Non-Coding RNA Search

Ss1.1-LyN1-MLN01G010095.5

Sequence:


               
               AAGATCAAGGACCTGAAGACCTCGAACAACCGGCTCCTCAACAAGCGGAGGAAGAAGCAG
GCAGGCAGCTCCTCAGCCTCACAGGGCTGCAACAACCAGTAGCTCATGTGGCCTTGGAGG
GGCCAGGCCTCTCATCCTGGAGGACACACTGGACCCCCAGAGGGCCCAGAGTCATTTTTT
TTAACAGAAGGATTATTTTGTTGTGTTTTAATCTGTCACTCGGAACTTCAGGATAAGGGA
ACGTGACCTCCATCCTTCAGAGTCCCTGCTTAGGTTCAGGCCCTAGAGAAGGGTCAAAGC
CTGGGGGTAGGGAGCCACCAGCTACCGCTGCAGTGCCTTTGACCAGAGCAGCCTGAATGA
ACTGTGGCTCCGTCCTGCCCTGGGCATGGCCGTAGACTTCTAGGCCACTGGGAGTTGTGG
CTGGGCTTCCCTCCTTCCATGGAAACAGCTCCCTGTAGGGTGGGCAGATGGGCCTGGCCT
TGGGAAAGACATCCGGCTGCTGGTTGTCATGGTGACCAGGGACCGAACTGCTGTCTCTGA
ATGCTGAGTGAGTAAGCAAGGGAGGGAGAAGGGGCAATTGAGGGTCTGCCTGCCTTCTTG
GGGAGGCTTCTCTCCTTCGTGCTGCTTGCCCCTCTCAGGCTCACCCTTCTTTGGTTTCCC
CGAGGCCGCAGAGCCAGTCTGCCAGCTGCCCAGAGTGGTCCAGCCCTGACTTGCTGCAAC
CCCATTGCACAGGGCCCTGGGAATTCTCCTTCCACAGAGTCCCTGGGCCCAGACGTGCTG
TTACTGCCTTCTACCCAAAGAGTGGCCTCTCATCTCAATAGGGTGGGAGGTATTTTTTAA
CTGTTTTTTACTTTGGAAAATGTCACTGTGACACAAGCCAGTACGGTTACCCTGCCCCCA
CCTGCTCACCAGATCCCAGGCAGGAAAGCCTCTTCTTAACAGTTCATCCACTCTTCTGTC
CTGGTTGATAACCAGGGTTGTCTCTTGGTGCACTTTTGTGAGAGTGGATGAATGGGGGCA
GGGCCAAGAGTCCCCCTGTTAATCAGGGGTCTCTTTCTATACCCCAGATCTGACGCAAGG
CAGCGGAGAGCTGCTGTGTGATCCTTAGAGGGTCTGGTCCTAGTCAGAGCAGAGGGCCCC
TTCCATGCTGGTCCAGGCTCATCCACCCCACACTGCCCAGACAGCCTCAGGGTGCTGAAT
GCCTGATCTAGGCCTGGCAAGTGCCTGATACCCTAGCCTGGTTCCTGATTCCTGACCCTT
CTTGCACTGGCTGGGAAACCCTAGGCCACGTCAGACAGGACAACAATGCTGGGTTTTACA
TACAGGTATTAATAAAAATAGTTTGGCATTTCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATCAAGGACCTGAAGACCTCGAACAACCGGCTCCTCAACAAGCGGAGGAAGAAGCAG
GCAGGCAGCTCCTCAGCCTCACAGGGCTGCAACAACCAGTAGCTCATGTGGCCTTGGAGG
GGCCAGGCCTCTCATCCTGGAGGACACACTGGACCCCCAGAGGGCCCAGAGTCATTTTTT
TTAACAGAAGGATTATTTTGTTGTGTTTTAATCTGTCACTCGGAACTTCAGGATAAGGGA
ACGTGACCTCCATCCTTCAGAGTCCCTGCTTAGGTTCAGGCCCTAGAGAAGGGTCAAAGC
CTGGGGGTAGGGAGCCACCAGCTACCGCTGCAGTGCCTTTGACCAGAGCAGCCTGAATGA
ACTGTGGCTCCGTCCTGCCCTGGGCATGGCCGTAGACTTCTAGGCCACTGGGAGTTGTGG
CTGGGCTTCCCTCCTTCCATGGAAACAGCTCCCTGTAGGGTGGGCAGATGGGCCTGGCCT
TGGGAAAGACATCCGGCTGCTGGTTGTCATGGTGACCAGGGACCGAACTGCTGTCTCTGA
ATGCTGAGTGAGTAAGCAAGGGAGGGAGAAGGGGCAATTGAGGGTCTGCCTGCCTTCTTG
GGGAGGCTTCTCTCCTTCGTGCTGCTTGCCCCTCTCAGGCTCACCCTTCTTTGGTTTCCC
CGAGGCCGCAGAGCCAGTCTGCCAGCTGCCCAGAGTGGTCCAGCCCTGACTTGCTGCAAC
CCCATTGCACAGGGCCCTGGGAATTCTCCTTCCACAGAGTCCCTGGGCCCAGACGTGCTG
TTACTGCCTTCTACCCAAAGAGTGGCCTCTCATCTCAATAGGGTGGGAGGTATTTTTTAA
CTGTTTTTTACTTTGGAAAATGTCACTGTGACACAAGCCAGTACGGTTACCCTGCCCCCA
CCTGCTCACCAGATCCCAGGCAGGAAAGCCTCTTCTTAACAGTTCATCCACTCTTCTGTC
CTGGTTGATAACCAGGGTTGTCTCTTGGTGCACTTTTGTGAGAGTGGATGAATGGGGGCA
GGGCCAAGAGTCCCCCTGTTAATCAGGGGTCTCTTTCTATACCCCAGATCTGACGCAAGG
CAGCGGAGAGCTGCTGTGTGATCCTTAGAGGGTCTGGTCCTAGTCAGAGCAGAGGGCCCC
TTCCATGCTGGTCCAGGCTCATCCACCCCACACTGCCCAGACAGCCTCAGGGTGCTGAAT
GCCTGATCTAGGCCTGGCAAGTGCCTGATACCCTAGCCTGGTTCCTGATTCCTGACCCTT
CTTGCACTGGCTGGGAAACCCTAGGCCACGTCAGACAGGACAACAATGCTGGGTTTTACA
TACAGGTATTAATAAAAATAGTTTGGCATTTCCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-183, - strand, RNAz p=0.990963
               

