Non-Coding RNA Search

Ss1.1-LyN1-MLN01G030025.5

Sequence:


               
               TGCCACCCTCCAGAGCAGGGATTGCGTTCGTTGGGTTTTTTGCGAGGGCCTTTTCGGCCT
CGGGTCCGCCCGTTACCCACTTGGCTGCCGGGATGGGCTCAGCTCTGCGGTGTTTGAGGC
GGCCCGAGAGGTGGTCGGGTAGTGGCACCTCCCGCTGGGTCTCTGGCCGCACCGCTTCAC
TCCTCACCGCGGCGGGAAGCGCCTTTTCCACAGGACATCAATGCAAGCCTGAATTTAAAA
AAAAGAATTTCTCTCTTCTAAGCCATGGCATATCAGTTGTACAGAAATACTACTTTGGGA
AACAGTCTTCAGGAGAGCCTCGATGAGCTTATACAGTCTCAACAGATTACCCCGCAACTT
GCCCTTCAAGTTCTCCTTCAGTTTGATAAAGCTATAAATTCAGCATTGGCACAGAGGGTC
AGGAATAGAGTCAACTTCAGGGGCTCTCTAAATACATACAGATTCTGCGATAATGTGTGG
ACTTTTGTATTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAA
GTGAAAATTGTAGCCTGTGATGGTAAAAATACTGGTTCCAATACTACAGAATGAATAGAA
GAATATGGCTTTTTAAAGCCATTCTCTGTTATTGTTCATCACTTTTTGAAGAGAAGCATA
GAAGAGACTTTTTTTTTAATTTATTCTAGCATTGCCGAAATGACTACACTGTGCTATACT
ATCAGAGAAACCCTGTAGAAAGAAGCTTATAACTGTACCCTCTTACGTTTATTCTACAGC
ATGAAGAAACCGAACTTTTTTTTTAATGACAAATCAAATGTTGTTGCCTTTCTAAGACCA
TTCTGTAATAAATTCATTTTAAAACTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCACCCTCCAGAGCAGGGATTGCGTTCGTTGGGTTTTTTGCGAGGGCCTTTTCGGCCT
CGGGTCCGCCCGTTACCCACTTGGCTGCCGGGATGGGCTCAGCTCTGCGGTGTTTGAGGC
GGCCCGAGAGGTGGTCGGGTAGTGGCACCTCCCGCTGGGTCTCTGGCCGCACCGCTTCAC
TCCTCACCGCGGCGGGAAGCGCCTTTTCCACAGGACATCAATGCAAGCCTGAATTTAAAA
AAAAGAATTTCTCTCTTCTAAGCCATGGCATATCAGTTGTACAGAAATACTACTTTGGGA
AACAGTCTTCAGGAGAGCCTCGATGAGCTTATACAGTCTCAACAGATTACCCCGCAACTT
GCCCTTCAAGTTCTCCTTCAGTTTGATAAAGCTATAAATTCAGCATTGGCACAGAGGGTC
AGGAATAGAGTCAACTTCAGGGGCTCTCTAAATACATACAGATTCTGCGATAATGTGTGG
ACTTTTGTATTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAA
GTGAAAATTGTAGCCTGTGATGGTAAAAATACTGGTTCCAATACTACAGAATGAATAGAA
GAATATGGCTTTTTAAAGCCATTCTCTGTTATTGTTCATCACTTTTTGAAGAGAAGCATA
GAAGAGACTTTTTTTTTAATTTATTCTAGCATTGCCGAAATGACTACACTGTGCTATACT
ATCAGAGAAACCCTGTAGAAAGAAGCTTATAACTGTACCCTCTTACGTTTATTCTACAGC
ATGAAGAAACCGAACTTTTTTTTTAATGACAAATCAAATGTTGTTGCCTTTCTAAGACCA
TTCTGTAATAAATTCATTTTAAAACTCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16758064|ref|NP_445797.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16758064|ref|NP_445797.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               285-422, gnl|bosTau2|chr11 (43014432-43014569)
               

               
               285-422, gnl|Hg17|chr8 (30309315-30309191)
               

               
               285-422, gnl|Mm7|chr13 (3497380-3497517)
               


               
               441-876, gnl|bosTau2|chr11 (43014660-43015097)
               

               
               441-876, gnl|Hg17|chr8 (30309172-30308735)
               

               
               441-876, gnl|Mm7|chr13 (3497536-3498152)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               285-422, gnl|bosTau2|chr11 (43014432-43014569)
               

               
               285-422, gnl|Hg17|chr8 (30309315-30309191)
               

               
               285-422, gnl|Mm7|chr13 (3497380-3497517)
               


               
               441-876, gnl|bosTau2|chr11 (43014660-43015097)
               

               
               441-876, gnl|Hg17|chr8 (30309172-30308735)
               

               
               441-876, gnl|Mm7|chr13 (3497536-3498152)

Expressed library(ies): 42 entry(ies)

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Expressed library(ies): 42 entry(ies)

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               pro (1.02407)
               

               
               cki (0.660939)
               

               
               sme (0.610874)
               

               
               fat (0.58971)
               

               
               cte (0.58548)
               

               
               ova (0.516529)
               

               
               isp (0.451128)
               

               
               tes (0.415628)
               

               
               fli (0.405762)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               cki (0.660939)
               

               
               sme (0.610874)
               

               
               fat (0.58971)
               

               
               cte (0.58548)
               

               
               ova (0.516529)
               

               
               isp (0.451128)
               

               
               tes (0.415628)
               

               
               fli (0.405762)
               

               
               cut (0.339847)
               

               
               nco (0.323468)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	285-422, gnl\|bosTau2\|chr11 (43014432-43014569)
	285-422, gnl\|Hg17\|chr8 (30309315-30309191)
	285-422, gnl\|Mm7\|chr13 (3497380-3497517)

	441-876, gnl\|bosTau2\|chr11 (43014660-43015097)
	441-876, gnl\|Hg17\|chr8 (30309172-30308735)
	441-876, gnl\|Mm7\|chr13 (3497536-3498152)

	pro (1.02407)
	cki (0.660939)
	sme (0.610874)
	fat (0.58971)
	cte (0.58548)
	ova (0.516529)
	isp (0.451128)
	tes (0.415628)
	fli (0.405762)
	cut (0.339847)
	nco (0.323468)
	cst (0.280073)
	che (0.272628)
	fce (0.271592)
	ste (0.270416)
	ret (0.257467)
	mgp (0.230681)
	hea (0.204499)
	fcc (0.197785)
	nlu (0.191681)
	gul (0.177588)
	fbs (0.175346)
	cje (0.165235)
	tbr (0.154178)
	lun (0.150489)
	ski (0.146735)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	nca (0.136874)
	ssp (0.13552)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	eep (0.122564)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)