Non-Coding RNA Search

Ss1.1-LyN1-MLN01G070033.5

Sequence:


               
               TGGAAAGGGTGCCTCGGGACCTCACTACGGTCCCGCCTCTTCCTGAGCACCGGCACGTGA
TGCCGGAAGTGGGTGGGAGTAATATGGCGACGTTTCCGGCAGGCCCCGGCGGCTGAAAGC
CGGGCCGGAGGTGCTACTCTGGGTCCGGGTTCTTGTCCCGGTGCCGCCGAGGCGGCGACT
GCGGTAGGAAGAAGGAAGTGTTGGACGAGTTGGCCCACCACCGCTATACGTTGCGCCTCA
TTTCAACTCAAAATGAACTATATGCCCGGCACCGCTAGCCTCATCGAGGACATCGACAAA
AAGCACTTGGTTCTGCTTCGAGATGGAAGGACACTTATAGGCTTTTTAAGAAGCATTGAT
CAATTTGCTAACTTAGTGCTACATCAGACTGTGGAGCGTATTCATGTGGGCAAAAAATAC
GGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGGAGAA
ATAGACTTAGAAAAGGAGAGTGATACACCCCTCCAGCAAGTGTCTATTGAAGAGATCCTG
GAAGAACAGAGGGTGGAGCAGCAGGCCAGGCTGGAAGCCGAGAAGCTGAAGGTCCAGGCC
CTTAAGGACCGAGGCCTCTCCATCCCCCGAGCAGATACTCTGGATGAGTATTAAGTCTTT
TTCTCAGAGGCTGTTGCTCTTGGGGAGCAGGGGCTGTCACTAAATGAAAGTGGAGTCCTG
ATCACCTTTGACTCAAGACTGTAGAGCTTTGAAAAGCCATTTTTATTTTGAATTCTTTCC
CATATGCAACATGAAGAAATCATGTATTTGGGTTTTTTTTTTTTTTCTTTTTAATAACAA
AATCACCATTTGAAGAAACAGTGGCATGGACTCGTTTCACACGTCATTGTGGAGCCAGCA
GCTGCTTTTCTGTATTAATCTCCTCACCCCACATTGGAGGATTTAGGGGACAGTCTTCAT
TTACTTGTAAATAAAGGATGGGGTCTAAAATTTTCGATGTTACTTCCCAAGTTTGAGTTT
CTCCAATGAATGGACATGATTAAATTTCTTCTCTCAAAGGCGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAAGGGTGCCTCGGGACCTCACTACGGTCCCGCCTCTTCCTGAGCACCGGCACGTGA
TGCCGGAAGTGGGTGGGAGTAATATGGCGACGTTTCCGGCAGGCCCCGGCGGCTGAAAGC
CGGGCCGGAGGTGCTACTCTGGGTCCGGGTTCTTGTCCCGGTGCCGCCGAGGCGGCGACT
GCGGTAGGAAGAAGGAAGTGTTGGACGAGTTGGCCCACCACCGCTATACGTTGCGCCTCA
TTTCAACTCAAAATGAACTATATGCCCGGCACCGCTAGCCTCATCGAGGACATCGACAAA
AAGCACTTGGTTCTGCTTCGAGATGGAAGGACACTTATAGGCTTTTTAAGAAGCATTGAT
CAATTTGCTAACTTAGTGCTACATCAGACTGTGGAGCGTATTCATGTGGGCAAAAAATAC
GGTGATATTCCTCGAGGGATTTTTGTGGTCAGAGGAGAAAATGTGGTCCTACTAGGAGAA
ATAGACTTAGAAAAGGAGAGTGATACACCCCTCCAGCAAGTGTCTATTGAAGAGATCCTG
GAAGAACAGAGGGTGGAGCAGCAGGCCAGGCTGGAAGCCGAGAAGCTGAAGGTCCAGGCC
CTTAAGGACCGAGGCCTCTCCATCCCCCGAGCAGATACTCTGGATGAGTATTAAGTCTTT
TTCTCAGAGGCTGTTGCTCTTGGGGAGCAGGGGCTGTCACTAAATGAAAGTGGAGTCCTG
ATCACCTTTGACTCAAGACTGTAGAGCTTTGAAAAGCCATTTTTATTTTGAATTCTTTCC
CATATGCAACATGAAGAAATCATGTATTTGGGTTTTTTTTTTTTTTCTTTTTAATAACAA
AATCACCATTTGAAGAAACAGTGGCATGGACTCGTTTCACACGTCATTGTGGAGCCAGCA
GCTGCTTTTCTGTATTAATCTCCTCACCCCACATTGGAGGATTTAGGGGACAGTCTTCAT
TTACTTGTAAATAAAGGATGGGGTCTAAAATTTTCGATGTTACTTCCCAAGTTTGAGTTT
CTCCAATGAATGGACATGATTAAATTTCTTCTCTCAAAGGCGTAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5262854|emb|CAB45865.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5262854|emb|CAB45865.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               604-750, + strand, RNAz p=0.955674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-750, + strand, RNAz p=0.955674

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014462, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014462, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               27-298, gnl|bosTau2|chr27 (21228194-21227924)
               

               
               27-298, gnl|Hg17|chr8 (38153221-38152950)
               

               
               27-298, gnl|Mm7|chr8 (24541978-24542204)
               


               
               484-1065, gnl|bosTau2|chr27 (21218592-21217993)
               

               
               484-1065, gnl|Hg17|chr8 (38140515-38139933)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-298, gnl|bosTau2|chr27 (21228194-21227924)
               

               
               27-298, gnl|Hg17|chr8 (38153221-38152950)
               

               
               27-298, gnl|Mm7|chr8 (24541978-24542204)
               


               
               484-1065, gnl|bosTau2|chr27 (21218592-21217993)
               

               
               484-1065, gnl|Hg17|chr8 (38140515-38139933)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               che (0.545256)
               

               
               cki (0.495704)
               

               
               duo (0.345602)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.545256)
               

               
               cki (0.495704)
               

               
               duo (0.345602)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	27-298, gnl\|bosTau2\|chr27 (21228194-21227924)
	27-298, gnl\|Hg17\|chr8 (38153221-38152950)
	27-298, gnl\|Mm7\|chr8 (24541978-24542204)

	484-1065, gnl\|bosTau2\|chr27 (21218592-21217993)
	484-1065, gnl\|Hg17\|chr8 (38140515-38139933)

	che (0.545256)
	cki (0.495704)
	duo (0.345602)
	fce (0.271592)
	ute (0.265569)
	nms (0.213858)
	cmu (0.186393)
	fbs (0.175346)
	nje (0.16592)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	jej (0.0989218)
	eje (0.0988338)