Ss1.1-LyN1-MLN01F110101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGTCATCTCAAAGAATTTTTGAATATTTGACTATCTTACAATGCTGTCCTACTTCAGA TGGTGCTGCAGCGGCAGTTTTGGCTAGTGAAGTGTTTGTTCAGAAAAATGGCCTGAAATC CAAAGCTGTGGAAATTGTGGCTCAAGAGATGATAACTGACTTGCCAAGCTCATTTGAAGA AAACAGCATGATTAAAGTGGTTGGCTTTGATATGAGTAAAGAAGCTGCCAGAAAATGCTA TGAGAAGTCTGGCCTGAGACCAAGTGATATTGATGTAATAGAACTTCACGATTGCTTTTC TTCCAATGAACTTTTTACTTATGAAGCACTGGGACTCTGTCCAGAAGGTCAAGGTGGAAA ACTGGTTGATGATGGAGATAATACTTATGGAGGAAAGTGGGTCATAAATCCCAGTGGTGG ACTGATCGCAAAGGGACACCCACTTGGAGCTACAGGTCTGGCTCAGTGCGCCGAACTCTG CTGGCAGCTGAGAGGGGAAGCCGGGAAGAGGCAAGTTCCTGGTGCAAAGGTTGCTCTGCA GCATAATTTGGGCCTTGGAGGAGCTGCGGTTGTCACGCTGTACAGGATGGGTTTTCCTGA AGCTGCCAGATCTCCCCAAGTTGAGGCTGTTCCAACCAGCTCTACACTTGACGGATTTAA GGCAAATCTTGTCTTTAAGGAGATTGAGAAGAGGCTTGAAGAGGAAGGGGAGCAGTTTGT AAAGAAGATTGGTGGTATTTTCGCCTTCAAGGTGAAGGATGGCCCCGAGGGCAGAGAAGC CACCTGGGTGGTGGACGTGAAGAATGGCAAAGGAGCCGTGCTCCCTAACTCAGATAAGAA AGCCGACTGCACAATCACGATGTCCGACTCAGACTTAGTGGCTTTGATGATGGGTAAAAT GAATCCTCAGTTGGCCTTCTTTCAAGGCAAATTGAAAGTCCTTGGCAACATGGGTCTGGC TATGAAGTTACAGAATCTTCAGCTTCAGCCCAGCAAAGCTAAGCTGTGAAGAACTCCCTT TGCCTACCTTTGAAAATCAAGATGAGATATACAAATATATAGATGCGTATATTTCACTGT CAGAACCTAGACTGAAAATTCACATTGGCAAATAGCATGAGATTAGTTTTTAAATGGGTG TGACCAATCCTGTTTTTCCTACGGGCTGGGTAAATAGAACCTGATGGTATACTACTGCTT TGCAAAATTGCCTACAAATGTGCATTACAAAGTTAATGTGGTAATTATGGTTTAGGGTAC AATTGAGTTTTAGAATAAAATTAGGAACAGCAAAATCCAAAAACTATGTAAACAACAGTT CTCATTTTGCTTATAAAGTATGTTTGAGGATTATTCTGCTGAAGAGTCAATTTAAGTTTT CCTTGGGAGGCCGAGGGAAGAGAACGAACACCAGTAGTGGAACAGTAATTAATATTGTGC ACTAATGACCTTCATCTATTTTCACTGAGAATTTTTAAAATTCTGTACTGGAATGTTTAA AAAAAAAAACTTTAAAAATTTGCATTTCATGCCATCTAAACAATATTTTCTTCCCAAGTT GAAGACATAGGATCAGAGCTAGGGACATAAAAAAAATCTGTAGCTGCACACAGGCCTATT TTTAAAATAAACATTTTTTAAAATGGGTTTCCTTCTTGAAAAAAAAAAATCAATGTATTG GGATCATAAAACACTGTTGTGAAAAATAATTGAACAAATAAAATTTGCTTTGAGATGCAC AGTTTTCAGATGATAATCTCACATTAATTAAATTTGTAAAGCTCTCCTACCTTTGTTATA ATTTTCCTTTTTAACTATCCACGTTTATCTTCCTAGTTTTTCTAATGCTAATGCTATTTC TAATAATTCAGTAAGAATGGGGTAAAATAATGTTTGGGGACGAATATTTAATAGAAAATT AAAATAACTTTTCCTCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGTCATCTCAAAGAATTTTTGAATATTTGACTATCTTACAATGCTGTCCTACTTCAGA TGGTGCTGCAGCGGCAGTTTTGGCTAGTGAAGTGTTTGTTCAGAAAAATGGCCTGAAATC CAAAGCTGTGGAAATTGTGGCTCAAGAGATGATAACTGACTTGCCAAGCTCATTTGAAGA AAACAGCATGATTAAAGTGGTTGGCTTTGATATGAGTAAAGAAGCTGCCAGAAAATGCTA