Ss1.1-LyN1-MLN01G070038.5
|
TTCCCGCTGCCACCCCGCCCCTCGCCGTGGACATTTATCCTCCGCTGCTCAGGCCCTGCC
GCCATCGCCACAGACTCAGCGTCCAGAGAAGCTACACCAGAGAACAGATCATGGCCCCCT
TTGCACCCCTGGCCTCTGGCATCCTGCTGCTGCTGTGGCTGACTGCCCCCAGCCGAGCCT
GTACCTGCGTCCCACCCCACCCACAGACGGCCTTCTGCAGCTCCGACCTGGTCATCAGGG
CCAAGTTTGTGGGAGCCCCAGAGTTCAACCAGACCGCCTCGTACAAGCGTTATGAGATCA
AGATGACCAAGATGTTCAAAGGGTTCAATGCCTTGGGGGATGCCCCTGACATCCGGTTCA
TCTACACCCCCGCCATGGAGAGCGTCTGCGGATACTTCCACAGGTCCCAGAACCGCAGCC
AGGAGTTTCTCATAGCTGGACAACTGTGGAACGGGCACCTGCACATCACCACCTGCAGTT
TTGTGGCTCCCTGGAACAGTCTGAGCTCAGCTCAGCGCCAGGGCTTCACCGAGATCTATG
CTGCTGGCTGTGAGGAATGCACAGTGTTTCCCTGCACATCCATCCCCTGCAAACTGCAGA
GTGACACTCACTGCTTGTGGACAGACCAGCTCCTCACAGGCTCTGACAAGGGCTTCCAGA
GCCGCCACCTTGCCTGCATGCCCCGGGAGCCAGGAATGTGCACCTGGCAGTCCTTGCGGC
CCCGGGTGGCCTGAATCCTGCGCCCAGCAGAAGCCGAAACCTGCACAGTGTTCACCTCTC
TTCCCGCTCCCACCTGTCTTTCTCCAAGATGATGAAATAAAGAACTACCACCCAGCAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCCCGCTGCCACCCCGCCCCTCGCCGTGGACATTTATCCTCCGCTGCTCAGGCCCTGCC
GCCATCGCCACAGACTCAGCGTCCAGAGAAGCTACACCAGAGAACAGATCATGGCCCCCT
TTGCACCCCTGGCCTCTGGCATCCTGCTGCTGCTGTGGCTGACTGCCCCCAGCCGAGCCT
GTACCTGCGTCCCACCCCACCCACAGACGGCCTTCTGCAGCTCCGACCTGGTCATCAGGG
CCAAGTTTGTGGGAGCCCCAGAGTTCAACCAGACCGCCTCGTACAAGCGTTATGAGATCA
AGATGACCAAGATGTTCAAAGGGTTCAATGCCTTGGGGGATGCCCCTGACATCCGGTTCA
TCTACACCCCCGCCATGGAGAGCGTCTGCGGATACTTCCACAGGTCCCAGAACCGCAGCC
AGGAGTTTCTCATAGCTGGACAACTGTGGAACGGGCACCTGCACATCACCACCTGCAGTT
TTGTGGCTCCCTGGAACAGTCTGAGCTCAGCTCAGCGCCAGGGCTTCACCGAGATCTATG
CTGCTGGCTGTGAGGAATGCACAGTGTTTCCCTGCACATCCATCCCCTGCAAACTGCAGA
GTGACACTCACTGCTTGTGGACAGACCAGCTCCTCACAGGCTCTGACAAGGGCTTCCAGA
GCCGCCACCTTGCCTGCATGCCCCGGGAGCCAGGAATGTGCACCTGGCAGTCCTTGCGGC
CCCGGGTGGCCTGAATCCTGCGCCCAGCAGAAGCCGAAACCTGCACAGTGTTCACCTCTC
TTCCCGCTCCCACCTGTCTTTCTCCAAGATGATGAAATAAAGAACTACCACCCAGCAAAA
AAAAAAAAAAAA
|
|
gi|12643979|sp|P35624|TIMP1_PIG |
Protein identifier
|
gi|12643979|sp|P35624|TIMP1_PIG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
101-226, gnl|bosTau2|chrX (25492847-25492972) |
|
101-226, gnl|Hg17|chrX (47199059-47199184) |
|
101-226, gnl|Mm7|chrX (19304182-19304307) |
| |
|
310-439, gnl|bosTau2|chrX (25493992-25494121) |
|
310-439, gnl|canFam2|chrX (41151085-41151248) |
|
310-439, gnl|echTel1|scaffold_315292 (3493-3648) |
|
