Non-Coding RNA Search

Ss1.1-LyN1-MLN01G070064.5

Sequence:


               
               TCCTTCCACAGGACTCCAAGGTCTGCAAGCACAACACCAGCATGTCGTCAGTTCAGCTCC
TCCACCACCCCCTCCTCCTCCGCCTTCCAGTGTTTTGGCTTCTGGTCATCATACCACATC
AGCTCAAGCCTTACATCATCCACCTCATCAAGGACCTCCACTTTTCCCTTCAAGTGCTCA
TCCAGCCGTACCACCGTATCCCTCACAAGCTACACATCACACCACGCTGGGACCGGGACC
CCAACACCAGCCTTCTGGAGCAGGGCCACATTGTCCGTTACCAGTTGCAGGTCCTCATCT
CCAGCCCCAAGGACCAAACAGTATTCCAACACCTACTGCTTCAGGGTTCTGTCCACATCC
TGGCTCTGTGGCCCTGCCACATGGGGTTCAAGGACCTCAGCAGGCATCTCCAGTGCCTGG
ACAGATTCCAATTCACAGAGCACAGGTGCCACCAACATTTCAGAACAATTACCATGGTTC
AGGGTGGCATTAGAATGGACTCCAAAAACATTTTTTTAAATGTTCTGTAAAATAAACTGT
ATATTTCATATGTACCTGTTAAGGTACTTTTTAAAGCTTGTACATGAAACTTTGTATAAA
AACAAAAACAAACAAAAAAAACCAGTGCTCTCTCTTTGTATTTTTCCCATTTTTGCTTTT
TAAAATTCCTTTAAACTGTGCTGTTAAGCCAGTATTAGGTATCTTTATTTTGTAAGTAAA
CATTCCAGCTGTTTTTCTGGCAGTAGATTTGATGCCACATGATCTTACATTTTATTGTTG
CAGTTAAATTCATTTAGTGAATGTTTTCTATATTATTTTATACATATGCATTAACTACAC
AGCTAAGTAATGGCACTATGAGAATTTTCTTTTTCTCCGTCAGCAGTTCTGTGGGTGCAT
CTTAAGGTATAAAAAAAATGCAATACAAGTTTTTATAGTTTGGTGTGGACCTGGCTCATT
TTGTTTCATCGGTTATTTGCAAGCAAAATGTAATTTAATGTATAGATGATTTTTAATGTC
TCCTGAAAAACTGTAAATACTGCATTTCTTTTGCATATATAATTGCTTACAGCTTTTCTC
ATTCGATATATAGCATTGTACATATGGACAAGTCTTTGCAAAACTGTGTGATCTTTGTGA
AAGTAGTACAGTATATGGCCTTTAATTTCTTTTTTATTTTAAATATACTGTCACATTGAA
GCACTGGTTGGGCATTTTAATTCATGTTAATAAATCACAATTATGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTCCACAGGACTCCAAGGTCTGCAAGCACAACACCAGCATGTCGTCAGTTCAGCTCC
TCCACCACCCCCTCCTCCTCCGCCTTCCAGTGTTTTGGCTTCTGGTCATCATACCACATC
AGCTCAAGCCTTACATCATCCACCTCATCAAGGACCTCCACTTTTCCCTTCAAGTGCTCA
TCCAGCCGTACCACCGTATCCCTCACAAGCTACACATCACACCACGCTGGGACCGGGACC
CCAACACCAGCCTTCTGGAGCAGGGCCACATTGTCCGTTACCAGTTGCAGGTCCTCATCT
CCAGCCCCAAGGACCAAACAGTATTCCAACACCTACTGCTTCAGGGTTCTGTCCACATCC
TGGCTCTGTGGCCCTGCCACATGGGGTTCAAGGACCTCAGCAGGCATCTCCAGTGCCTGG
ACAGATTCCAATTCACAGAGCACAGGTGCCACCAACATTTCAGAACAATTACCATGGTTC
AGGGTGGCATTAGAATGGACTCCAAAAACATTTTTTTAAATGTTCTGTAAAATAAACTGT
ATATTTCATATGTACCTGTTAAGGTACTTTTTAAAGCTTGTACATGAAACTTTGTATAAA
AACAAAAACAAACAAAAAAAACCAGTGCTCTCTCTTTGTATTTTTCCCATTTTTGCTTTT
TAAAATTCCTTTAAACTGTGCTGTTAAGCCAGTATTAGGTATCTTTATTTTGTAAGTAAA
CATTCCAGCTGTTTTTCTGGCAGTAGATTTGATGCCACATGATCTTACATTTTATTGTTG
CAGTTAAATTCATTTAGTGAATGTTTTCTATATTATTTTATACATATGCATTAACTACAC
AGCTAAGTAATGGCACTATGAGAATTTTCTTTTTCTCCGTCAGCAGTTCTGTGGGTGCAT
CTTAAGGTATAAAAAAAATGCAATACAAGTTTTTATAGTTTGGTGTGGACCTGGCTCATT
TTGTTTCATCGGTTATTTGCAAGCAAAATGTAATTTAATGTATAGATGATTTTTAATGTC
TCCTGAAAAACTGTAAATACTGCATTTCTTTTGCATATATAATTGCTTACAGCTTTTCTC
ATTCGATATATAGCATTGTACATATGGACAAGTCTTTGCAAAACTGTGTGATCTTTGTGA
AAGTAGTACAGTATATGGCCTTTAATTTCTTTTTTATTTTAAATATACTGTCACATTGAA
GCACTGGTTGGGCATTTTAATTCATGTTAATAAATCACAATTATGTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|38201800|gb|AAR13893.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38201800|gb|AAR13893.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-191, - strand, RNAz p=0.651552
               

               
               232-645, - strand, RNAz p=0.984033

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-191, - strand, RNAz p=0.651552
               

               
               232-645, - strand, RNAz p=0.984033

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1247, gnl|bosTau2|chr4 (22269597-22270818)
               

               
               2-1247, gnl|Hg17|chr7 (104347240-104348476)
               

               
               2-1247, gnl|Mm7|chr5 (22543034-22544304)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1247, gnl|bosTau2|chr4 (22269597-22270818)
               

               
               2-1247, gnl|Hg17|chr7 (104347240-104348476)
               

               
               2-1247, gnl|Mm7|chr5 (22543034-22544304)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               fty (0.351679)
               

               
               mga (0.32041)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               mga (0.32041)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	81-191, - strand, RNAz p=0.651552
	232-645, - strand, RNAz p=0.984033

	2-1247, gnl\|bosTau2\|chr4 (22269597-22270818)
	2-1247, gnl\|Hg17\|chr7 (104347240-104348476)
	2-1247, gnl\|Mm7\|chr5 (22543034-22544304)

	fty (0.351679)
	mga (0.32041)
	lin (0.291206)
	tra (0.246184)
	col (0.195008)
	eye (0.170503)
	csp (0.161186)
	fco (0.157208)
	ctl (0.153069)
	cli (0.152812)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	csk (0.140746)
	che (0.136314)
	ste (0.135208)
	ret (0.128733)
	thg (0.126791)
	cbl (0.114797)
	jca (0.11396)