Ss1.1-LyN1-MLN01F120059.5.5
|
GAGCTTTCGAGGAAGATCCCCTTAACTCGAATTCATCCGCCTGATCATTTCCCTACCTTT
TCCTAAAGGAGGAGCAGAACAACCTGGAAGAGAGGAGAGCTGAATTTTTTAGGATCCTTT
CTTCCGGTTTGAGGAATTCAGGGCTCCGCTGAGGGGCCTCGCTGCGTCGCGGAGGTGAGG
CCGAGGGAACTACTTTCAGCAGCGCACGGATACGGCGCCTACGCAAGCGTGATGAGTGAC
GCAACAGACGTTGCATAAATTTCGGCCCCGCCGAGCCGCAGCGTTCAGAAGCGACTGGCA
TTGTTGGCGGTTTCGCTGTTGCGGTCGAGGTGATTCGGTGTGATTGGCTTCACAGCGTCT
GTGCCTTCACTCACAGGTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCAT
CACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAA
GGAGGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGG
CCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTCCATCTGGTTCTGCGTCT
GAGGGGTGGTATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGT
GGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCC
CCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTC
TGATTACAACATCCAGAAAGAGTCCACTCTCCATCTGGTTCTGCGTCTGAGGGGTGGTAT
GCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGA
CACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCA
GAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACAT
CCAGAAAGAGTCCACTCTCCATCTGGTCCTCCGTCTGAGGGGTGGCTGCTAATTCTCCAG
TCTTGCATTCATAATGCCCACTGATGGCATTACTCTGCACTCTAGCCATTTGCCCCAATT
TAAGTTTAGAAATTACCAGTTTCAGTAATAGCTGAACCTGTCCAAAATGTTAATAAAGGT
TTTGTTGCATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGCTTTCGAGGAAGATCCCCTTAACTCGAATTCATCCGCCTGATCATTTCCCTACCTTT
TCCTAAAGGAGGAGCAGAACAACCTGGAAGAGAGGAGAGCTGAATTTTTTAGGATCCTTT
CTTCCGGTTTGAGGAATTCAGGGCTCCGCTGAGGGGCCTCGCTGCGTCGCGGAGGTGAGG
CCGAGGGAACTACTTTCAGCAGCGCACGGATACGGCGCCTACGCAAGCGTGATGAGTGAC
GCAACAGACGTTGCATAAATTTCGGCCCCGCCGAGCCGCAGCGTTCAGAAGCGACTGGCA
TTGTTGGCGGTTTCGCTGTTGCGGTCGAGGTGATTCGGTGTGATTGGCTTCACAGCGTCT
GTGCCTTCACTCACAGGTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCAT
CACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAA
GGAGGGCATTCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGG
CCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTCCATCTGGTTCTGCGTCT
GAGGGGTGGTATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGT
GGAGCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCC
CCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTC
TGATTACAACATCCAGAAAGAGTCCACTCTCCATCTGGTTCTGCGTCTGAGGGGTGGTAT
GCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGA
CACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCA
GAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACAT
CCAGAAAGAGTCCACTCTCCATCTGGTCCTCCGTCTGAGGGGTGGCTGCTAATTCTCCAG
TCTTGCATTCATAATGCCCACTGATGGCATTACTCTGCACTCTAGCCATTTGCCCCAATT
TAAGTTTAGAAATTACCAGTTTCAGTAATAGCTGAACCTGTCCAAAATGTTAATAAAGGT
TTTGTTGCATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|57114099|ref|NP_001009117.1| |
Protein identifier
|
gi|57114099|ref|NP_001009117.1| |
|
418-1049, + strand, RNAz p=0.992586 |
|
450-609, - strand, RNAz p=0.892399 |
|
611-783, - strand, RNAz p=0.98678 |
|
690-809, - strand, RNAz p=0.791563 |
|
839-1011, - strand, RNAz p=0.98224 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
418-1049, + strand, RNAz p=0.992586 |
|
450-609, - strand, RNAz p=0.892399 |
|
611-783, - strand, RNAz p=0.98678 |
|
690-809, - strand, RNAz p=0.791563 |
|
839-1011, - strand, RNAz p=0.98224 |
|
370-1078, gnl|bosTau2|chr17 (26091148-26090439) |
|
370-1078, gnl|Hg17|chr12 (123921841-123921133) |
| |
|
379-555, gnl|bosTau2|chr11 (21613174-21613350) |
|
379-555, gnl|Hg17|chr1 (189416966-189417142) |
|
379-555, gnl|Mm7|chr9 (83507902-83508066) |
| |
|
611-783, gnl|bosTau2|chr11 (21613178-21613350) |
|
611-783, gnl|Hg17|chr1 (189416970-189417142) |
|
611-783, gnl|Mm7|chr9 (83507906-83508066) |
| |
|
839-1011, gnl|bosTau2|chr11 (21613178-21613350) |
|
839-1011, gnl|Hg17|chr1 (189416970-189417142) |
|
839-1011, gnl|Mm7|chr9 (83507906-83508066) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
