Non-Coding RNA Search

Ss1.1-LyN1-MLN01G030057.5

Sequence:


               
               TTTTTTTTTTTTATTAAAGCTTTTACATTCTTTATTTTCATCAGGCTCAAAATCAGTTTC
CACACGATCTCCTGCATTTTCCCCACGGCCATGGTGTCTGGCCTGGTGTCTGGGACCCCG
TGTCTGGGCTGATCCATCGACACACTCCCACCATGCAGTGGTCCTCTCGGGCCGCGGACA
GTCCTCAGCCCACCATCACCGCCCCGAAGAAGGTCTTTCCTCTCCTGTAATCCACCATAT
CGGGGTGACTGATATTAACGTACACCCTCTCGCCCCTCCGGAGCTGCACCAGGCCACCGA
ACCCCACGCTCGTGTACCAGAGGGGCCCGTACTCGTGCCTCCGACTGGGGTCCAAGACCG
GAGTCACAGTCTCCGCGCCCTCCAGCAGCAGCTCGGGAGTCCCCGGTCCGTAGGCGCCCC
CCGCCCGGTACAGCCGGCTGAGCAGCGTGACCGAGCGGTCCAGGGGGTCCCCGCCGGGAG
GAGGTGCCCGGCCCCGGTAGCCGACGTGACAGTAGAGGTAGTAGAGGCCGTCCTGCGGGA
GGGCCAGGCCCTCCGCGCCAGAGAACTGCGTCCCGCTCCTCAGAAACGCCTCTTCTTTCT
TCGCCTCCCAGCCTAGCCCCTGACCCGTGATCCAAGCGCCAATGAGGTGGGCAGCTGGGA
GCCTGGGGCTGAGATCTGTTTCTGCCTCCTCCTCTGGCGTCTCCTTGGACTCCAATCGCT
GCTGGGCCTCCGCCTGGGTGCCTGGGTCAGCGGTCCCTGTTACCAGTTCTCCCTGCTCCT
GGGGCACCAAGGCCAGCACAGCCAGGACCGTGATAGGCACGGCCAGCAGGAGGGTCACCA
GGGAAGTGGCCCCTGCCACGGCCAGCAGGAGGCATCCCTTCCCCTGGGGCCTCCTACCCC
GGCCCTCCAGCCCCGGTGCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTATTAAAGCTTTTACATTCTTTATTTTCATCAGGCTCAAAATCAGTTTC
CACACGATCTCCTGCATTTTCCCCACGGCCATGGTGTCTGGCCTGGTGTCTGGGACCCCG
TGTCTGGGCTGATCCATCGACACACTCCCACCATGCAGTGGTCCTCTCGGGCCGCGGACA
GTCCTCAGCCCACCATCACCGCCCCGAAGAAGGTCTTTCCTCTCCTGTAATCCACCATAT
CGGGGTGACTGATATTAACGTACACCCTCTCGCCCCTCCGGAGCTGCACCAGGCCACCGA
ACCCCACGCTCGTGTACCAGAGGGGCCCGTACTCGTGCCTCCGACTGGGGTCCAAGACCG
GAGTCACAGTCTCCGCGCCCTCCAGCAGCAGCTCGGGAGTCCCCGGTCCGTAGGCGCCCC
CCGCCCGGTACAGCCGGCTGAGCAGCGTGACCGAGCGGTCCAGGGGGTCCCCGCCGGGAG
GAGGTGCCCGGCCCCGGTAGCCGACGTGACAGTAGAGGTAGTAGAGGCCGTCCTGCGGGA
GGGCCAGGCCCTCCGCGCCAGAGAACTGCGTCCCGCTCCTCAGAAACGCCTCTTCTTTCT
TCGCCTCCCAGCCTAGCCCCTGACCCGTGATCCAAGCGCCAATGAGGTGGGCAGCTGGGA
GCCTGGGGCTGAGATCTGTTTCTGCCTCCTCCTCTGGCGTCTCCTTGGACTCCAATCGCT
GCTGGGCCTCCGCCTGGGTGCCTGGGTCAGCGGTCCCTGTTACCAGTTCTCCCTGCTCCT
GGGGCACCAAGGCCAGCACAGCCAGGACCGTGATAGGCACGGCCAGCAGGAGGGTCACCA
GGGAAGTGGCCCCTGCCACGGCCAGCAGGAGGCATCCCTTCCCCTGGGGCCTCCTACCCC
GGCCCTCCAGCCCCGGTGCCCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6624723|emb|CAB63851.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6624723|emb|CAB63851.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               801-924, - strand, RNAz p=0.919697
               

               
               825-924, - strand, RNAz p=0.847995

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-924, - strand, RNAz p=0.919697
               

               
               825-924, - strand, RNAz p=0.847995

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               22-640, gnl|bosTau2|chr23 (23246390-23247009)
               

               
               22-640, gnl|Hg17|chr6 (31656334-31656920)
               

               
               22-640, gnl|Mm7|chr17 (33292719-33292122)
               


               
               762-924, gnl|bosTau2|chr23 (23248228-23248390)
               

               
               762-924, gnl|canFam2|chr12 (4084003-4084607)
               

               
               762-924, gnl|dasNov1|scaffold_73543 (6232-6826)
               

               
               762-924, gnl|echTel1|scaffold_245581 (1539-2150)
               

               
               762-924, gnl|hg17|chr6 (31657853-31658448)
               

               
               762-924, gnl|Hg17|chr6 (31658010-31658172)
               

               
               762-924, gnl|loxAfr1|scaffold_17944 (52055-52648)
               

               
               762-924, gnl|mm7|chr17 (33291243-33290673)
               

               
               762-924, gnl|Mm7|chr17 (33291104-33290942)
               

               
               762-924, gnl|monDom2|scaffold_42 (17910308-17909637)
               

               
               762-924, gnl|oryCun1|scaffold_200762 (30842-30237)
               

               
               762-924, gnl|panTro1|chr5 (32053817-32054411)
               

               
               762-924, gnl|rheMac2|chr4 (31217154-31217748)
               

               
               762-924, gnl|rn3|chr20 (3668248-3668790)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-640, gnl|bosTau2|chr23 (23246390-23247009)
               

               
               22-640, gnl|Hg17|chr6 (31656334-31656920)
               

               
               22-640, gnl|Mm7|chr17 (33292719-33292122)
               


               
               762-924, gnl|bosTau2|chr23 (23248228-23248390)
               

               
               762-924, gnl|canFam2|chr12 (4084003-4084607)
               

               
               762-924, gnl|dasNov1|scaffold_73543 (6232-6826)
               

               
               762-924, gnl|echTel1|scaffold_245581 (1539-2150)
               

               
               762-924, gnl|hg17|chr6 (31657853-31658448)
               

               
               762-924, gnl|Hg17|chr6 (31658010-31658172)
               

               
               762-924, gnl|loxAfr1|scaffold_17944 (52055-52648)
               

               
               762-924, gnl|mm7|chr17 (33291243-33290673)
               

               
               762-924, gnl|Mm7|chr17 (33291104-33290942)
               

               
               762-924, gnl|monDom2|scaffold_42 (17910308-17909637)
               

               
               762-924, gnl|oryCun1|scaffold_200762 (30842-30237)
               

               
               762-924, gnl|panTro1|chr5 (32053817-32054411)
               

               
               762-924, gnl|rheMac2|chr4 (31217154-31217748)
               

               
               762-924, gnl|rn3|chr20 (3668248-3668790)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               csp (0.644745)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               nco (0.323468)
               

               
               med (0.232504)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.644745)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               nco (0.323468)
               

               
               med (0.232504)
               

               
               fbs (0.175346)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	801-924, - strand, RNAz p=0.919697
	825-924, - strand, RNAz p=0.847995

	22-640, gnl\|bosTau2\|chr23 (23246390-23247009)
	22-640, gnl\|Hg17\|chr6 (31656334-31656920)
	22-640, gnl\|Mm7\|chr17 (33292719-33292122)

	762-924, gnl\|bosTau2\|chr23 (23248228-23248390)
	762-924, gnl\|canFam2\|chr12 (4084003-4084607)
	762-924, gnl\|dasNov1\|scaffold_73543 (6232-6826)
	762-924, gnl\|echTel1\|scaffold_245581 (1539-2150)
	762-924, gnl\|hg17\|chr6 (31657853-31658448)
	762-924, gnl\|Hg17\|chr6 (31658010-31658172)
	762-924, gnl\|loxAfr1\|scaffold_17944 (52055-52648)
	762-924, gnl\|mm7\|chr17 (33291243-33290673)
	762-924, gnl\|Mm7\|chr17 (33291104-33290942)
	762-924, gnl\|monDom2\|scaffold_42 (17910308-17909637)
	762-924, gnl\|oryCun1\|scaffold_200762 (30842-30237)
	762-924, gnl\|panTro1\|chr5 (32053817-32054411)
	762-924, gnl\|rheMac2\|chr4 (31217154-31217748)
	762-924, gnl\|rn3\|chr20 (3668248-3668790)

	csp (0.644745)
	cag (0.453583)
	cly (0.361925)
	nco (0.323468)
	med (0.232504)
	fbs (0.175346)
	cli (0.152812)
	lnt (0.142308)
	cov (0.132153)
	eru (0.120048)