Ss1.1-LyN1-MLN01G050070.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGGTCCTGTTCTTCAGCACTTGCCAAAGCAGTTCCTCACAACCTGTGGTACCAGGGCA TCTTGGGTGTGAGACAATGGAAGAGTTGGATGCCTTGTTGGAGGAGCTGGAACACTCCAC CCTTCAGGAGAGTGATGAATACGACAGCCCAGCCTCTCTTTCCCTGGATGGGCATTCCAA AAAGGAGAGTGACCTTGCTGAGACTTCAAAGGTCCCTTCTGCTCAGGATGACACAAGTTC CTTTTCGGTGCAGCTCGTGTATACCACCAACATCCAGGAGCCCAGAGTCTACAGTGAGGT CCAAGAGCCAAAGGAGTCACCACCACCTCCTAAAACCTCAGCAGCGGCTCAGCTGGATGA GCTCATGGCCCACCTTTGTGAAATGCAGATCCAGTGTACAGTGAAAGCAGATGCCAGCAC GAAACACTTACCAGAAAAGCAGGATCCCAAGACCTCCCTGGACTCAATGTTGGGGGGTTT GGAGCAGGAACTGCAGGACCTCGGAATTGCCACAGTGCCCAAGGGCCATTGTGCTTCCTG CCAGAAACCGATCGCTGGCAAGATGATCCATGCTCTAGGGCAAGCGTGGCATCCAGAGCA CTTCGTCTGCGCTCACTGCAAAGAAGAGATTGGCTCCAGTCCCTTCTTTGAGCGGACTGG CCTGGCCTACTGCTCCAAGGACTACCACCACCTTTTTTCTCCACGCTGTGCTTACTGTGC TGCTCCTATTCTGGATAAAGTACTGACGGCCATGGACCAAACCTGGCATCCTGAGCACTT CTTCTGCGCTCACTGTGGAGAGGTGTTTGGTGCAGAAGGTTTTCATGAGAAGGACAAGAA GCCATATTGCCGGAAGGATTTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGGTCCTGTTCTTCAGCACTTGCCAAAGCAGTTCCTCACAACCTGTGGTACCAGGGCA TCTTGGGTGTGAGACAATGGAAGAGTTGGATGCCTTGTTGGAGGAGCTGGAACACTCCAC CCTTCAGGAGAGTGATGAATACGACAGCCCAGCCTCTCTTTCCCTGGATGGGCATTCCAA AAAGGAGAGTGACCTTGCTGAGACTTCAAAGGTCCCTTCTGCTCAGGATGACACAAGTTC CTTTTCGGTGCAGCTCGTGTATACCACCAACATCCAGGAGCCCAGAGTCTACAGTGAGGT CCAAGAGCCAAAGGAGTCACCACCACCTCCTAAAACCTCAGCAGCGGCTCAGCTGGATGA GCTCATGGCCCACCTTTGTGAAATGCAGATCCAGTGTACAGTGAAAGCAGATGCCAGCAC GAAACACTTACCAGAAAAGCAGGATCCCAAGACCTCCCTGGACTCAATGTTGGGGGGTTT GGAGCAGGAACTGCAGGACCTCGGAATTGCCACAGTGCCCAAGGGCCATTGTGCTTCCTG CCAGAAACCGATCGCTGGCAAGATGATCCATGCTCTAGGGCAAGCGTGGCATCCAGAGCA CTTCGTCTGCGCTCACTGCAAAGAAGAGATTGGCTCCAGTCCCTTCTTTGAGCGGACTGG CCTGGCCTACTGCTCCAAGGACTACCACCACCTTTTTTCTCCACGCTGTGCTTACTGTGC TGCTCCTATTCTGGATAAAGTACTGACGGCCATGGACCAAACCTGGCATCCTGAGCACTT CTTCTGCGCTCACTGTGGAGAGGTGTTTGGTGCAGAAGGTTTTCATGAGAAGGACAAGAA GCCATATTGCCGGAAGGATTTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 431-550, - strand, RNAz p=0.72685 | |
| 431-547, - strand, RNAz p=0.763639 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 431-550, - strand, RNAz p=0.72685 | |
| 431-547, - strand, RNAz p=0.763639 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 89-249, gnl|bosTau2|chr15 (53232838-53232998) | |
| 89-249, gnl|canFam2|chr18 (40881858-40881631) | |
| 89-249, gnl|echTel1|scaffold_311467 (34564-34776) | |
| 89-249, gnl|hg17|chr11 (58094598-58094818) | |
| 89-249, gnl|Hg17|chr11 (58094763-58094603) | |