370-1078, gnl|bosTau2|chr17 (26091148-26090439) |
|
370-1078, gnl|Hg17|chr12 (123921841-123921133) |
| |
|
379-555, gnl|bosTau2|chr11 (21613174-21613350) |
|
379-555, gnl|Hg17|chr1 (189416966-189417142) |
|
379-555, gnl|Mm7|chr9 (83507902-83508066) |
| |
|
611-783, gnl|bosTau2|chr11 (21613178-21613350) |
|
611-783, gnl|Hg17|chr1 (189416970-189417142) |
|
611-783, gnl|Mm7|chr9 (83507906-83508066) |
| |
|
839-1011, gnl|bosTau2|chr11 (21613178-21613350) |
|
839-1011, gnl|Hg17|chr1 (189416970-189417142) |
|
839-1011, gnl|Mm7|chr9 (83507906-83508066) |
|
cbr (6.2708) |
|
fhi (4.40902) |
|
cly (4.10182) |
|
cag (4.08225) |
|
nje (3.81616) |
|
fbs (3.68227) |
|
eje (3.55802) |
|
eep (3.55436) |
|
med (3.37131) |
|
cov (3.30382) |
|
fce (3.2591) |
|
csp (3.06254) |
|
hyp (2.99957) |
|
jca (2.96296) |
|
nlu (2.87522) |
|
ebs (2.83923) |
|
ill (2.80948) |
|
ton (2.808) |
|
nco (2.74947) |
|
hlv (2.64587) |
|
lnt (2.56155) |
|
pty (2.42615) |
|
fcc (2.37342) |
|
eye (2.21654) |
|
ecc (2.18567) |
|
jej (2.17628) |
|
cli (2.13936) |
|
nep (2.02317) |
|
nmm (1.99203) |
|
ute (1.99177) |
|
nms (1.92472) |
|
mas (1.89274) |
|
ece (1.83444) |
|
cki (1.81758) |
|
ese (1.77103) |
|
fty (1.7584) |
|
amn (1.67084) |
|
nbm (1.58919) |
|
duo (1.55521) |
|
fli (1.42017) |
|
bla (1.24347) |
|
sin (1.22463) |
|
eru (1.20048) |
|
col (1.17005) |
|
elu (1.15607) |
|
pro (1.02407) |
|
nca (0.958117) |
|
sme (0.91631) |
|
tes (0.831255) |
|
cje (0.826173) |
|
fat (0.737137) |
|
rec (0.692281) |
|
che (0.68157) |
|
cut (0.679694) |
|
ldo (0.679018) |
|
ssp (0.677599) |
|
thg (0.633955) |
|
tbr (0.616713) |
|
pgl (0.592417) |
|
cst (0.560146) |
|
cga (0.558191) |
|
eli (0.455443) |
|
lun (0.451467) |
|
cty (0.41632) |
|
hea (0.408998) |
|
ste (0.405625) |
|
lyg (0.399308) |
|
clu (0.358938) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
ski (0.29347) |
|
cte (0.29274) |
|
lin (0.291206) |
|
ova (0.258264) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
mga (0.160205) |
|
fco (0.157208) |
|
liv (0.146284) |
|
spl (0.143184) |
|
csk (0.140746) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
spc (0.113366) |
|
cbr (6.2708) |
|
fhi (4.40902) |
|
cly (4.10182) |
|
cag (4.08225) |
|
nje (3.81616) |
|
fbs (3.68227) |
|
eje (3.55802) |
|
eep (3.55436) |
|
med (3.37131) |
|
cov (3.30382) |
|
fce (3.2591) |
|
csp (3.06254) |
|
hyp (2.99957) |
|
jca (2.96296) |
|
nlu (2.87522) |
|
ebs (2.83923) |
|
ill (2.80948) |
|
ton (2.808) |
|
nco (2.74947) |
|
hlv (2.64587) |
|
lnt (2.56155) |
|
pty (2.42615) |
|
fcc (2.37342) |
|
eye (2.21654) |
|
ecc (2.18567) |
|
jej (2.17628) |
|
cli (2.13936) |
|
nep (2.02317) |
|
nmm (1.99203) |
|
ute (1.99177) |
|
nms (1.92472) |
|
mas (1.89274) |
|
ece (1.83444) |
|
cki (1.81758) |
|
ese (1.77103) |
|
fty (1.7584) |
|
amn (1.67084) |
|
nbm (1.58919) |
|
duo (1.55521) |
|
fli (1.42017) |
|
bla (1.24347) |
|
sin (1.22463) |
|
eru (1.20048) |
|
col (1.17005) |
|
elu (1.15607) |
|
pro (1.02407) |
|
nca (0.958117) |
|
sme (0.91631) |
|
tes (0.831255) |
|
cje (0.826173) |
|
fat (0.737137) |
|
rec (0.692281) |
|
che (0.68157) |
|
cut (0.679694) |
|
ldo (0.679018) |
|
ssp (0.677599) |
|
thg (0.633955) |
|
tbr (0.616713) |
|
pgl (0.592417) |
|
cst (0.560146) |
|
cga (0.558191) |
|
eli (0.455443) |
|
lun (0.451467) |
|
cty (0.41632) |
|
hea (0.408998) |
|
ste (0.405625) |
|
lyg (0.399308) |
|
clu (0.358938) |
|
vin (0.332557) |
|
bfe (0.299715) |
|
ski (0.29347) |
|
cte (0.29274) |
|
lin (0.291206) |
|
ova (0.258264) |
|
sug (0.254582) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
mga (0.160205) |
|
fco (0.157208) |
|
liv (0.146284) |
|
spl (0.143184) |
|
csk (0.140746) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
spc (0.113366) |
