Ss1.1-LyN1-MLN01G040014.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGCAGGATTGATGAAGCGTTGGGGTAGTGTGACTTACTCAAGTTCCTGATTACGCAGG GATCAAAAGAGTGGCTGTAGTTTGCACCTTTGGCACGCAGGACTTAGCATCTAGAGACAC TGGCTCTTAAGAGATTTGACGACAGTATCTGGTCTGAGTGAAAGTGTCTCGGGCCAGATT CTCAGGTTTTCATACAGAATAGTGGGTGTCGCGATTTGGTTAAGGGCCCAGGAACTAGTC TCAGAGTTCAGATCCCGCCGATGGTTCCCCCACGCCGGGGTTGCTGAGGACGCCAAGGTC TCTCCCCCAGGGCCATGGCCGACTCGACGTTGCTGGTGCCGGAGCTAAACGAAGCAGAGA CGATGGGCACGGAGACGACGCCTTTCGAGGAGCTGCTGCTGCAGGCCTCCAAGGAGCTCC AGCAAGCCCAAACAAGCCGACCAGAATCTACACAGATACAACCTCAACCTGGTTTCTGCA TAAAGACCAACTCATCTGAAGGCAAGGTTTTCATCAACATCTGTCACTCTCCCTCCATCC CTCCTCCGGCTGACTTGACTGAGGACGAGCTGCTTCAAATGCTGGAGGAGGACCAAGCCG GGTTCCGCATCCCCATGAGTCTGGGAGAGCCGCATGCCGAACTGGATGCAAAAGGCCAGG GTTGTACCGCCTACGACGTAGCTGTCAACAGCGACTTCTACCGGAGGATGCAGAACAGCG ATTTCTTGAGAGAGCTGGTGATCACCATCGCCAGGGAGGGCCTTGAGGACAAATACAGCC TGCGACTGAATCCAGAGTGGCGCGTTTTGAAGAACAGACCTTTCCTGGGTGCCATCTCCC AGCAAAACATCCGCTCCCAGCAGCGTCCTCGGATCCAGGAGCTGGGGAACCTGTACACAC CCGACTCCCCTACACCTGAGGACCGCCCCGAGAAGCCTCATCTGAACCTTTGGCTGGAGG CCCCTGACCTCCTCTTAGCGGAAATCGACCTCCCCAGACTGGATGGAGCTCTTGGGCTGT CGCTGGAGATTGGGGAGAATCGCCTGGTGATGACGGGCCCCCAGCAGCTGTACCATCTGG ATGCCTACATCCCCCTGCGGATCAACGGTGATGAGAGCAAGGCAGCCTTCCATCGGAAGA GAAAGCAATTGATGGTGGCGATGCCTCTTCTGTAGCCCCTTCTTGACCGGGTGTCTCCCT GTGCTTCTGTGTGAAGAGGGGAGGCTGGTGGCTTCCCTAAACCTGAAATAAAAGATTTTT GCCTTTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGCAGGATTGATGAAGCGTTGGGGTAGTGTGACTTACTCAAGTTCCTGATTACGCAGG GATCAAAAGAGTGGCTGTAGTTTGCACCTTTGGCACGCAGGACTTAGCATCTAGAGACAC TGGCTCTTAAGAGATTTGACGACAGTATCTGGTCTGAGTGAAAGTGTCTCGGGCCAGATT CTCAGGTTTTCATACAGAATAGTGGGTGTCGCGATTTGGTTAAGGGCCCAGGAACTAGTC TCAGAGTTCAGATCCCGCCGATGGTTCCCCCACGCCGGGGTTGCTGAGGACGCCAAGGTC TCTCCCCCAGGGCCATGGCCGACTCGACGTTGCTGGTGCCGGAGCTAAACGAAGCAGAGA CGATGGGCACGGAGACGACGCCTTTCGAGGAGCTGCTGCTGCAGGCCTCCAAGGAGCTCC AGCAAGCCCAAACAAGCCGACCAGAATCTACACAGATACAACCTCAACCTGGTTTCTGCA TAAAGACCAACTCATCTGAAGGCAAGGTTTTCATCAACATCTGTCACTCTCCCTCCATCC CTCCTCCGGCTGACTTGACTGAGGACGAGCTGCTTCAAATGCTGGAGGAGGACCAAGCCG GGTTCCGCATCCCCATGAGTCTGGGAGAGCCGCATGCCGAACTGGATGCAAAAGGCCAGG GTTGTACCGCCTACGACGTAGCTGTCAACAGCGACTTCTACCGGAGGATGCAGAACAGCG ATTTCTTGAGAGAGCTGGTGATCACCATCGCCAGGGAGGGCCTTGAGGACAAATACAGCC TGCGACTGAATCCAGAGTGGCGCGTTTTGAAGAACAGACCTTTCCTGGGTGCCATCTCCC AGCAAAACATCCGCTCCCAGCAGCGTCCTCGGATCCAGGAGCTGGGGAACCTGTACACAC CCGACTCCCCTACACCTGAGGACCGCCCCGAGAAGCCTCATCTGAACCTTTGGCTGGAGG CCCCTGACCTCCTCTTAGCGGAAATCGACCTCCCCAGACTGGATGGAGCTCTTGGGCTGT CGCTGGAGATTGGGGAGAATCGCCTGGTGATGACGGGCCCCCAGCAGCTGTACCATCTGG