TGAGAAGTCTGGCCTGAGACCAAGTGATATTGATGTAATAGAACTTCACGATTGCTTTTC TTCCAATGAACTTTTTACTTATGAAGCACTGGGACTCTGTCCAGAAGGTCAAGGTGGAAA ACTGGTTGATGATGGAGATAATACTTATGGAGGAAAGTGGGTCATAAATCCCAGTGGTGG ACTGATCGCAAAGGGACACCCACTTGGAGCTACAGGTCTGGCTCAGTGCGCCGAACTCTG CTGGCAGCTGAGAGGGGAAGCCGGGAAGAGGCAAGTTCCTGGTGCAAAGGTTGCTCTGCA GCATAATTTGGGCCTTGGAGGAGCTGCGGTTGTCACGCTGTACAGGATGGGTTTTCCTGA AGCTGCCAGATCTCCCCAAGTTGAGGCTGTTCCAACCAGCTCTACACTTGACGGATTTAA GGCAAATCTTGTCTTTAAGGAGATTGAGAAGAGGCTTGAAGAGGAAGGGGAGCAGTTTGT AAAGAAGATTGGTGGTATTTTCGCCTTCAAGGTGAAGGATGGCCCCGAGGGCAGAGAAGC CACCTGGGTGGTGGACGTGAAGAATGGCAAAGGAGCCGTGCTCCCTAACTCAGATAAGAA AGCCGACTGCACAATCACGATGTCCGACTCAGACTTAGTGGCTTTGATGATGGGTAAAAT GAATCCTCAGTTGGCCTTCTTTCAAGGCAAATTGAAAGTCCTTGGCAACATGGGTCTGGC TATGAAGTTACAGAATCTTCAGCTTCAGCCCAGCAAAGCTAAGCTGTGAAGAACTCCCTT TGCCTACCTTTGAAAATCAAGATGAGATATACAAATATATAGATGCGTATATTTCACTGT CAGAACCTAGACTGAAAATTCACATTGGCAAATAGCATGAGATTAGTTTTTAAATGGGTG TGACCAATCCTGTTTTTCCTACGGGCTGGGTAAATAGAACCTGATGGTATACTACTGCTT TGCAAAATTGCCTACAAATGTGCATTACAAAGTTAATGTGGTAATTATGGTTTAGGGTAC AATTGAGTTTTAGAATAAAATTAGGAACAGCAAAATCCAAAAACTATGTAAACAACAGTT CTCATTTTGCTTATAAAGTATGTTTGAGGATTATTCTGCTGAAGAGTCAATTTAAGTTTT CCTTGGGAGGCCGAGGGAAGAGAACGAACACCAGTAGTGGAACAGTAATTAATATTGTGC ACTAATGACCTTCATCTATTTTCACTGAGAATTTTTAAAATTCTGTACTGGAATGTTTAA AAAAAAAAACTTTAAAAATTTGCATTTCATGCCATCTAAACAATATTTTCTTCCCAAGTT GAAGACATAGGATCAGAGCTAGGGACATAAAAAAAATCTGTAGCTGCACACAGGCCTATT TTTAAAATAAACATTTTTTAAAATGGGTTTCCTTCTTGAAAAAAAAAAATCAATGTATTG GGATCATAAAACACTGTTGTGAAAAATAATTGAACAAATAAAATTTGCTTTGAGATGCAC AGTTTTCAGATGATAATCTCACATTAATTAAATTTGTAAAGCTCTCCTACCTTTGTTATA ATTTTCCTTTTTAACTATCCACGTTTATCTTCCTAGTTTTTCTAATGCTAATGCTATTTC TAATAATTCAGTAAGAATGGGGTAAAATAATGTTTGGGGACGAATATTTAATAGAAAATT AAAATAACTTTTCCTCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 506-609, gnl|bosTau2|chr12 (48576766-48576663) | |
| 506-609, gnl|canFam2|chr5 (58890722-58890791) | |
| 506-609, gnl|danRer3|chr11 (32275691-32275629) | |
| 506-609, gnl|dasNov1|scaffold_159936 (3745-3641) | |
| 506-609, gnl|echTel1|scaffold_290532 (14304-14242) | |
| 506-609, gnl|hg17|chr5 (70807748-70807817) | |
| 506-609, gnl|Hg17|chr5 (70807850-70807747) | |
| 506-609, gnl|loxAfr1|scaffold_17676 (68352-68421) | |
| 506-609, gnl|mm7|chr9 (123013329-123013398) | |
| 506-609, gnl|oryCun1|scaffold_177332 (5789-5850) | |
| 506-609, gnl|panTro1|chr4 (44650308-44650239) | |
| 506-609, gnl|rheMac2|chr6 (67633299-67633368) | |
