Non-Coding RNA Search

Ss1.1-LyN1-MLN01G030081.5

Sequence:


               
               AACACGCTCTGAGCCTCTGGTCCAGCGGTATCGGAGCCGCCATCATGGTGCGGAAGCTTA
AGTTCCACGAGCAAAAGCTGCTGAAGCAGGTGGACTTCCTAAACTGGGAGGTCACCGACC
ATAACCTGCATGAGCTTCGCGTGTTGCGGCGTTATCGGCTGCAGCGGCGGGAGGACTACA
CGCGCTACAACCAACTGAGCCGTGCTGTACGCGAACTGGCGCGGCGCCTGCGGGACTTGC
CGGAGCGGGACCCTTTTCGCGTGCGCGCTTCGGCAGCGCTGCTGGACAAGCTGTATGCTC
TCGGCCTAGTGCCCACGCGCGGGTCGCTGGAACTATGCGATTTCGTCACTGCCTCGTCCT
TTTGCCGCCGCCGCCTGCCCACGGTGCTCCTTAAGCTGCGCATGGCTCAACACCTCCAGG
CCGCCGTGACTTTCGTAGAGCAGGGCCACGTGCGCGTGGGCCCCGACGTGGTCACGGATC
CCGCCTTCCTTGTCACGCGCAGCATGGAGGACTTTGTTACCTGGGTTGACTCGTCCAAGA
TCAAGCGGCACGTGCTGGAGTACAATGAGGAGCGTGACGACTTCGATCTGGAAGCCTAGC
GGGTCCTCCCTCCCTAGGACGGCATTTTATAGATGCAGAAGCCCAGACCTGATGCCTGAG
ATTCTGTGAGGACGCTCTCCCAGAAGTGTGTCAGCTAGTCGTCGGTTATTAAGAACTTGG
CTCCTCAGCTACAAGCCACGCGCGGAGCCAAAGGGTACGCCCGTTTTCCACGAATTTTTC
TTAGCCTTTGGACGATTTAGAATTAAATGACTGCCTTTAGAGACCATGAGAAGCGGTTTT
GTGCTTCACTGGGGAGTTGTTAGATTTTGGTACCTGAAACATCGTAGTGTGAAAGAAAGG
ACTTTGCGGGGGGGGGCACCCCTACATTTCCCTTTCATCTTCTTGTAGGACAGTTTGGTT
TAACTTATTTAACTCGAATTCTTACTCCTCTTCTTGATTAAGCTGTGTACAGATGTTGGA
GAGTTTGGTCTCAAGTTTTCATAAAATGGGTGATATTTTAGTGTTCTGAGTCTTTTTTTC
TTGTTTAAAGGAATGCTCTCCTAATGCCAATAAATGGCTTAACTACCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACGCTCTGAGCCTCTGGTCCAGCGGTATCGGAGCCGCCATCATGGTGCGGAAGCTTA
AGTTCCACGAGCAAAAGCTGCTGAAGCAGGTGGACTTCCTAAACTGGGAGGTCACCGACC
ATAACCTGCATGAGCTTCGCGTGTTGCGGCGTTATCGGCTGCAGCGGCGGGAGGACTACA
CGCGCTACAACCAACTGAGCCGTGCTGTACGCGAACTGGCGCGGCGCCTGCGGGACTTGC
CGGAGCGGGACCCTTTTCGCGTGCGCGCTTCGGCAGCGCTGCTGGACAAGCTGTATGCTC
TCGGCCTAGTGCCCACGCGCGGGTCGCTGGAACTATGCGATTTCGTCACTGCCTCGTCCT
TTTGCCGCCGCCGCCTGCCCACGGTGCTCCTTAAGCTGCGCATGGCTCAACACCTCCAGG
CCGCCGTGACTTTCGTAGAGCAGGGCCACGTGCGCGTGGGCCCCGACGTGGTCACGGATC
CCGCCTTCCTTGTCACGCGCAGCATGGAGGACTTTGTTACCTGGGTTGACTCGTCCAAGA
TCAAGCGGCACGTGCTGGAGTACAATGAGGAGCGTGACGACTTCGATCTGGAAGCCTAGC
GGGTCCTCCCTCCCTAGGACGGCATTTTATAGATGCAGAAGCCCAGACCTGATGCCTGAG
ATTCTGTGAGGACGCTCTCCCAGAAGTGTGTCAGCTAGTCGTCGGTTATTAAGAACTTGG
CTCCTCAGCTACAAGCCACGCGCGGAGCCAAAGGGTACGCCCGTTTTCCACGAATTTTTC
TTAGCCTTTGGACGATTTAGAATTAAATGACTGCCTTTAGAGACCATGAGAAGCGGTTTT
GTGCTTCACTGGGGAGTTGTTAGATTTTGGTACCTGAAACATCGTAGTGTGAAAGAAAGG
ACTTTGCGGGGGGGGGCACCCCTACATTTCCCTTTCATCTTCTTGTAGGACAGTTTGGTT
TAACTTATTTAACTCGAATTCTTACTCCTCTTCTTGATTAAGCTGTGTACAGATGTTGGA
GAGTTTGGTCTCAAGTTTTCATAAAATGGGTGATATTTTAGTGTTCTGAGTCTTTTTTTC
TTGTTTAAAGGAATGCTCTCCTAATGCCAATAAATGGCTTAACTACCAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               IM3H_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               IM3H_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               13-170, - strand, RNAz p=0.813736
               

               
               403-518, + strand, RNAz p=0.783667

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-170, - strand, RNAz p=0.813736
               

               
               403-518, + strand, RNAz p=0.783667

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               13-916, gnl|bosTau2|chr9 (54728172-54727288)
               

               
               13-916, gnl|Hg17|chr15 (73719588-73718700)
               

               
               13-916, gnl|Mm7|chr9 (56965169-56965933)
               


               
               933-1140, gnl|bosTau2|chr9 (54727234-54727025)
               

               
               933-1140, gnl|Hg17|chr15 (73718675-73718489)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-916, gnl|bosTau2|chr9 (54728172-54727288)
               

               
               13-916, gnl|Hg17|chr15 (73719588-73718700)
               

               
               13-916, gnl|Mm7|chr9 (56965169-56965933)
               


               
               933-1140, gnl|bosTau2|chr9 (54727234-54727025)
               

               
               933-1140, gnl|Hg17|chr15 (73718675-73718489)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               cbr (0.383926)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	13-170, - strand, RNAz p=0.813736
	403-518, + strand, RNAz p=0.783667

	13-916, gnl\|bosTau2\|chr9 (54728172-54727288)
	13-916, gnl\|Hg17\|chr15 (73719588-73718700)
	13-916, gnl\|Mm7\|chr9 (56965169-56965933)

	933-1140, gnl\|bosTau2\|chr9 (54727234-54727025)
	933-1140, gnl\|Hg17\|chr15 (73718675-73718489)

	cbr (0.383926)
	fce (0.271592)
	ste (0.270416)
	pla (0.267344)
	ecc (0.23007)
	nms (0.213858)
	cty (0.20816)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	fty (0.17584)
	sin (0.174948)
	cje (0.165235)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	bla (0.124347)
	pgl (0.118483)
	med (0.116252)
	cbl (0.114797)