ATGCCTACATCCCCCTGCGGATCAACGGTGATGAGAGCAAGGCAGCCTTCCATCGGAAGA GAAAGCAATTGATGGTGGCGATGCCTCTTCTGTAGCCCCTTCTTGACCGGGTGTCTCCCT GTGCTTCTGTGTGAAGAGGGGAGGCTGGTGGCTTCCCTAAACCTGAAATAAAAGATTTTT GCCTTTAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 104-212, + strand, RNAz p=0.734317 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 104-212, + strand, RNAz p=0.734317 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_017916, + |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 25-405, gnl|bosTau2|chr18 (48595780-48595411) | |
| 25-405, gnl|Hg17|chr19 (54646938-54646553) | |
| 467-651, gnl|bosTau2|chr18 (48593878-48593694) | |
| 467-651, gnl|canFam2|chr1 (109935832-109935636) | |
| 467-651, gnl|dasNov1|scaffold_223746 (4039-3843) | |
| 467-651, gnl|echTel1|scaffold_319458 (38121-38322) | |
| 467-651, gnl|hg17|chr19 (54644538-54644734) | |
| 467-651, gnl|Hg17|chr19 (54644728-54644544) | |
| 467-651, gnl|loxAfr1|scaffold_140746 (594-398) | |
| 467-651, gnl|mm7|chr7 (41333518-41333323) | |
| 467-651, gnl|Mm7|chr7 (41333326-41333510) | |
| 467-651, gnl|monDom2|scaffold_105 (4146774-4146575) | |
| 467-651, gnl|oryCun1|scaffold_140452 (3851-4050) | |
| 467-651, gnl|panTro1|chr20 (52006283-52006479) | |
| 467-651, gnl|rheMac2|chr19 (55706258-55706454) | |
| 467-651, gnl|rn3|chr1 (95712101-95711906) | |
| 793-921, gnl|bosTau2|chr18 (48591409-48591281) | |
| 793-921, gnl|canFam2|chr1 (109937882-109937560) | |
| 793-921, gnl|echTel1|scaffold_319458 (36466-36805) | |
| 793-921, gnl|hg17|chr19 (54642191-54642543) | |
| 793-921, gnl|Hg17|chr19 (54642539-54642411) | |
| 793-921, gnl|mm7|chr7 (41334962-41334715) | |
| 793-921, gnl|Mm7|chr7 (41334715-41334843) | |
| 793-921, gnl|monDom2|scaffold_105 (4147809-4147485) | |
| 793-921, gnl|oryCun1|scaffold_140452 (2565-2860) | |
| 793-921, gnl|panTro1|chr20 (52003939-52004291) | |
| 793-921, gnl|rheMac2|chr19 (55703915-55704261) | |
| 793-921, gnl|rn3|chr1 (95713520-95713285) | |
| 1001-1145, gnl|bosTau2|chr18 (48590428-48590284) | |
| 1001-1145, gnl|canFam2|chr1 (109938706-109938468) | |
| 1001-1145, gnl|hg17|chr19 (54641607-54641837) | |
| 1001-1145, gnl|Hg17|chr19 (54641764-54641620) | |
| 1001-1145, gnl|loxAfr1|scaffold_140746 (4467-4238) | |
| 1001-1145, gnl|mm7|chr7 (41335567-41335323) | |
| 1001-1145, gnl|Mm7|chr7 (41335408-41335552) | |
| 1001-1145, gnl|monDom2|scaffold_105 (4148596-4148398) | |
| 1001-1145, gnl|oryCun1|scaffold_140452 (1761-1975) | |
| 1001-1145, gnl|panTro1|chr20 (52003355-52003585) | |
| 1001-1145, gnl|rheMac2|chr19 (55703330-55703560) | |