| 506-609, gnl|rn3|chr5 (16903017-16902949) | |
| 506-609, gnl|tetNig1|chr15 (3518125-3518056) | |
| 702-1585, gnl|bosTau2|chr12 (48576664-48575788) | |
| 702-1585, gnl|Hg17|chr1 (53225533-53228990) | |
| 702-1585, gnl|Mm7|chr4 (107424117-107420602) | |
| 1636-1918, gnl|bosTau2|chr12 (48575776-48575478) | |
| 1636-1918, gnl|canFam2|chr5 (58862288-58861510) | |
| 1636-1918, gnl|dasNov1|scaffold_244368 (1228-479) | |
| 1636-1918, gnl|echTel1|scaffold_283214 (46903-47683) | |
| 1636-1918, gnl|hg17|chr1 (53228536-53229267) | |
| 1636-1918, gnl|Hg17|chr1 (53229000-53229283) | |
| 1636-1918, gnl|loxAfr1|scaffold_17676 (36021-35230) | |
| 1636-1918, gnl|mm7|chr4 (107421057-107420314) | |
| 1636-1918, gnl|Mm7|chr4 (107420565-107420292) | |
| 1636-1918, gnl|monDom2|scaffold_70 (611602-610960) | |
| 1636-1918, gnl|oryCun1|scaffold_202482 (17614-18368) | |
| 1636-1918, gnl|panTro1|chr1 (51470308-51471040) | |
| 1636-1918, gnl|rheMac2|chr1 (55930917-55931654) | |
| 1636-1918, gnl|rn3|chr5 (129158839-129158095) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 506-609, gnl|bosTau2|chr12 (48576766-48576663) | |
| 506-609, gnl|canFam2|chr5 (58890722-58890791) | |
| 506-609, gnl|danRer3|chr11 (32275691-32275629) | |
| 506-609, gnl|dasNov1|scaffold_159936 (3745-3641) | |
| 506-609, gnl|echTel1|scaffold_290532 (14304-14242) | |
| 506-609, gnl|hg17|chr5 (70807748-70807817) | |
| 506-609, gnl|Hg17|chr5 (70807850-70807747) | |
| 506-609, gnl|loxAfr1|scaffold_17676 (68352-68421) | |
| 506-609, gnl|mm7|chr9 (123013329-123013398) | |
| 506-609, gnl|oryCun1|scaffold_177332 (5789-5850) | |
| 506-609, gnl|panTro1|chr4 (44650308-44650239) | |
| 506-609, gnl|rheMac2|chr6 (67633299-67633368) | |
| 506-609, gnl|rn3|chr5 (16903017-16902949) | |
| 506-609, gnl|tetNig1|chr15 (3518125-3518056) | |
| 702-1585, gnl|bosTau2|chr12 (48576664-48575788) | |
| 702-1585, gnl|Hg17|chr1 (53225533-53228990) | |
| 702-1585, gnl|Mm7|chr4 (107424117-107420602) | |
| 1636-1918, gnl|bosTau2|chr12 (48575776-48575478) | |
| 1636-1918, gnl|canFam2|chr5 (58862288-58861510) | |
| 1636-1918, gnl|dasNov1|scaffold_244368 (1228-479) | |
| 1636-1918, gnl|echTel1|scaffold_283214 (46903-47683) | |
| 1636-1918, gnl|hg17|chr1 (53228536-53229267) | |
| 1636-1918, gnl|Hg17|chr1 (53229000-53229283) | |
| 1636-1918, gnl|loxAfr1|scaffold_17676 (36021-35230) | |