310-439, gnl|hg17|chrX (47200794-47200958) |
|
310-439, gnl|Hg17|chrX (47200856-47200985) |
|
310-439, gnl|mm7|chrX (19306136-19306300) |
|
310-439, gnl|Mm7|chrX (19306198-19306327) |
|
310-439, gnl|monDom2|scaffold_134 (587384-587281) |
|
310-439, gnl|oryCun1|scaffold_174614 (91349-91511) |
|
310-439, gnl|rheMac2|chrX (45406085-45406249) |
|
310-439, gnl|rn3|chrX (12549764-12549600) |
|
310-439, gnl|xenTro1|scaffold_1262 (184545-184369) |
| |
|
564-837, gnl|bosTau2|chrX (25495468-25495741) |
|
564-837, gnl|Hg17|chrX (47202174-47202442) |
|
564-837, gnl|Mm7|chrX (19307621-19307883) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
101-226, gnl|bosTau2|chrX (25492847-25492972) |
|
101-226, gnl|Hg17|chrX (47199059-47199184) |
|
101-226, gnl|Mm7|chrX (19304182-19304307) |
| |
|
310-439, gnl|bosTau2|chrX (25493992-25494121) |
|
310-439, gnl|canFam2|chrX (41151085-41151248) |
|
310-439, gnl|echTel1|scaffold_315292 (3493-3648) |
|
310-439, gnl|hg17|chrX (47200794-47200958) |
|
310-439, gnl|Hg17|chrX (47200856-47200985) |
|
310-439, gnl|mm7|chrX (19306136-19306300) |
|
310-439, gnl|Mm7|chrX (19306198-19306327) |
|
310-439, gnl|monDom2|scaffold_134 (587384-587281) |
|
310-439, gnl|oryCun1|scaffold_174614 (91349-91511) |
|
310-439, gnl|rheMac2|chrX (45406085-45406249) |
|
310-439, gnl|rn3|chrX (12549764-12549600) |
|
310-439, gnl|xenTro1|scaffold_1262 (184545-184369) |
| |
|
564-837, gnl|bosTau2|chrX (25495468-25495741) |
|
564-837, gnl|Hg17|chrX (47202174-47202442) |
|
564-837, gnl|Mm7|chrX (19307621-19307883) |
|
cov (2.5109) |
|
amn (1.25313) |
|
ute (0.796707) |
|
cag (0.604778) |
|
mcp (0.511945) |
|
elu (0.385356) |
|
clu (0.358938) |
|
cga (0.279096) |
|
nca (0.273748) |
|
fce (0.271592) |
|
eep (0.245128) |
|
cly (0.241284) |
|
eru (0.240096) |
|
ece (0.229305) |
|
jca (0.22792) |
|
nms (0.213858) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
cov (2.5109) |
|
amn (1.25313) |
|
ute (0.796707) |
|
cag (0.604778) |
|
mcp (0.511945) |
|
elu (0.385356) |
|
clu (0.358938) |
|
cga (0.279096) |
|
nca (0.273748) |
|
fce (0.271592) |
|
eep (0.245128) |
|
cly (0.241284) |
|
eru (0.240096) |
|
ece (0.229305) |
|
jca (0.22792) |
|
nms (0.213858) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
med (0.116252) |
|
nbm (0.0993246) |
