Non-Coding RNA Search

Ss1.1-LyN1-MLN01G050005.5

Sequence:


               
               GGCGGAAGTTCCGGGTAGTGGGCACCGCCCCCGCGGGCCATTGGCTGGTACCCGCCCCCG
CGCTAGTGACTGACACTCGCGGGGGCGCAGCGCAGCCACTGCTTCCGCCGGGCCATGGGG
CCGCGCGTGCTGCTGCCGCGGCTTCTACTGCTGCTGCCGCCGGCGCTATTGCTGCCGGCG
CTGCTGTGCGGAGCCGAGGAGGCCGCACCCCCATCGCTGCGCTCTACGCGCTCTACGCAG
GCCGCACTGTCGCCGCCGCCCGCCGTGACGAACGGGAGTCAGCCGGGCGCGCCGCACAAC
AGCACACACCCGGGGCCGCTGGGCTCGTCAGGCTCGCCGCTGGTGCGCTCCATCTACGTG
GTCACGGGCCTCATCTGCCTGGCCTTGCTCTACTTCCTCATCCGGGCATTCAGGTTGAAA
AAGCCACAGCGGAGGCGGTACGGGCTCCTGGCCAACAGCGAGGACCCCACTGAGACAGCC
TCGTTGGATAGCGATGAGGAGACGGTCTTTGAAACAAAGAATCTGAGATGATATTCATGT
TGGGAAGGCGGCATTTTCAGCGGCCCTGGGGGACAGACAGGAGACAGGGCCCACCGATTC
TCCTGCTGGACCAGAGAGCTTGTGTGGGACCTACCTGGCCACTTGAAGCCACCTCAGCCC
TCCAGATGGACAAGACTGCCCAGGATACTGGCTGGAAGTCAGAGGGGCCCTGGCAGCCCC
ACCCAGGACTCTGAGGTCCCCTGGCCACATTGTGACTTGTGTCAGTTGCTCTTCCTGGTG
GGGATGTGGCAGCCCCGAGTTGAGGCCTGGTAGGTGGGAGGGCTAAGGGGTCTGTCTGGA
AGTACCTAACCCCTGGGCTGGGGACAATAAAGGCAGCAGTGGTTTTGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGAAGTTCCGGGTAGTGGGCACCGCCCCCGCGGGCCATTGGCTGGTACCCGCCCCCG
CGCTAGTGACTGACACTCGCGGGGGCGCAGCGCAGCCACTGCTTCCGCCGGGCCATGGGG
CCGCGCGTGCTGCTGCCGCGGCTTCTACTGCTGCTGCCGCCGGCGCTATTGCTGCCGGCG
CTGCTGTGCGGAGCCGAGGAGGCCGCACCCCCATCGCTGCGCTCTACGCGCTCTACGCAG
GCCGCACTGTCGCCGCCGCCCGCCGTGACGAACGGGAGTCAGCCGGGCGCGCCGCACAAC
AGCACACACCCGGGGCCGCTGGGCTCGTCAGGCTCGCCGCTGGTGCGCTCCATCTACGTG
GTCACGGGCCTCATCTGCCTGGCCTTGCTCTACTTCCTCATCCGGGCATTCAGGTTGAAA
AAGCCACAGCGGAGGCGGTACGGGCTCCTGGCCAACAGCGAGGACCCCACTGAGACAGCC
TCGTTGGATAGCGATGAGGAGACGGTCTTTGAAACAAAGAATCTGAGATGATATTCATGT
TGGGAAGGCGGCATTTTCAGCGGCCCTGGGGGACAGACAGGAGACAGGGCCCACCGATTC
TCCTGCTGGACCAGAGAGCTTGTGTGGGACCTACCTGGCCACTTGAAGCCACCTCAGCCC
TCCAGATGGACAAGACTGCCCAGGATACTGGCTGGAAGTCAGAGGGGCCCTGGCAGCCCC
ACCCAGGACTCTGAGGTCCCCTGGCCACATTGTGACTTGTGTCAGTTGCTCTTCCTGGTG
GGGATGTGGCAGCCCCGAGTTGAGGCCTGGTAGGTGGGAGGGCTAAGGGGTCTGTCTGGA
AGTACCTAACCCCTGGGCTGGGGACAATAAAGGCAGCAGTGGTTTTGCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62651754|ref|XP_576184.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62651754|ref|XP_576184.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               768-887, - strand, RNAz p=0.822432

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               768-887, - strand, RNAz p=0.822432

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               9-415, gnl|bosTau2|chr7 (29176720-29176336)
               

               
               9-415, gnl|Hg17|chr19 (1226451-1226831)
               


               
               543-887, gnl|bosTau2|chr7 (29174121-29173767)
               

               
               543-887, gnl|Hg17|chr19 (1229787-1230225)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-415, gnl|bosTau2|chr7 (29176720-29176336)
               

               
               9-415, gnl|Hg17|chr19 (1226451-1226831)
               


               
               543-887, gnl|bosTau2|chr7 (29174121-29173767)
               

               
               543-887, gnl|Hg17|chr19 (1229787-1230225)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cov (0.264306)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               med (0.116252)

	9-415, gnl\|bosTau2\|chr7 (29176720-29176336)
	9-415, gnl\|Hg17\|chr19 (1226451-1226831)

	543-887, gnl\|bosTau2\|chr7 (29174121-29173767)
	543-887, gnl\|Hg17\|chr19 (1229787-1230225)

	cov (0.264306)
	col (0.195008)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	pla (0.133672)
	med (0.116252)