Ss1.1-LyN1-MLN01G030074.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAATCGGAAGTTCTGGGCTGCAGTTGCGTGGAAATGGGCACTGGTGGGCGGAGTGGGCT TCGGCCAGGCAAGGGGAACGCAGAAGGGGTGACAGCGGGAAAGGGGAAGGCGGATGGGGT GGCAGTGACTCCTACTGCTGCCTCAGCCTCCTGCCAGTACAGGTGTATCGAATGCAACCA GGAGGCCAAGGAGTTGTACCGAGACTATAACCACGGCGTGCTGAAGATAACCATCTGTAA ATCCTGCCAGAAACCTGTAGACAAATACATCGAGTATGATCCTGTTATCATCTTGATTAA TGCTATTTTATGCAAAGCCCAGGCCTACAGGCATATTCTTTTCAATACTAAAATAAACAT GCATGGAAAACTCTGCGTCTTCTGTTTGCTATGTGAAGCTTACCTGAGATGGTGGCAGCT TCAAGATTCGAGCCGGATCACTGATCCTGATGACTTTATCAGATATGCCAAGGAATGGGA TTTCTATAGAATGTTTGCAATTGCTTCTCTAGAACAAACTGCCTATTTTAGTGGCATTTT TACTTTCCTGTGGGTAGAACGACCCCTAAGAGCGAAAAAAAAACTCAACTTCGTTTTGCT GCTGAAAGCATTATTATTATCCAGCTACGGAAAACTCCTGCTGATTCCAGCTGTCATTTG GGAACATGATTACACACCCCTGTGCCTCAGACTCATTAAAGTATTTGTCCTCACATCAAA CTTTCAGGCAATTAGAGTGACCCTGAATGTCAGCCGCAAGCTCTCCTTCTTGGCCATCCT GAGTGGCTTACTGGTGGAGAGCACCATGGTCTACTTCTTCCAGAGGATGGAATGGGCTGT CGGAAGCGACTGTGCCATCTACAAGTCTCAAGACTTTTGAAGAGTTTCATTCTTTACCAT CTGTGGCATGACCAGCTGCATCCGTAAAACAGAAGACATAAAATATAAACCACGCTTCTC ATTATTGTTGTGTAAAATGAAGCAAAGATCTGGATATGCTTCCTGGGGAAAAAAAAGCAA CGATTATGGTGCTGGGGACTCCTAACCCATCACCCCAGCCCTACATGTAGGAAACAGAGC AGGTACAGATTTGCACACACAGACACTCAGACACAAGGAATGTTGCCACAGGAAGGGACG TACACAGCAAGTGACGAGGTTGACCTTCTAGACTCTTCAGGTAAGCGTTCAGGCTGAAGG AACACGAACTCCTGAGTCACAGATAAGAAGATAAGAAGAGCTCTGTTTCATTCCTTTGCC GTATTTATATTTATATTTAAATGTTAATGGTTAAACTGAGCTTTTGTGAATTTTCAATTC AGTATCTTCTCCTGTGACTAAGTTACTCTCTGAAATCAGCTGATCCAAAAAGAAATAACT AAAAACAGCTGCCTTGTACACTTTACAGGAGTGAAGTATATCTCAGCAGAGCTGTTATTA AATAAATAGTTGTGTCACCTGTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAATCGGAAGTTCTGGGCTGCAGTTGCGTGGAAATGGGCACTGGTGGGCGGAGTGGGCT TCGGCCAGGCAAGGGGAACGCAGAAGGGGTGACAGCGGGAAAGGGGAAGGCGGATGGGGT GGCAGTGACTCCTACTGCTGCCTCAGCCTCCTGCCAGTACAGGTGTATCGAATGCAACCA GGAGGCCAAGGAGTTGTACCGAGACTATAACCACGGCGTGCTGAAGATAACCATCTGTAA ATCCTGCCAGAAACCTGTAGACAAATACATCGAGTATGATCCTGTTATCATCTTGATTAA TGCTATTTTATGCAAAGCCCAGGCCTACAGGCATATTCTTTTCAATACTAAAATAAACAT GCATGGAAAACTCTGCGTCTTCTGTTTGCTATGTGAAGCTTACCTGAGATGGTGGCAGCT TCAAGATTCGAGCCGGATCACTGATCCTGATGACTTTATCAGATATGCCAAGGAATGGGA TTTCTATAGAATGTTTGCAATTGCTTCTCTAGAACAAACTGCCTATTTTAGTGGCATTTT TACTTTCCTGTGGGTAGAACGACCCCTAAGAGCGAAAAAAAAACTCAACTTCGTTTTGCT GCTGAAAGCATTATTATTATCCAGCTACGGAAAACTCCTGCTGATTCCAGCTGTCATTTG GGAACATGATTACACACCCCTGTGCCTCAGACTCATTAAAGTATTTGTCCTCACATCAAA CTTTCAGGCAATTAGAGTGACCCTGAATGTCAGCCGCAAGCTCTCCTTCTTGGCCATCCT GAGTGGCTTACTGGTGGAGAGCACCATGGTCTACTTCTTCCAGAGGATGGAATGGGCTGT CGGAAGCGACTGTGCCATCTACAAGTCTCAAGACTTTTGAAGAGTTTCATTCTTTACCAT CTGTGGCATGACCAGCTGCATCCGTAAAACAGAAGACATAAAATATAAACCACGCTTCTC ATTATTGTTGTGTAAAATGAAGCAAAGATCTGGATATGCTTCCTGGGGAAAAAAAAGCAA CGATTATGGTGCTGGGGACTCCTAACCCATCACCCCAGCCCTACATGTAGGAAACAGAGC AGGTACAGATTTGCACACACAGACACTCAGACACAAGGAATGTTGCCACAGGAAGGGACG TACACAGCAAGTGACGAGGTTGACCTTCTAGACTCTTCAGGTAAGCGTTCAGGCTGAAGG AACACGAACTCCTGAGTCACAGATAAGAAGATAAGAAGAGCTCTGTTTCATTCCTTTGCC GTATTTATATTTATATTTAAATGTTAATGGTTAAACTGAGCTTTTGTGAATTTTCAATTC AGTATCTTCTCCTGTGACTAAGTTACTCTCTGAAATCAGCTGATCCAAAAAGAAATAACT AAAAACAGCTGCCTTGTACACTTTACAGGAGTGAAGTATATCTCAGCAGAGCTGTTATTA AATAAATAGTTGTGTCACCTGTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 239-358, - strand, RNAz p=0.556905 | |
| 266-358, + strand, RNAz p=0.598393 | |
| 494-612, - strand, RNAz p=0.784115 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 239-358, - strand, RNAz p=0.556905 | |
| 266-358, + strand, RNAz p=0.598393 | |
| 494-612, - strand, RNAz p=0.784115 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-238, gnl|bosTau2|chr28 (1443651-1443891) | |
| 1-238, gnl|Hg17|chr1 (227421553-227421760) | |
| 239-358, gnl|bosTau2|chr28 (1355284-1355165) | |
| 239-358, gnl|canFam2|chr4 (11417800-11417659) | |
| 239-358, gnl|danRer3|chr17 (9562011-9561875) | |
| 239-358, gnl|dasNov1|scaffold_16729 (36254-36370) | |
| 239-358, gnl|echTel1|scaffold_291099 (5992-5849) | |
| 239-358, gnl|fr1|chrUn (318795704-318795843) | |
| 239-358, gnl|galGal2|chr3 (36750817-36750958) | |
| 239-358, gnl|hg17|chr1 (227430799-227430940) | |
| 239-358, gnl|Hg17|chr1 (227430801-227430920) | |
| 239-358, gnl|loxAfr1|scaffold_50185 (1786-1925) | |
| 239-358, gnl|mm7|chr8 (123312401-123312541) | |
| 239-358, gnl|Mm7|chr8 (123312403-123312522) | |
| 239-358, gnl|monDom2|scaffold_13 (59554198-59554337) | |
| 239-358, gnl|oryCun1|scaffold_88827 (3663-3807) | |
| 239-358, gnl|panTro1|chr1 (211281222-211281363) | |
| 239-358, gnl|rheMac2|chr1 (225970009-225969868) | |
| 239-358, gnl|rn3|chr19 (54912259-54912399) | |
| 239-358, gnl|tetNig1|chr14 (1351719-1351580) | |
| 239-358, gnl|xenTro1|scaffold_243 (148872-148731) | |
| 494-737, gnl|bosTau2|chr28 (1346272-1346029) | |
| 494-737, gnl|Hg17|chr1 (227438222-227438465) | |
| 494-737, gnl|Mm7|chr8 (123317926-123318163) | |
| 848-1307, gnl|bosTau2|chr28 (1341985-1341552) | |
| 848-1307, gnl|Hg17|chr1 (227442581-227443028) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-238, gnl|bosTau2|chr28 (1443651-1443891) | |
| 1-238, gnl|Hg17|chr1 (227421553-227421760) | |
| 239-358, gnl|bosTau2|chr28 (1355284-1355165) | |
| 239-358, gnl|canFam2|chr4 (11417800-11417659) | |
| 239-358, gnl|danRer3|chr17 (9562011-9561875) | |
| 239-358, gnl|dasNov1|scaffold_16729 (36254-36370) | |
| 239-358, gnl|echTel1|scaffold_291099 (5992-5849) | |
| 239-358, gnl|fr1|chrUn (318795704-318795843) | |
| 239-358, gnl|galGal2|chr3 (36750817-36750958) | |
| 239-358, gnl|hg17|chr1 (227430799-227430940) | |
| 239-358, gnl|Hg17|chr1 (227430801-227430920) | |
| 239-358, gnl|loxAfr1|scaffold_50185 (1786-1925) | |
| 239-358, gnl|mm7|chr8 (123312401-123312541) | |
| 239-358, gnl|Mm7|chr8 (123312403-123312522) | |
| 239-358, gnl|monDom2|scaffold_13 (59554198-59554337) | |
| 239-358, gnl|oryCun1|scaffold_88827 (3663-3807) | |
| 239-358, gnl|panTro1|chr1 (211281222-211281363) | |
| 239-358, gnl|rheMac2|chr1 (225970009-225969868) | |
| 239-358, gnl|rn3|chr19 (54912259-54912399) | |
| 239-358, gnl|tetNig1|chr14 (1351719-1351580) | |
| 239-358, gnl|xenTro1|scaffold_243 (148872-148731) | |
| 494-737, gnl|bosTau2|chr28 (1346272-1346029) | |
| 494-737, gnl|Hg17|chr1 (227438222-227438465) | |
| 494-737, gnl|Mm7|chr8 (123317926-123318163) | |
| 848-1307, gnl|bosTau2|chr28 (1341985-1341552) | |
| 848-1307, gnl|Hg17|chr1 (227442581-227443028) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cbr (1.27975) | |
| duo (0.518403) | |
| pro (0.512033) | |
| cbl (0.344392) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sin (0.174948) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.27975) | |
| duo (0.518403) | |
| pro (0.512033) | |
| cbl (0.344392) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sin (0.174948) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |