Ss1.1-LyN1-MLN01G050043.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAATCAGGTTGCTCACTTGGAGCTGGGCCAGGTGGAGTGTCAGTTGAAAACCACGCT GGAAGTGCTCCGGGAGCGCAGCCTGCAGTGCGAGGACCTCAAGGACACCGTGGAGAACCT GAGGGCTGAACTGGCCAGCATCATAGCAGAGAAGCAGCAGCAAGACCTGGAGAAGGCGTG CCAGTGTTCCCAGGAGCTCGGGGTGCTGACTGAGCAACTCCAGAGCCTGACCCTCTTCCT ACAGACAAAATTAAAGGAGACGGCTGAACCAGAGACCCTCCCAATAAGCACAGCCTATGC TCTGTCCCAGGAGCACCCTCCACCCGCCGACAGTGCCTTCTTGGGAAGCATCCTGACAGC TGTGGCAGATGAAGAGCCAGAATCAGCTCCTGTGCCCTTGCTTGGAAGTGACAAGAGTGC TTTCACCAGAGTAGCATCAATAGTTTCCCTTCAGCCTACAGAACCCCCAGGCATCGAGAA GAGCCTGGCAGAAATGAGTACTCTGATTCTGGAGCTTCAGAGCCTGTGTTCCCTGTTGCA GGAGTCTAAAGAGGAGGCTGTCAGGACTCTGCAGCGAAAGATATGTGATCTGCAGGCTGA GCTGCAGTCCCAGGAAGAACAGCATCAGGAAGCCCAGAGAGCAAAGGAAGCGGACATAGA GAAGCTGAACCAGGCCTTGTGCTTGCGCTACAAGAATGAAAAGGAGCTCCAGGAAGTGAT ACAGCAGCAGAACAAGAAGATCCTAGAACAGATAGACAAGAGTGGCGAGCTCATAAGGCT TAGAGAAGAGGTGGCCCAGCTCACGCGCTCACTTCGGCGTGCGGAGACAGAGACTGCGGT GCTTCGAGAGACCCTGGCAGGCCAGCTGAACCCCGACTGTCAGCCCATGGCCACTAACTG GATCCAGGAGAAAGTGTGGCTCTCCCAGGAGGTGGACAAGCTGAGGGTGATGTTCCTGGA GATGAAAAATGAGAAGGCGAAACTTACGGTCAAGTTCCAGAGCCATAGAAACATCCTGGA AGAGAATCTGCGGCGCTCTGACAAGGAGTTAAAGAAACTAGATGACATCGTTCAGCATAT TTATCAGACTCTGCTGTCCATCCCAGAGGTTGTGAAGGGCTGCAAGGAGCTACAGGGATT GCTGGAATTTCTGAGCTAAGAAACTGAAAGCTGGAATCTGTTTTACCCCTTTTTACTTGC AACACTCCTTTACCCCAAGACCAGGACCAACTGGCATGGAGCTAGCTCTGTTTAATGCTA TTTAAATGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAATCAGGTTGCTCACTTGGAGCTGGGCCAGGTGGAGTGTCAGTTGAAAACCACGCT GGAAGTGCTCCGGGAGCGCAGCCTGCAGTGCGAGGACCTCAAGGACACCGTGGAGAACCT GAGGGCTGAACTGGCCAGCATCATAGCAGAGAAGCAGCAGCAAGACCTGGAGAAGGCGTG CCAGTGTTCCCAGGAGCTCGGGGTGCTGACTGAGCAACTCCAGAGCCTGACCCTCTTCCT ACAGACAAAATTAAAGGAGACGGCTGAACCAGAGACCCTCCCAATAAGCACAGCCTATGC TCTGTCCCAGGAGCACCCTCCACCCGCCGACAGTGCCTTCTTGGGAAGCATCCTGACAGC TGTGGCAGATGAAGAGCCAGAATCAGCTCCTGTGCCCTTGCTTGGAAGTGACAAGAGTGC TTTCACCAGAGTAGCATCAATAGTTTCCCTTCAGCCTACAGAACCCCCAGGCATCGAGAA GAGCCTGGCAGAAATGAGTACTCTGATTCTGGAGCTTCAGAGCCTGTGTTCCCTGTTGCA GGAGTCTAAAGAGGAGGCTGTCAGGACTCTGCAGCGAAAGATATGTGATCTGCAGGCTGA GCTGCAGTCCCAGGAAGAACAGCATCAGGAAGCCCAGAGAGCAAAGGAAGCGGACATAGA GAAGCTGAACCAGGCCTTGTGCTTGCGCTACAAGAATGAAAAGGAGCTCCAGGAAGTGAT ACAGCAGCAGAACAAGAAGATCCTAGAACAGATAGACAAGAGTGGCGAGCTCATAAGGCT TAGAGAAGAGGTGGCCCAGCTCACGCGCTCACTTCGGCGTGCGGAGACAGAGACTGCGGT GCTTCGAGAGACCCTGGCAGGCCAGCTGAACCCCGACTGTCAGCCCATGGCCACTAACTG