Non-Coding RNA Search

Ss1.1-LyN1-MLN01G040037.5

Sequence:


               
               AATAAACAAAAATTGTAATTTTATATTCCTATCCATATTGCATTCTCCCTAAACAAACTC
TAAGCTTTCTCCCATGGCAAAATCTCAGAAATTCACAATGTAATAAAACTCCCAAAGGAA
AACAAACAAAAATTTGACCCAACTCACACTTATTGGTAATCTGAGCAAGCCGGGCCTTCT
CGGAGGAGAACGTCTCGTCTAAGTCAAACAGCTCCAGTGGAGGAGGTGGTAGTTCCCTGA
AACTTGGCGGGAAAACCTAAGAGGCAGTAAGGTCTTTCATGAAAGAGCACAACCAAAGCC
ATAACTGACAGTGATGCGACGCAGGGAAAAGGAGGAGAGGCCAACTCAGCCCTTCCTGGG
AGACCCACCCAGCGCCCCGCACCTCCTTCTGCCCTGACCCATGAGAACACAGCAAGCAAG
ACGACAGCCCACTGTAAGCAACTCAGCAGAACCAGCCCCACTATCCCGAACTGGCCACGC
TGTGCCAGGGCCCATTAACTCGTGCAAGGACACAAGGCTTGGGGCTTATAGGGTTTATTT
GTGTTGAATATTTGATTGTACAAGTTGTTTCTCATCTAATCCTGAGTTCTCTAGGGACAG
AAACTGGGGAAACAAATGTAGATTAATGTACCACGTGCTGAACTTGGAGCCAGAATTTGC
AGGTATGAACCAGTGGCATTCTCATAAATGTTGAACTATCATTCACAACAAAAGGCCTGA
GGAGTTCCACTGTGACTCAGCAGTAATGGACCCAACTAGTAACTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAACAAAAATTGTAATTTTATATTCCTATCCATATTGCATTCTCCCTAAACAAACTC
TAAGCTTTCTCCCATGGCAAAATCTCAGAAATTCACAATGTAATAAAACTCCCAAAGGAA
AACAAACAAAAATTTGACCCAACTCACACTTATTGGTAATCTGAGCAAGCCGGGCCTTCT
CGGAGGAGAACGTCTCGTCTAAGTCAAACAGCTCCAGTGGAGGAGGTGGTAGTTCCCTGA
AACTTGGCGGGAAAACCTAAGAGGCAGTAAGGTCTTTCATGAAAGAGCACAACCAAAGCC
ATAACTGACAGTGATGCGACGCAGGGAAAAGGAGGAGAGGCCAACTCAGCCCTTCCTGGG
AGACCCACCCAGCGCCCCGCACCTCCTTCTGCCCTGACCCATGAGAACACAGCAAGCAAG
ACGACAGCCCACTGTAAGCAACTCAGCAGAACCAGCCCCACTATCCCGAACTGGCCACGC
TGTGCCAGGGCCCATTAACTCGTGCAAGGACACAAGGCTTGGGGCTTATAGGGTTTATTT
GTGTTGAATATTTGATTGTACAAGTTGTTTCTCATCTAATCCTGAGTTCTCTAGGGACAG
AAACTGGGGAAACAAATGTAGATTAATGTACCACGTGCTGAACTTGGAGCCAGAATTTGC
AGGTATGAACCAGTGGCATTCTCATAAATGTTGAACTATCATTCACAACAAAAGGCCTGA
GGAGTTCCACTGTGACTCAGCAGTAATGGACCCAACTAGTAACTGTGA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-336, gnl|bosTau2|chr13 (52709114-52709447)
               

               
               1-336, gnl|Hg17|chr20 (41699763-41698994)
               

               
               1-336, gnl|Mm7|chr2 (162783829-162783485)
               


               
               373-731, gnl|bosTau2|chr13 (52709453-52709796)
               

               
               373-731, gnl|Hg17|chr20 (41698988-41698610)
               

               
               373-731, gnl|Mm7|chr2 (162783479-162783021)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr13 (52709114-52709447)
               

               
               1-336, gnl|Hg17|chr20 (41699763-41698994)
               

               
               1-336, gnl|Mm7|chr2 (162783829-162783485)
               


               
               373-731, gnl|bosTau2|chr13 (52709453-52709796)
               

               
               373-731, gnl|Hg17|chr20 (41698988-41698610)
               

               
               373-731, gnl|Mm7|chr2 (162783479-162783021)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-336, gnl\|bosTau2\|chr13 (52709114-52709447)
	1-336, gnl\|Hg17\|chr20 (41699763-41698994)
	1-336, gnl\|Mm7\|chr2 (162783829-162783485)

	373-731, gnl\|bosTau2\|chr13 (52709453-52709796)
	373-731, gnl\|Hg17\|chr20 (41698988-41698610)
	373-731, gnl\|Mm7\|chr2 (162783479-162783021)