| 89-249, gnl|mm7|chr19 (12484196-12483976) | |
| 89-249, gnl|Mm7|chr19 (12484029-12484189) | |
| 89-249, gnl|monDom2|scaffold_33 (22621219-22621420) | |
| 89-249, gnl|panTro1|chr9 (59034117-59034337) | |
| 89-249, gnl|rheMac2|chr14 (14979437-14979217) | |
| 89-249, gnl|rn3|chr1 (216049772-216049552) | |
| 392-565, gnl|bosTau2|chr15 (53252505-53252678) | |
| 392-565, gnl|canFam2|chr18 (40899015-40898875) | |
| 392-565, gnl|danRer3|chr12 (22693618-22693477) | |
| 392-565, gnl|dasNov1|scaffold_182911 (442-302) | |
| 392-565, gnl|echTel1|scaffold_312663 (93881-94018) | |
| 392-565, gnl|fr1|chrUn (58914798-58914909) | |
| 392-565, gnl|galGal2|chr15 (9355944-9355813) | |
| 392-565, gnl|hg17|chr11 (58075079-58075219) | |
| 392-565, gnl|Hg17|chr11 (58075284-58075111) | |
| 392-565, gnl|mm7|chr19 (12504244-12504105) | |
| 392-565, gnl|Mm7|chr19 (12504038-12504211) | |
| 392-565, gnl|monDom2|scaffold_33 (22609916-22610057) | |
| 392-565, gnl|oryCun1|scaffold_160289 (7843-7963) | |
| 392-565, gnl|panTro1|chr9 (59014199-59014339) | |
| 392-565, gnl|rheMac2|chr14 (14998759-14998619) | |
| 392-565, gnl|rn3|chr1 (216070970-216070856) | |
| 392-565, gnl|tetNig1|chrUn_random (43655594-43655702) | |
| 392-565, gnl|xenTro1|scaffold_9 (4682911-4683020) | |
| 578-736, gnl|bosTau2|chr17 (38450876-38451035) | |
| 578-736, gnl|canFam2|chr26 (19187356-19187553) | |
| 578-736, gnl|danRer3|chr12 (22701301-22701118) | |
| 578-736, gnl|dasNov1|scaffold_1641 (105509-105706) | |
| 578-736, gnl|echTel1|scaffold_305005 (55733-55541) | |
| 578-736, gnl|fr1|chrUn (58914431-58914627) | |
| 578-736, gnl|galGal2|chr15 (9356441-9356245) | |
| 578-736, gnl|hg17|chr12 (119115343-119115539) | |
| 578-736, gnl|Hg17|chr12 (119115507-119115348) | |
| 578-736, gnl|loxAfr1|scaffold_21592 (31149-31341) | |
| 578-736, gnl|mm7|chr5 (114773135-114772937) | |
| 578-736, gnl|Mm7|chr5 (114772970-114773129) | |
| 578-736, gnl|monDom2|scaffold_101 (60534-60338) | |
| 578-736, gnl|oryCun1|scaffold_160289 (7561-7758) | |
| 578-736, gnl|panTro1|chr10 (122115932-122116128) | |
| 578-736, gnl|rheMac2|chr11 (121216508-121216702) | |
| 578-736, gnl|rn3|chr12 (42189525-42189722) | |
| 578-736, gnl|tetNig1|chrUn_random (43655337-43655531) | |
| 578-736, gnl|xenTro1|scaffold_9 (4682665-4682857) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-249, gnl|bosTau2|chr15 (53232838-53232998) | |
| 89-249, gnl|canFam2|chr18 (40881858-40881631) | |
| 89-249, gnl|echTel1|scaffold_311467 (34564-34776) | |