| 1001-1145, gnl|rn3|chr1 (95714126-95713885) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-405, gnl|bosTau2|chr18 (48595780-48595411) | |
| 25-405, gnl|Hg17|chr19 (54646938-54646553) | |
| 467-651, gnl|bosTau2|chr18 (48593878-48593694) | |
| 467-651, gnl|canFam2|chr1 (109935832-109935636) | |
| 467-651, gnl|dasNov1|scaffold_223746 (4039-3843) | |
| 467-651, gnl|echTel1|scaffold_319458 (38121-38322) | |
| 467-651, gnl|hg17|chr19 (54644538-54644734) | |
| 467-651, gnl|Hg17|chr19 (54644728-54644544) | |
| 467-651, gnl|loxAfr1|scaffold_140746 (594-398) | |
| 467-651, gnl|mm7|chr7 (41333518-41333323) | |
| 467-651, gnl|Mm7|chr7 (41333326-41333510) | |
| 467-651, gnl|monDom2|scaffold_105 (4146774-4146575) | |
| 467-651, gnl|oryCun1|scaffold_140452 (3851-4050) | |
| 467-651, gnl|panTro1|chr20 (52006283-52006479) | |
| 467-651, gnl|rheMac2|chr19 (55706258-55706454) | |
| 467-651, gnl|rn3|chr1 (95712101-95711906) | |
| 793-921, gnl|bosTau2|chr18 (48591409-48591281) | |
| 793-921, gnl|canFam2|chr1 (109937882-109937560) | |
| 793-921, gnl|echTel1|scaffold_319458 (36466-36805) | |
| 793-921, gnl|hg17|chr19 (54642191-54642543) | |
| 793-921, gnl|Hg17|chr19 (54642539-54642411) | |
| 793-921, gnl|mm7|chr7 (41334962-41334715) | |
| 793-921, gnl|Mm7|chr7 (41334715-41334843) | |
| 793-921, gnl|monDom2|scaffold_105 (4147809-4147485) | |
| 793-921, gnl|oryCun1|scaffold_140452 (2565-2860) | |
| 793-921, gnl|panTro1|chr20 (52003939-52004291) | |
| 793-921, gnl|rheMac2|chr19 (55703915-55704261) | |
| 793-921, gnl|rn3|chr1 (95713520-95713285) | |
| 1001-1145, gnl|bosTau2|chr18 (48590428-48590284) | |
| 1001-1145, gnl|canFam2|chr1 (109938706-109938468) | |
| 1001-1145, gnl|hg17|chr19 (54641607-54641837) | |
| 1001-1145, gnl|Hg17|chr19 (54641764-54641620) | |
| 1001-1145, gnl|loxAfr1|scaffold_140746 (4467-4238) | |
| 1001-1145, gnl|mm7|chr7 (41335567-41335323) | |
| 1001-1145, gnl|Mm7|chr7 (41335408-41335552) | |
| 1001-1145, gnl|monDom2|scaffold_105 (4148596-4148398) | |
| 1001-1145, gnl|oryCun1|scaffold_140452 (1761-1975) | |
| 1001-1145, gnl|panTro1|chr20 (52003355-52003585) | |
| 1001-1145, gnl|rheMac2|chr19 (55703330-55703560) | |
| 1001-1145, gnl|rn3|chr1 (95714126-95713885) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nlu (0.383362) | |
| fce (0.271592) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nlu (0.383362) | |
| fce (0.271592) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lin (0.145603) | |
| hlv (0.139256) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |