Ss1.1-LyN1-MLN01G020023.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGCTCAAATGCCTTCTCGGATTTCACTTTTTGAGCCTTTGCCTTCTGAGCACTCAGA AGGAAGTGCTGCCTGAGCTCAGTGCTGACTGTTGAATTGAGGGTGGGGTGCCAGGTACCT TCTGGAGCTGCCAGCAGCCTGACACGGTCAAAAGAGAGATGGCGGACGAGGCCACCCGGC GTGTGGTCTCTGAGATCCCGGTGCTGAAGACCAACGCCGGACCTCGAGATCGGGAGCTGT GGGTGCAGAGACTCAAGGAGGAATATCAGTCTCTAATCCGGTATGTGGAGAACAACAAGA ACGCGGACAATGATTGGTTCCGACTGGAGTCCAACAAGGAAGGGACTCGGTGGTTTGGAA AATGCTGGTATATCCATGACCTCCTCAAATATGAGTTTGACATCGAGTTTGACATTCCCA TAACATACCCCACTACTGCTCCAGAAATTGCAGTCCCTGAACTAGATGGAAAAACAGCAA AGATGTACAGGGGTGGCAAAATATGCCTAACGGATCACTTTAAGCCTTTGTGGGCCAGGA ACGTGCCTAAGTTTGGACTGGCTCATCTCATGGCTCTGGGGCTGGGCCCATGGCTGGCAG TGGAAATCCCTGATCTGATTCAGAAGGGAGTGATACAGCATAAAGAGAAATGCAACCAAT GAAGTACCGAGCCACTGAGGCAGTACAGAGGGACCTTTGATAGGTTATATTCCTGTTTTC CTGTGCATCATTCTTTTACTCATGTAACTGCTTCCCCCCATACCCCTTCACCTATAATTG TTATTGAGAAGCTGCAGCAGACACTGCTGAAAAAAAAGTACAGTATTGCTACTGAATTTC TGAATTGGGTTACACAGGAAGAGGAAAAACTAGGGCCTTGAAAAACCAAAGGGCAACTAA TATCCCTCTCCCAGGTGGAAAAATTTAAGATCCTGGAGGGATAGGTGGTGACTGAAAGTG GGTACATAGTATTTTTGGTTTGGGGTGGTAATTCATCAATAAAAGCTGCTTCCTTCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGCTCAAATGCCTTCTCGGATTTCACTTTTTGAGCCTTTGCCTTCTGAGCACTCAGA AGGAAGTGCTGCCTGAGCTCAGTGCTGACTGTTGAATTGAGGGTGGGGTGCCAGGTACCT TCTGGAGCTGCCAGCAGCCTGACACGGTCAAAAGAGAGATGGCGGACGAGGCCACCCGGC GTGTGGTCTCTGAGATCCCGGTGCTGAAGACCAACGCCGGACCTCGAGATCGGGAGCTGT GGGTGCAGAGACTCAAGGAGGAATATCAGTCTCTAATCCGGTATGTGGAGAACAACAAGA ACGCGGACAATGATTGGTTCCGACTGGAGTCCAACAAGGAAGGGACTCGGTGGTTTGGAA AATGCTGGTATATCCATGACCTCCTCAAATATGAGTTTGACATCGAGTTTGACATTCCCA TAACATACCCCACTACTGCTCCAGAAATTGCAGTCCCTGAACTAGATGGAAAAACAGCAA AGATGTACAGGGGTGGCAAAATATGCCTAACGGATCACTTTAAGCCTTTGTGGGCCAGGA ACGTGCCTAAGTTTGGACTGGCTCATCTCATGGCTCTGGGGCTGGGCCCATGGCTGGCAG TGGAAATCCCTGATCTGATTCAGAAGGGAGTGATACAGCATAAAGAGAAATGCAACCAAT GAAGTACCGAGCCACTGAGGCAGTACAGAGGGACCTTTGATAGGTTATATTCCTGTTTTC CTGTGCATCATTCTTTTACTCATGTAACTGCTTCCCCCCATACCCCTTCACCTATAATTG TTATTGAGAAGCTGCAGCAGACACTGCTGAAAAAAAAGTACAGTATTGCTACTGAATTTC TGAATTGGGTTACACAGGAAGAGGAAAAACTAGGGCCTTGAAAAACCAAAGGGCAACTAA TATCCCTCTCCCAGGTGGAAAAATTTAAGATCCTGGAGGGATAGGTGGTGACTGAAAGTG GGTACATAGTATTTTTGGTTTGGGGTGGTAATTCATCAATAAAAGCTGCTTCCTTCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 581-699, - strand, RNAz p=0.547835 | |
| 818-962, + strand, RNAz p=0.90046 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 581-699, - strand, RNAz p=0.547835 | |
| 818-962, + strand, RNAz p=0.90046 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_016406, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-156, gnl|bosTau2|chr3 (7883598-7883437) | |
| 3-156, gnl|canFam2|chr38 (24339779-24339407) | |
| 3-156, gnl|echTel1|scaffold_311345 (178074-177686) | |
| 3-156, gnl|hg17|chr1 (157915917-157916319) | |
| 3-156, gnl|Hg17|chr1 (157916028-157916180) | |
| 3-156, gnl|loxAfr1|scaffold_107701 (8161-8586) | |
| 3-156, gnl|mm7|chr1 (171299107-171298680) | |
| 3-156, gnl|Mm7|chr1 (171298999-171298827) | |
| 3-156, gnl|oryCun1|scaffold_208402 (92289-91844) | |
| 3-156, gnl|panTro1|chr1 (139983385-139983804) | |
| 3-156, gnl|rheMac2|chr1 (139743350-139743768) | |
| 3-156, gnl|rn3|chr13 (87417117-87416685) | |
| 157-281, gnl|bosTau2|chr3 (7637698-7637574) | |
| 157-281, gnl|canFam2|chr38 (24322497-24322361) | |
| 157-281, gnl|danRer3|chr4 (27924088-27924003) | |
| 157-281, gnl|dasNov1|scaffold_16381 (955-1090) | |
| 157-281, gnl|echTel1|scaffold_203441 (1687-1563) | |
| 157-281, gnl|fr1|chrUn (92961424-92961295) | |
| 157-281, gnl|Hg17|chr1 (157936859-157936983) | |
| 157-281, gnl|hg17|chr7 (77760484-77760620) | |
| 157-281, gnl|loxAfr1|scaffold_27453 (549-425) | |
| 157-281, gnl|Mm7|chr1 (171264851-171264727) | |
| 157-281, gnl|mm7|chr16 (84646080-84646210) | |
| 157-281, gnl|oryCun1|scaffold_208402 (59081-58951) | |
| 157-281, gnl|panTro1|chr6 (78940217-78940354) | |
| 157-281, gnl|rheMac2|chr3 (138831148-138831013) | |
| 157-281, gnl|rn3|chr13 (87377036-87376906) | |
| 157-281, gnl|tetNig1|chr4 (559230-559351) | |
| 581-1014, gnl|bosTau2|chr3 (7634445-7634015) | |
| 581-1014, gnl|Hg17|chr1 (157941274-157941713) | |
| 581-1014, gnl|Mm7|chr1 (171259065-171258662) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-156, gnl|bosTau2|chr3 (7883598-7883437) | |
| 3-156, gnl|canFam2|chr38 (24339779-24339407) | |
| 3-156, gnl|echTel1|scaffold_311345 (178074-177686) | |
| 3-156, gnl|hg17|chr1 (157915917-157916319) | |
| 3-156, gnl|Hg17|chr1 (157916028-157916180) | |
| 3-156, gnl|loxAfr1|scaffold_107701 (8161-8586) | |
| 3-156, gnl|mm7|chr1 (171299107-171298680) | |
| 3-156, gnl|Mm7|chr1 (171298999-171298827) | |
| 3-156, gnl|oryCun1|scaffold_208402 (92289-91844) | |
| 3-156, gnl|panTro1|chr1 (139983385-139983804) | |
| 3-156, gnl|rheMac2|chr1 (139743350-139743768) | |
| 3-156, gnl|rn3|chr13 (87417117-87416685) | |
| 157-281, gnl|bosTau2|chr3 (7637698-7637574) | |
| 157-281, gnl|canFam2|chr38 (24322497-24322361) | |
| 157-281, gnl|danRer3|chr4 (27924088-27924003) | |
| 157-281, gnl|dasNov1|scaffold_16381 (955-1090) | |
| 157-281, gnl|echTel1|scaffold_203441 (1687-1563) | |
| 157-281, gnl|fr1|chrUn (92961424-92961295) | |
| 157-281, gnl|Hg17|chr1 (157936859-157936983) | |
| 157-281, gnl|hg17|chr7 (77760484-77760620) | |
| 157-281, gnl|loxAfr1|scaffold_27453 (549-425) | |
| 157-281, gnl|Mm7|chr1 (171264851-171264727) | |
| 157-281, gnl|mm7|chr16 (84646080-84646210) | |
| 157-281, gnl|oryCun1|scaffold_208402 (59081-58951) | |
| 157-281, gnl|panTro1|chr6 (78940217-78940354) | |
| 157-281, gnl|rheMac2|chr3 (138831148-138831013) | |
| 157-281, gnl|rn3|chr13 (87377036-87376906) | |
| 157-281, gnl|tetNig1|chr4 (559230-559351) | |
| 581-1014, gnl|bosTau2|chr3 (7634445-7634015) | |
| 581-1014, gnl|Hg17|chr1 (157941274-157941713) | |
| 581-1014, gnl|Mm7|chr1 (171259065-171258662) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| rec (0.692281) | |
| pgl (0.592417) | |
| duo (0.518403) | |
| ece (0.45861) | |
| ski (0.440205) | |
| nca (0.410621) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| nje (0.33184) | |
| mga (0.32041) | |
| bfe (0.299715) | |
| fat (0.294855) | |
| cst (0.280073) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.692281) | |
| pgl (0.592417) | |
| duo (0.518403) | |
| ece (0.45861) | |
| ski (0.440205) | |
| nca (0.410621) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| nje (0.33184) | |
| mga (0.32041) | |
| bfe (0.299715) | |
| fat (0.294855) | |
| cst (0.280073) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ebs (0.118301) | |
| med (0.116252) |