Non-Coding RNA Search

Ss1.1-LyN1-MLN01F120086.5

Sequence:


               
               ATAGGGATTTTTATACATTAATATGGCATGGATTTCTGATATCTATACATTCTTTCCCAT
TTTAGGAAAAGACAAATTGTGTAATAATTTAAAGTTTATTGACAGTGTTTTATGGTCATG
TCTTCAAGTTCCTTCAGTATACACCAGTTACATTTCTGCAACTCCCTGAGATGCCAATTT
TGAGCACCTAGAACTCAGGTATTCTTACATCCCCATGTAACTTGGGATGCAGATCCCTTT
GCAACTTTGCCCATGTTTTATGATCATTTTCTGTACTCAAAAGAAAACCTGAATTGTAAT
AACGGACTGCAGCTGAATCACATGTTATTGAAAATTAGATTACTGAATCGAAACAATTTC
TCTGTCATATTATTATAACTTAAACTTCAGAGAGTTCCCATTGTGGCTCAGTGGTAATAA
TCCTGACTAGGAGTATTCATGAGGATGCAGGTTTGATCCGTCCTCATCTGTGGGTTGAGG
ATCCGGCGTTGCCATGAGCTGTGGTGTAGGTTGCACATTCGGCTCTTATCTGGCGTGGCT
GTGACTGTGGCATAGGCCAGTGGCTACAGCTCCTGTGCAACCTCTAGTCTGGGAACCTCT
GCATGTGGCAGGTGGGGCACTAAAAATACAAAATAAATAAATAAAAGCAGGATTATCATA
TGATTCATCAGTTGTTTTCTGGGTATATATATTATACCCAAAAGAATTGAGAATAAGAAT
TGAAGAGATACTTAGAACCCCACATGACTGTGGTATTACAATCACCAAGATGTGGAAGCA
AGTCAAGTGCCTACCTACTAATGAAAGGGTAAAGTAAATGTAGCAAATAAACTTCAAGAT
ATTATGGCACTCAAGAGTTGTTGCTGTTTTCACTTACTTGCTGGCAGTTTTCTTGTAATT
TGCCTCTAATGTAGAATGTTGACAATTATATGAGACAGTAGTTGCTGTTGTGGAGTGGGG
AGATTGAGTGTCCTTGAAATGCCAAGGTGCAGGTTCAGTCCACGGCCCACGCAGTGGGTT
TTTGGATCCTGCATTGCCAAACTGTGGCATAAGTTGCAACTGTGTCTTAGATCTGATCCC
TGGCCTGGAAAATCTGTGTGCCTCAGCAGCCAAAAAAAATACCTTGGGGAGTTCCGGTCG
TGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGGATTTTTATACATTAATATGGCATGGATTTCTGATATCTATACATTCTTTCCCAT
TTTAGGAAAAGACAAATTGTGTAATAATTTAAAGTTTATTGACAGTGTTTTATGGTCATG
TCTTCAAGTTCCTTCAGTATACACCAGTTACATTTCTGCAACTCCCTGAGATGCCAATTT
TGAGCACCTAGAACTCAGGTATTCTTACATCCCCATGTAACTTGGGATGCAGATCCCTTT
GCAACTTTGCCCATGTTTTATGATCATTTTCTGTACTCAAAAGAAAACCTGAATTGTAAT
AACGGACTGCAGCTGAATCACATGTTATTGAAAATTAGATTACTGAATCGAAACAATTTC
TCTGTCATATTATTATAACTTAAACTTCAGAGAGTTCCCATTGTGGCTCAGTGGTAATAA
TCCTGACTAGGAGTATTCATGAGGATGCAGGTTTGATCCGTCCTCATCTGTGGGTTGAGG
ATCCGGCGTTGCCATGAGCTGTGGTGTAGGTTGCACATTCGGCTCTTATCTGGCGTGGCT
GTGACTGTGGCATAGGCCAGTGGCTACAGCTCCTGTGCAACCTCTAGTCTGGGAACCTCT
GCATGTGGCAGGTGGGGCACTAAAAATACAAAATAAATAAATAAAAGCAGGATTATCATA
TGATTCATCAGTTGTTTTCTGGGTATATATATTATACCCAAAAGAATTGAGAATAAGAAT
TGAAGAGATACTTAGAACCCCACATGACTGTGGTATTACAATCACCAAGATGTGGAAGCA
AGTCAAGTGCCTACCTACTAATGAAAGGGTAAAGTAAATGTAGCAAATAAACTTCAAGAT
ATTATGGCACTCAAGAGTTGTTGCTGTTTTCACTTACTTGCTGGCAGTTTTCTTGTAATT
TGCCTCTAATGTAGAATGTTGACAATTATATGAGACAGTAGTTGCTGTTGTGGAGTGGGG
AGATTGAGTGTCCTTGAAATGCCAAGGTGCAGGTTCAGTCCACGGCCCACGCAGTGGGTT
TTTGGATCCTGCATTGCCAAACTGTGGCATAAGTTGCAACTGTGTCTTAGATCTGATCCC
TGGCCTGGAAAATCTGTGTGCCTCAGCAGCCAAAAAAAATACCTTGGGGAGTTCCGGTCG
TGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGGGTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               6-384, gnl|bosTau2|chr13 (46378838-46379204)
               

               
               6-384, gnl|Hg17|chr20 (33761818-33761449)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-384, gnl|bosTau2|chr13 (46378838-46379204)
               

               
               6-384, gnl|Hg17|chr20 (33761818-33761449)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cut (0.169924)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	6-384, gnl\|bosTau2\|chr13 (46378838-46379204)
	6-384, gnl\|Hg17\|chr20 (33761818-33761449)

	cut (0.169924)
	ste (0.135208)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)