GATCCAGGAGAAAGTGTGGCTCTCCCAGGAGGTGGACAAGCTGAGGGTGATGTTCCTGGA GATGAAAAATGAGAAGGCGAAACTTACGGTCAAGTTCCAGAGCCATAGAAACATCCTGGA AGAGAATCTGCGGCGCTCTGACAAGGAGTTAAAGAAACTAGATGACATCGTTCAGCATAT TTATCAGACTCTGCTGTCCATCCCAGAGGTTGTGAAGGGCTGCAAGGAGCTACAGGGATT GCTGGAATTTCTGAGCTAAGAAACTGAAAGCTGGAATCTGTTTTACCCCTTTTTACTTGC AACACTCCTTTACCCCAAGACCAGGACCAACTGGCATGGAGCTAGCTCTGTTTAATGCTA TTTAAATGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 2-122, - strand, RNAz p=0.940075 | |
| 2-96, - strand, RNAz p=0.947269 | |
| 583-719, + strand, RNAz p=0.930505 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-122, - strand, RNAz p=0.940075 | |
| 2-96, - strand, RNAz p=0.947269 | |
| 583-719, + strand, RNAz p=0.930505 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 2-122, gnl|bosTau2|chr19 (13582076-13581956) | |
| 2-122, gnl|canFam2|chr9 (46116033-46116289) | |
| 2-122, gnl|dasNov1|scaffold_67388 (1443-1679) | |
| 2-122, gnl|echTel1|scaffold_317923 (12768-12986) | |
| 2-122, gnl|galGal2|chr19 (5393625-5393821) | |
| 2-122, gnl|hg17|chr17 (23934968-23935170) | |
| 2-122, gnl|Hg17|chr17 (23935119-23934999) | |
| 2-122, gnl|mm7|chr11 (78397234-78396995) | |
| 2-122, gnl|Mm7|chr11 (78397096-78397216) | |
| 2-122, gnl|monDom2|scaffold_44 (14503173-14503385) | |
| 2-122, gnl|oryCun1|scaffold_190404 (68252-68027) | |
| 2-122, gnl|panTro1|chr19_random (12747580-12747782) | |
| 2-122, gnl|rheMac2|chr16 (23782519-23782721) | |
| 2-122, gnl|rn3|chr10 (64333775-64334047) | |
| 262-374, gnl|bosTau2|chr19 (13578644-13578532) | |
| 262-374, gnl|canFam2|chr9 (46111481-46111673) | |
| 262-374, gnl|dasNov1|scaffold_9430 (3834-3642) | |
| 262-374, gnl|echTel1|scaffold_317923 (10293-10483) | |
| 262-374, gnl|hg17|chr17 (23931095-23931287) | |
| 262-374, gnl|Hg17|chr17 (23931266-23931154) | |
| 262-374, gnl|mm7|chr11 (78401208-78401022) | |
| 262-374, gnl|Mm7|chr11 (78401041-78401153) | |
| 262-374, gnl|monDom2|scaffold_44 (14502000-14502183) | |
| 262-374, gnl|oryCun1|scaffold_190404 (72995-72828) | |
| 262-374, gnl|panTro1|chr19_random (12743705-12743897) | |
| 262-374, gnl|rheMac2|chr16 (23775644-23775836) | |
| 262-374, gnl|rn3|chr10 (64329353-64329536) | |
| 583-719, gnl|bosTau2|chr19 (13577775-13577641) | |
| 583-719, gnl|canFam2|chr9 (46110384-46111139) | |
| 583-719, gnl|dasNov1|scaffold_9430 (4941-4195) | |
| 583-719, gnl|echTel1|scaffold_317923 (8993-9743) | |
