Non-Coding RNA Search

Ss1.1-LyN1-MLN01G040051.5

Sequence:


               
               AATGCCCACCCACCAAATCTTGTCCTAGTTTTCTCTATATATGACTTTGCTCAAATTCTA
GAAAACTTATCTTTGCTTGTACTTGGTTTGCAAAATGTGTTATTAAAACCTTTCTTTAGC
AAATTCCCAAGGTGTAAGTTCAAATGTCCAGGTTCTTCTTCTTTTTTCCCACCGTGGGTT
TTGGCACAGTATGCAGTTTTATAACATGTACCAGAGTCTCCGATTTATTCAAAGACTGTG
AATTCATACCCTGAAATTTGGTTCTGTTTGAAGCTGGGGAAGAAATAGGGTATGGACACC
GCTTTGTAAAATCATGGTGATCCTGGTCTTTCTGGTTTGTTTGTTAATACCATTCAGTTC
CTTGTTTCCACTTTACAGAATCTCTGGAATGTTATTCTTTAACTCCTGGGGAATTGAGGA
TCTTTGCAAAGACTCCATCTGGAGGTGTATTTAATATCATATTTAAAATATGACTAAATC
GTGCTTAGCTCTGGTCTTATTAGGTGCATGCTATATATCTCCATCCAAGAATAATACTGT
AAGAGCTGTGAAGTGAAGACTTCAAGGAAAACCTACAGCAAAACAGTCTCCTGAATTGGG
CTTGTGGTCTCTCAGGCGAGGCCAGTTGCAAACTGAAGGCTTGAACTTGTCGCCAGTAAG
GCAGTGTTATTGGTAAGAGGGTTTTCAGTCTGTCTTGGTGAAACAGACACCTCCGTATTC
CCACAGAGAAGGCAGGCAGTTTGTTTTCAAGACCCAGAAAAGCAAAACATCTGCTCGTGG
TGGGAACGTCAGCAAATGTAGTGGACTTGGTGGTCACGTCCATTGCCATGTTTCAACTCT
GTCCAGACCGTGCTGGTGTGATGTGCACTTCGGCAAAAGCTTAGGAAAATGCCTTATCCA
TTTTTGTGAGGGGGAGGAAAAAAAACCCACCCAGGAGCTGCTTTCATGGAACATTGCAAG
CCTTGTTGAGGTGTACATCTTTCATACAAAAACCCCTAGATGAGCGGCAATGGAAAAATA
CGGGTTTGTGATCATTTTGAATGATGCGTGATTACCTTGATGAGCGCTATAGTTACTAAG
CAGATAAGCACGTCTTTGTTTGAAAAGGGAACTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGCCCACCCACCAAATCTTGTCCTAGTTTTCTCTATATATGACTTTGCTCAAATTCTA
GAAAACTTATCTTTGCTTGTACTTGGTTTGCAAAATGTGTTATTAAAACCTTTCTTTAGC
AAATTCCCAAGGTGTAAGTTCAAATGTCCAGGTTCTTCTTCTTTTTTCCCACCGTGGGTT
TTGGCACAGTATGCAGTTTTATAACATGTACCAGAGTCTCCGATTTATTCAAAGACTGTG
AATTCATACCCTGAAATTTGGTTCTGTTTGAAGCTGGGGAAGAAATAGGGTATGGACACC
GCTTTGTAAAATCATGGTGATCCTGGTCTTTCTGGTTTGTTTGTTAATACCATTCAGTTC
CTTGTTTCCACTTTACAGAATCTCTGGAATGTTATTCTTTAACTCCTGGGGAATTGAGGA
TCTTTGCAAAGACTCCATCTGGAGGTGTATTTAATATCATATTTAAAATATGACTAAATC
GTGCTTAGCTCTGGTCTTATTAGGTGCATGCTATATATCTCCATCCAAGAATAATACTGT
AAGAGCTGTGAAGTGAAGACTTCAAGGAAAACCTACAGCAAAACAGTCTCCTGAATTGGG
CTTGTGGTCTCTCAGGCGAGGCCAGTTGCAAACTGAAGGCTTGAACTTGTCGCCAGTAAG
GCAGTGTTATTGGTAAGAGGGTTTTCAGTCTGTCTTGGTGAAACAGACACCTCCGTATTC
CCACAGAGAAGGCAGGCAGTTTGTTTTCAAGACCCAGAAAAGCAAAACATCTGCTCGTGG
TGGGAACGTCAGCAAATGTAGTGGACTTGGTGGTCACGTCCATTGCCATGTTTCAACTCT
GTCCAGACCGTGCTGGTGTGATGTGCACTTCGGCAAAAGCTTAGGAAAATGCCTTATCCA
TTTTTGTGAGGGGGAGGAAAAAAAACCCACCCAGGAGCTGCTTTCATGGAACATTGCAAG
CCTTGTTGAGGTGTACATCTTTCATACAAAAACCCCTAGATGAGCGGCAATGGAAAAATA
CGGGTTTGTGATCATTTTGAATGATGCGTGATTACCTTGATGAGCGCTATAGTTACTAAG
CAGATAAGCACGTCTTTGTTTGAAAAGGGAACTTGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1116, gnl|bosTau2|chr2 (60028097-60029205)
               

               
               1-1116, gnl|Hg17|chr8 (119147221-119144636)
               

               
               1-1116, gnl|Mm7|chr15 (53360403-53359230)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr2 (60028097-60029205)
               

               
               1-1116, gnl|Hg17|chr8 (119147221-119144636)
               

               
               1-1116, gnl|Mm7|chr15 (53360403-53359230)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

	1-1116, gnl\|bosTau2\|chr2 (60028097-60029205)
	1-1116, gnl\|Hg17\|chr8 (119147221-119144636)
	1-1116, gnl\|Mm7\|chr15 (53360403-53359230)