| 1636-1918, gnl|mm7|chr4 (107421057-107420314) | |
| 1636-1918, gnl|Mm7|chr4 (107420565-107420292) | |
| 1636-1918, gnl|monDom2|scaffold_70 (611602-610960) | |
| 1636-1918, gnl|oryCun1|scaffold_202482 (17614-18368) | |
| 1636-1918, gnl|panTro1|chr1 (51470308-51471040) | |
| 1636-1918, gnl|rheMac2|chr1 (55930917-55931654) | |
| 1636-1918, gnl|rn3|chr5 (129158839-129158095) |
| Expressed library(ies): 61 entry(ies) | More info |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
| kid (3.37312) | |
| mgp (1.84544) | |
| ret (1.1586) | |
| spl (1.14548) | |
| cty (1.0408) | |
| vin (0.997672) | |
| fco (0.943248) | |
| lyg (0.931718) | |
| mgm (0.901713) | |
| sug (0.891039) | |
| ski (0.733676) | |
| fty (0.703359) | |
| fhi (0.678311) | |
| bfe (0.599431) | |
| liv (0.585137) | |
| sin (0.524843) | |
| pro (0.512033) | |
| thg (0.507164) | |
| nje (0.49776) | |
| tra (0.492368) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| tbr (0.462535) | |
| lun (0.451467) | |
| ssp (0.406559) | |
| jej (0.395687) | |
| elu (0.385356) | |
| bla (0.373042) | |
| sag (0.36543) | |
| eye (0.341006) | |
| mga (0.32041) | |
| isp (0.300752) | |
| eje (0.296501) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| eep (0.245128) | |
| clu (0.239292) | |
| spc (0.226732) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cki (0.165235) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (3.37312) | |
| mgp (1.84544) | |
| ret (1.1586) | |
| spl (1.14548) | |
| cty (1.0408) | |
| vin (0.997672) | |
| fco (0.943248) | |
| lyg (0.931718) | |
| mgm (0.901713) | |
| sug (0.891039) | |
| ski (0.733676) | |
| fty (0.703359) | |
| fhi (0.678311) | |
| bfe (0.599431) | |
| liv (0.585137) | |
| sin (0.524843) | |
| pro (0.512033) | |
| thg (0.507164) | |
| nje (0.49776) | |
| tra (0.492368) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| tbr (0.462535) | |
| lun (0.451467) | |
| ssp (0.406559) | |
| jej (0.395687) | |
| elu (0.385356) | |
| bla (0.373042) | |
| sag (0.36543) | |
| eye (0.341006) | |
| mga (0.32041) | |
| isp (0.300752) | |
| eje (0.296501) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| eep (0.245128) | |
| clu (0.239292) | |
| spc (0.226732) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fli (0.202881) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cki (0.165235) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) |