| 583-719, gnl|hg17|chr17 (23930000-23930745) | |
| 583-719, gnl|Hg17|chr17 (23930397-23930263) | |
| 583-719, gnl|loxAfr1|scaffold_66389 (4946-5699) | |
| 583-719, gnl|mm7|chr11 (78402530-78401800) | |
| 583-719, gnl|Mm7|chr11 (78402136-78402270) | |
| 583-719, gnl|monDom2|scaffold_44 (14500740-14501605) | |
| 583-719, gnl|oryCun1|scaffold_190404 (74047-73315) | |
| 583-719, gnl|panTro1|chr19_random (12742610-12743355) | |
| 583-719, gnl|rheMac2|chr16 (23774545-23775293) | |
| 583-719, gnl|rn3|chr10 (64328240-64328959) | |
| 776-934, gnl|bosTau2|chr19 (13577031-13576873) | |
| 776-934, gnl|canFam2|chr9 (46109408-46109953) | |
| 776-934, gnl|dasNov1|scaffold_9430 (5815-5233) | |
| 776-934, gnl|hg17|chr17 (23929180-23929714) | |
| 776-934, gnl|Hg17|chr17 (23929673-23929515) | |
| 776-934, gnl|loxAfr1|scaffold_66389 (4078-4653) | |
| 776-934, gnl|mm7|chr11 (78403318-78402799) | |
| 776-934, gnl|Mm7|chr11 (78402837-78402995) | |
| 776-934, gnl|monDom2|scaffold_44 (14499865-14500460) | |
| 776-934, gnl|oryCun1|scaffold_190404 (74876-74354) | |
| 776-934, gnl|panTro1|chr19_random (12741790-12742324) | |
| 776-934, gnl|rheMac2|chr16 (23773727-23774261) | |
| 776-934, gnl|rn3|chr10 (64327434-64327945) | |
| 1071-1254, gnl|bosTau2|chr19 (13576302-13576118) | |
| 1071-1254, gnl|Hg17|chr17 (23928933-23928742) | |
| 1071-1254, gnl|Mm7|chr11 (78403687-78404006) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-122, gnl|bosTau2|chr19 (13582076-13581956) | |
| 2-122, gnl|canFam2|chr9 (46116033-46116289) | |
| 2-122, gnl|dasNov1|scaffold_67388 (1443-1679) | |
| 2-122, gnl|echTel1|scaffold_317923 (12768-12986) | |
| 2-122, gnl|galGal2|chr19 (5393625-5393821) | |
| 2-122, gnl|hg17|chr17 (23934968-23935170) | |
| 2-122, gnl|Hg17|chr17 (23935119-23934999) | |
| 2-122, gnl|mm7|chr11 (78397234-78396995) | |
| 2-122, gnl|Mm7|chr11 (78397096-78397216) | |
| 2-122, gnl|monDom2|scaffold_44 (14503173-14503385) | |
| 2-122, gnl|oryCun1|scaffold_190404 (68252-68027) | |
| 2-122, gnl|panTro1|chr19_random (12747580-12747782) | |
| 2-122, gnl|rheMac2|chr16 (23782519-23782721) | |
| 2-122, gnl|rn3|chr10 (64333775-64334047) | |
| 262-374, gnl|bosTau2|chr19 (13578644-13578532) | |
| 262-374, gnl|canFam2|chr9 (46111481-46111673) | |
| 262-374, gnl|dasNov1|scaffold_9430 (3834-3642) | |
| 262-374, gnl|echTel1|scaffold_317923 (10293-10483) | |