               
               377-574, - strand, RNAz p=0.984292
               

               
               821-935, - strand, RNAz p=0.918474
               

               
               1016-1158, + strand, RNAz p=0.998052

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-183, - strand, RNAz p=0.990963
               

               
               377-574, - strand, RNAz p=0.984292
               

               
               821-935, - strand, RNAz p=0.918474
               

               
               1016-1158, + strand, RNAz p=0.998052

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004635, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004635, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1351, gnl|bosTau2|chr22 (38909967-38911352)
               

               
               1-1351, gnl|Hg17|chr3 (50660380-50661724)
               

               
               1-1351, gnl|Mm7|chr9 (106985732-106984382)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1351, gnl|bosTau2|chr22 (38909967-38911352)
               

               
               1-1351, gnl|Hg17|chr3 (50660380-50661724)
               

               
               1-1351, gnl|Mm7|chr9 (106985732-106984382)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	40-183, - strand, RNAz p=0.990963
	377-574, - strand, RNAz p=0.984292
	821-935, - strand, RNAz p=0.918474
	1016-1158, + strand, RNAz p=0.998052

	1-1351, gnl\|bosTau2\|chr22 (38909967-38911352)
	1-1351, gnl\|Hg17\|chr3 (50660380-50661724)
	1-1351, gnl\|Mm7\|chr9 (106985732-106984382)

	nms (0.213858)
	fhi (0.169578)
	nje (0.16592)
	pty (0.142714)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)