Non-Coding RNA Search

Ss1.1-LyN1-MLN01F110077.5

Sequence:


               
               TTGGAGCCGACAGAAAGTAGCTGCTTGGAGCGTTCTCCGCCTGCATCCCAGCCAGTTCCG
CGCGCCGCCGCCCCGCGCCCCGCAGCTCTCCCGGAGGTTGGGGTTTGGTCCTGCATCAGT
CACCTTTTCCTGACCTGGGCAGTCGCTATGGCACAGGTTCTCAGAGGCACTGTGACTGAC
TTCCCTGGATTTGATGAGCGGGCTGATGCAGAAACTCTTCGGAAGGCCATGAAAGGCCTG
GGCACTGACGAGGAGAGCATCCTGACTCTGTTGACCTCCCGCAGTAATGCTCAGCGCCAG
GAGATCGCTGTGGCTTTTAAAACTCTCTTTGGCAGGGACCTTCTGGATGACCTGAAATCA
GAGCTGACTGGAAAATTTGAAAAATTAATCGTGGCTTTGATGAAACCTTCTCGGCTGTAC
GATGCCTATGAACTGAAGCATGCTCTTAAGGGAGCTGGGACAGATGAGAAAATCCTGACA
GAAATTATTGCTTCAAGGACACCTGAAGAATTAAGAGCCATAAAACAAGTTTATGAAGAA
GAATATGGCTCAAGCCTGGAAGATGATGTGGTGGGAGATACATCAGGGTACTACCAGAGG
ATGCTGGTGGTCCTCCTTCAGGCTAATAGAGATCCTGATGGTAGAATTGATGAAGCACAG
GTTGAACAAGATGCTCAGGCATTGTTTCAGGCTGGAGAACTTAAATGGGGAACAGATGAA
GAAAAGTTTATTACTATCTTTGGAACACGAAGTGTGTCACATTTGAGAAGGGTGTTTGAC
AAATACATGACTATATCAGGATTTCAAATTGAAGAAACCATTGACCGGGAGACTTCTGGT
AATTTGGAGCAACTGCTCCTTGCTGTTGTGAAATCTATTCGGAGTATCCCTGCCTACCTT
GCAGAAACTCTCTACTATGCAATGAAGGGAGCTGGGACAGATGATCATACCCTCATCAGA
GTCATGGTTTCCAGGAGTGAGATTGATCTGTTTAACATTAGGAAGGAGTTTAGGAAGAAT
TTTGCCACCTCTCTTTATTCGATGATTAAGGGTGACACATCTGGGGACTATAAGAAGGCC
CTCCTGCTGCTCTGTGGAGGCGAAGATGACTGATGGGGTCCTGGGGAGAGACCCCACGCT
GTGCCCACTGCCGCCACTGCCTTCCTTCAGCACATCTCACTGCACTGCTTGTAGCCAGGG
CTTGGCACATGGCCTTAACCACACTAGCATGCATGCTAGGACCAAAACATGTACGTTGTA
GGAGAAAGTAGTGGTGCTTCTCTCTGATCTCCATTAAGATCTTTCTCTTTGTTGTAGTAC
TGAAGTGTACTTATGTTACTAAGACTAAAATCTGGATCATTTATATTTTCCTTTAAGAGG
TCAGACTGCTTTTAGCCTATTTTAAAAGCTTCATTTATATTAAATTGATAACCATATTAC
CTTAATCGGAACCTGAGCCTCAGAATTGTGAACTCCTGGAAGTGTTACTGATCTAGTTTG
CTACCAAATTAAACCTGGAAAATTATGGTAGTTGCATTCAAAAGATTAGTGGGTAATAAA
CATTTCCTTTCTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAGCCGACAGAAAGTAGCTGCTTGGAGCGTTCTCCGCCTGCATCCCAGCCAGTTCCG
CGCGCCGCCGCCCCGCGCCCCGCAGCTCTCCCGGAGGTTGGGGTTTGGTCCTGCATCAGT
CACCTTTTCCTGACCTGGGCAGTCGCTATGGCACAGGTTCTCAGAGGCACTGTGACTGAC
TTCCCTGGATTTGATGAGCGGGCTGATGCAGAAACTCTTCGGAAGGCCATGAAAGGCCTG
GGCACTGACGAGGAGAGCATCCTGACTCTGTTGACCTCCCGCAGTAATGCTCAGCGCCAG
GAGATCGCTGTGGCTTTTAAAACTCTCTTTGGCAGGGACCTTCTGGATGACCTGAAATCA
GAGCTGACTGGAAAATTTGAAAAATTAATCGTGGCTTTGATGAAACCTTCTCGGCTGTAC
GATGCCTATGAACTGAAGCATGCTCTTAAGGGAGCTGGGACAGATGAGAAAATCCTGACA
GAAATTATTGCTTCAAGGACACCTGAAGAATTAAGAGCCATAAAACAAGTTTATGAAGAA
GAATATGGCTCAAGCCTGGAAGATGATGTGGTGGGAGATACATCAGGGTACTACCAGAGG
ATGCTGGTGGTCCTCCTTCAGGCTAATAGAGATCCTGATGGTAGAATTGATGAAGCACAG
GTTGAACAAGATGCTCAGGCATTGTTTCAGGCTGGAGAACTTAAATGGGGAACAGATGAA
GAAAAGTTTATTACTATCTTTGGAACACGAAGTGTGTCACATTTGAGAAGGGTGTTTGAC
AAATACATGACTATATCAGGATTTCAAATTGAAGAAACCATTGACCGGGAGACTTCTGGT
AATTTGGAGCAACTGCTCCTTGCTGTTGTGAAATCTATTCGGAGTATCCCTGCCTACCTT
GCAGAAACTCTCTACTATGCAATGAAGGGAGCTGGGACAGATGATCATACCCTCATCAGA
GTCATGGTTTCCAGGAGTGAGATTGATCTGTTTAACATTAGGAAGGAGTTTAGGAAGAAT
TTTGCCACCTCTCTTTATTCGATGATTAAGGGTGACACATCTGGGGACTATAAGAAGGCC
CTCCTGCTGCTCTGTGGAGGCGAAGATGACTGATGGGGTCCTGGGGAGAGACCCCACGCT
GTGCCCACTGCCGCCACTGCCTTCCTTCAGCACATCTCACTGCACTGCTTGTAGCCAGGG
CTTGGCACATGGCCTTAACCACACTAGCATGCATGCTAGGACCAAAACATGTACGTTGTA
GGAGAAAGTAGTGGTGCTTCTCTCTGATCTCCATTAAGATCTTTCTCTTTGTTGTAGTAC
TGAAGTGTACTTATGTTACTAAGACTAAAATCTGGATCATTTATATTTTCCTTTAAGAGG
TCAGACTGCTTTTAGCCTATTTTAAAAGCTTCATTTATATTAAATTGATAACCATATTAC
CTTAATCGGAACCTGAGCCTCAGAATTGTGAACTCCTGGAAGTGTTACTGATCTAGTTTG
CTACCAAATTAAACCTGGAAAATTATGGTAGTTGCATTCAAAAGATTAGTGGGTAATAAA
CATTTCCTTTCTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|49659833|gb|AAT68216.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49659833|gb|AAT68216.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               79-1597, gnl|bosTau2|chr6 (762605-761100)
               

               
               79-1597, gnl|Hg17|chr4 (122965134-122946757)
               

               
               79-1597, gnl|Mm7|chr3 (36276177-36259760)
               


               
               286-1103, gnl|bosTau2|chr14 (22850733-22851550)
               

               
               286-1103, gnl|Hg17|chr9 (73003843-73014573)
               

               
               286-1103, gnl|Mm7|chr19 (20084298-20074209)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-1597, gnl|bosTau2|chr6 (762605-761100)
               

               
               79-1597, gnl|Hg17|chr4 (122965134-122946757)
               

               
               79-1597, gnl|Mm7|chr3 (36276177-36259760)
               


               
               286-1103, gnl|bosTau2|chr14 (22850733-22851550)
               

               
               286-1103, gnl|Hg17|chr9 (73003843-73014573)
               

               
               286-1103, gnl|Mm7|chr19 (20084298-20074209)

Expressed library(ies): 58 entry(ies)

More info

Expressed library(ies): 58 entry(ies)

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               nlu (2.10849)
               

               
               cty (1.66528)
               

               
               fat (1.47427)
               

               
               clu (0.957167)
               

               
               jca (0.797721)
               

               
               spl (0.715922)
               

               
               gul (0.710353)
               

               
               rec (0.692281)
               

               
               ski (0.586941)
               

               
               eye (0.511509)
               

               
               ldo (0.485013)
               

               
               eru (0.480192)
               

               
               spc (0.453463)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               nep (0.36785)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               isp (0.300752)
               

               
               nbm (0.297974)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 58 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (2.10849)
               

               
               cty (1.66528)
               

               
               fat (1.47427)
               

               
               clu (0.957167)
               

               
               jca (0.797721)
               

               
               spl (0.715922)
               

               
               gul (0.710353)
               

               
               rec (0.692281)
               

               
               ski (0.586941)
               

               
               eye (0.511509)
               

               
               ldo (0.485013)
               

               
               eru (0.480192)
               

               
               spc (0.453463)
               

               
               pty (0.428143)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               ova (0.387397)
               

               
               nep (0.36785)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               isp (0.300752)
               

               
               nbm (0.297974)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               ssp (0.271039)
               

               
               nmm (0.265604)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	79-1597, gnl\|bosTau2\|chr6 (762605-761100)
	79-1597, gnl\|Hg17\|chr4 (122965134-122946757)
	79-1597, gnl\|Mm7\|chr3 (36276177-36259760)

	286-1103, gnl\|bosTau2\|chr14 (22850733-22851550)
	286-1103, gnl\|Hg17\|chr9 (73003843-73014573)
	286-1103, gnl\|Mm7\|chr19 (20084298-20074209)

	nlu (2.10849)
	cty (1.66528)
	fat (1.47427)
	clu (0.957167)
	jca (0.797721)
	spl (0.715922)
	gul (0.710353)
	rec (0.692281)
	ski (0.586941)
	eye (0.511509)
	ldo (0.485013)
	eru (0.480192)
	spc (0.453463)
	pty (0.428143)
	amn (0.417711)
	nca (0.410621)
	cov (0.396458)
	col (0.390016)
	ova (0.387397)
	nep (0.36785)
	ill (0.351185)
	duo (0.345602)
	mcp (0.341297)
	fhi (0.339155)
	isp (0.300752)
	nbm (0.297974)
	csk (0.281492)
	cga (0.279096)
	ssp (0.271039)
	nmm (0.265604)
	tra (0.246184)
	eep (0.245128)
	cly (0.241284)
	pgl (0.236967)
	mgp (0.230681)
	jej (0.197844)
	fcc (0.197785)
	cmu (0.186393)
	sag (0.182715)
	cut (0.169924)
	nje (0.16592)
	csp (0.161186)
	tbr (0.154178)
	cag (0.151194)
	lun (0.150489)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	ebs (0.118301)
	cbl (0.114797)