| 262-374, gnl|hg17|chr17 (23931095-23931287) | |
| 262-374, gnl|Hg17|chr17 (23931266-23931154) | |
| 262-374, gnl|mm7|chr11 (78401208-78401022) | |
| 262-374, gnl|Mm7|chr11 (78401041-78401153) | |
| 262-374, gnl|monDom2|scaffold_44 (14502000-14502183) | |
| 262-374, gnl|oryCun1|scaffold_190404 (72995-72828) | |
| 262-374, gnl|panTro1|chr19_random (12743705-12743897) | |
| 262-374, gnl|rheMac2|chr16 (23775644-23775836) | |
| 262-374, gnl|rn3|chr10 (64329353-64329536) | |
| 583-719, gnl|bosTau2|chr19 (13577775-13577641) | |
| 583-719, gnl|canFam2|chr9 (46110384-46111139) | |
| 583-719, gnl|dasNov1|scaffold_9430 (4941-4195) | |
| 583-719, gnl|echTel1|scaffold_317923 (8993-9743) | |
| 583-719, gnl|hg17|chr17 (23930000-23930745) | |
| 583-719, gnl|Hg17|chr17 (23930397-23930263) | |
| 583-719, gnl|loxAfr1|scaffold_66389 (4946-5699) | |
| 583-719, gnl|mm7|chr11 (78402530-78401800) | |
| 583-719, gnl|Mm7|chr11 (78402136-78402270) | |
| 583-719, gnl|monDom2|scaffold_44 (14500740-14501605) | |
| 583-719, gnl|oryCun1|scaffold_190404 (74047-73315) | |
| 583-719, gnl|panTro1|chr19_random (12742610-12743355) | |
| 583-719, gnl|rheMac2|chr16 (23774545-23775293) | |
| 583-719, gnl|rn3|chr10 (64328240-64328959) | |
| 776-934, gnl|bosTau2|chr19 (13577031-13576873) | |
| 776-934, gnl|canFam2|chr9 (46109408-46109953) | |
| 776-934, gnl|dasNov1|scaffold_9430 (5815-5233) | |
| 776-934, gnl|hg17|chr17 (23929180-23929714) | |
| 776-934, gnl|Hg17|chr17 (23929673-23929515) | |
| 776-934, gnl|loxAfr1|scaffold_66389 (4078-4653) | |
| 776-934, gnl|mm7|chr11 (78403318-78402799) | |
| 776-934, gnl|Mm7|chr11 (78402837-78402995) | |
| 776-934, gnl|monDom2|scaffold_44 (14499865-14500460) | |
| 776-934, gnl|oryCun1|scaffold_190404 (74876-74354) | |
| 776-934, gnl|panTro1|chr19_random (12741790-12742324) | |
| 776-934, gnl|rheMac2|chr16 (23773727-23774261) | |
| 776-934, gnl|rn3|chr10 (64327434-64327945) | |
| 1071-1254, gnl|bosTau2|chr19 (13576302-13576118) | |
| 1071-1254, gnl|Hg17|chr17 (23928933-23928742) | |
| 1071-1254, gnl|Mm7|chr11 (78403687-78404006) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cte (0.29274) | |
| ill (0.175593) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| eru (0.120048) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| ill (0.175593) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| eru (0.120048) |