Non-Coding RNA Search

Ss1.1-LyN1-MLN01G010042.5

Sequence:


               
               ACACAAATTATAATACAAAGCACCCTTTTATATAGACTCATCATTACCATCTAGGGAATG
TGAATGTCTCAAATGTGAAAGAATGTTCAACTAAAAATGAGTATTTATATTCTGGTCAAA
GTCTTGACTGAAATTAAATCTGCTGCCTATCTCTCTGTCTCAGAATAATGCTCATATGCA
ATCAGGAAAAGCATAAGAAGCTGAAGGAACTCAAGGCATAATTTAGGCACAAAACTGAGC
TAGAGAGAACACTATAATCTTGAAATAGATGGTATTTCCACACTCCCCAAATTAACTGAT
TAGTTGATCAGCTATCTGTCCAGATACAGATATAATGTGTGTATATTATAGCTAGCTATA
GATGGGGAAATATGTAAGGAAGAGTAATAGCTAACACTCACAAAGTACTAATATGCTGGA
CACTATCTATGCATCTTGCACATATTAACTCACTTAATCCCCATGATAAATATATTAGGG
AAATATATTATCCACATTTTCATAGATGAGGAAACTGAGGTGTAATAAAATACACTGCTC
AAGATTATAGAGGTAGTAAGTGATGACTTGAACCCAGACAGTCTGGCTCTAGACTTCATA
CTCTTTACCACCATGCCAAACTGCTTCTGTCCTCAGAGAAGGTACAACATAATGGGAAGC
TTAAATATTCATATATGACAAGTAAAATGATAACTCAGTTTCACAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAAATTATAATACAAAGCACCCTTTTATATAGACTCATCATTACCATCTAGGGAATG
TGAATGTCTCAAATGTGAAAGAATGTTCAACTAAAAATGAGTATTTATATTCTGGTCAAA
GTCTTGACTGAAATTAAATCTGCTGCCTATCTCTCTGTCTCAGAATAATGCTCATATGCA
ATCAGGAAAAGCATAAGAAGCTGAAGGAACTCAAGGCATAATTTAGGCACAAAACTGAGC
TAGAGAGAACACTATAATCTTGAAATAGATGGTATTTCCACACTCCCCAAATTAACTGAT
TAGTTGATCAGCTATCTGTCCAGATACAGATATAATGTGTGTATATTATAGCTAGCTATA
GATGGGGAAATATGTAAGGAAGAGTAATAGCTAACACTCACAAAGTACTAATATGCTGGA
CACTATCTATGCATCTTGCACATATTAACTCACTTAATCCCCATGATAAATATATTAGGG
AAATATATTATCCACATTTTCATAGATGAGGAAACTGAGGTGTAATAAAATACACTGCTC
AAGATTATAGAGGTAGTAAGTGATGACTTGAACCCAGACAGTCTGGCTCTAGACTTCATA
CTCTTTACCACCATGCCAAACTGCTTCTGTCCTCAGAGAAGGTACAACATAATGGGAAGC
TTAAATATTCATATATGACAAGTAAAATGATAACTCAGTTTCACAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.510669

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.510669

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-333, gnl|bosTau2|chr6 (2682030-2682367)
               

               
               1-333, gnl|Hg17|chr4 (120233151-120233440)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-333, gnl|bosTau2|chr6 (2682030-2682367)
               

               
               1-333, gnl|Hg17|chr4 (120233151-120233440)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-333, gnl\|bosTau2\|chr6 (2682030-2682367)
	1-333, gnl\|Hg17\|chr4 (120233151-120233440)