| 89-249, gnl|hg17|chr11 (58094598-58094818) | |
| 89-249, gnl|Hg17|chr11 (58094763-58094603) | |
| 89-249, gnl|mm7|chr19 (12484196-12483976) | |
| 89-249, gnl|Mm7|chr19 (12484029-12484189) | |
| 89-249, gnl|monDom2|scaffold_33 (22621219-22621420) | |
| 89-249, gnl|panTro1|chr9 (59034117-59034337) | |
| 89-249, gnl|rheMac2|chr14 (14979437-14979217) | |
| 89-249, gnl|rn3|chr1 (216049772-216049552) | |
| 392-565, gnl|bosTau2|chr15 (53252505-53252678) | |
| 392-565, gnl|canFam2|chr18 (40899015-40898875) | |
| 392-565, gnl|danRer3|chr12 (22693618-22693477) | |
| 392-565, gnl|dasNov1|scaffold_182911 (442-302) | |
| 392-565, gnl|echTel1|scaffold_312663 (93881-94018) | |
| 392-565, gnl|fr1|chrUn (58914798-58914909) | |
| 392-565, gnl|galGal2|chr15 (9355944-9355813) | |
| 392-565, gnl|hg17|chr11 (58075079-58075219) | |
| 392-565, gnl|Hg17|chr11 (58075284-58075111) | |
| 392-565, gnl|mm7|chr19 (12504244-12504105) | |
| 392-565, gnl|Mm7|chr19 (12504038-12504211) | |
| 392-565, gnl|monDom2|scaffold_33 (22609916-22610057) | |
| 392-565, gnl|oryCun1|scaffold_160289 (7843-7963) | |
| 392-565, gnl|panTro1|chr9 (59014199-59014339) | |
| 392-565, gnl|rheMac2|chr14 (14998759-14998619) | |
| 392-565, gnl|rn3|chr1 (216070970-216070856) | |
| 392-565, gnl|tetNig1|chrUn_random (43655594-43655702) | |
| 392-565, gnl|xenTro1|scaffold_9 (4682911-4683020) | |
| 578-736, gnl|bosTau2|chr17 (38450876-38451035) | |
| 578-736, gnl|canFam2|chr26 (19187356-19187553) | |
| 578-736, gnl|danRer3|chr12 (22701301-22701118) | |
| 578-736, gnl|dasNov1|scaffold_1641 (105509-105706) | |
| 578-736, gnl|echTel1|scaffold_305005 (55733-55541) | |
| 578-736, gnl|fr1|chrUn (58914431-58914627) | |
| 578-736, gnl|galGal2|chr15 (9356441-9356245) | |
| 578-736, gnl|hg17|chr12 (119115343-119115539) | |
| 578-736, gnl|Hg17|chr12 (119115507-119115348) | |
| 578-736, gnl|loxAfr1|scaffold_21592 (31149-31341) | |
| 578-736, gnl|mm7|chr5 (114773135-114772937) | |
| 578-736, gnl|Mm7|chr5 (114772970-114773129) | |
| 578-736, gnl|monDom2|scaffold_101 (60534-60338) | |
| 578-736, gnl|oryCun1|scaffold_160289 (7561-7758) | |
| 578-736, gnl|panTro1|chr10 (122115932-122116128) | |
| 578-736, gnl|rheMac2|chr11 (121216508-121216702) | |
| 578-736, gnl|rn3|chr12 (42189525-42189722) | |
| 578-736, gnl|tetNig1|chrUn_random (43655337-43655531) | |
| 578-736, gnl|xenTro1|scaffold_9 (4682665-4682857) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |