) | |
| nje (0.66368) | |
| csp (0.644745) | |
| ese (0.632511) | |
| nco (0.485201) | |
| med (0.465008) | |
| eli (0.455443) | |
| lnt (0.426925) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| cli (0.305623) | |
| cag (0.302389) | |
| eje (0.296501) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| ute (0.265569) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| sug (0.127291) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (1.67084) | |
| nca (1.50561) | |
| fce (1.35796) | |
| cov (1.18937) | |
| nlu (1.15009) | |
| nep (0.919625) | |
| col (0.780031) | |
| eru (0.720288) | |
| ill (0.702371) | |
| nje (0.66368) | |
| csp (0.644745) | |
| ese (0.632511) | |
| nco (0.485201) | |
| med (0.465008) | |
| eli (0.455443) | |
| lnt (0.426925) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| cli (0.305623) | |
| cag (0.302389) | |
| eje (0.296501) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| ute (0.265569) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fli (0.202881) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| cki (0.165235) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| sug (0.127291) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |