Non-Coding RNA Search

Ss1.1-LyN1-MLN01G070081.5.5

Sequence:


               
               TGCCGTGCGCCCGCCGAGGAGGTGAGTACGTTGGAGCCCAGCACCATCGCTATCCTCTTT
CCCCAATCCGGCCCCATCCGGCCTCGTCCGCCGTCCCCGGGGCCCACCCGCCGCTGTCTC
CGTCCGGCCGTGTCCCGGGCTCTGCGTCCACGCCGGCAGCCCGCCGCGCCCGGGCCCTAA
TTTTCCCTGCCGTGCGCCCGCCGAGGAGGCTCGTCGGCCGCAGCCATGGCGCCCAGCAGG
AATGGCATGATCCTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGG
TTCAACCAGCCGGCGCGCAAGATCCGCAGGCGCAAGGCTCGGCAGGCCAAGGCGCGCCGC
ATCGCCCCGCGCCCCGCGTCCGGCCCGCTGCGGCCGGTGGTGAGATGCCCCACGGTCCGG
TACCACACGAAGGTGCGCGCCGGCAGAGGCTTCAGCCTGGAGGAGCTGAGGGTGGCCGGC
ATCCACAAGAAGGTGGCCCGGACCATTGGGATCTCGGTGGATCCCCGGCGGCGGAACAAG
TGCACGGAGTCCCTGCAGGCTAATGTGCAGCGGCTCAAGGAGTACCGCTCCAAGCTCATC
CTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGCGACAGCTCTGCTGAAGAGCTCAAG
TTGGCCACCCAGCTGACAGGACCGGTCATGCCCATACGGAACGTGTACAAGAGGGAAAAG
GCCAGAGTCATCACGGACGAGGAGAAGAACTTCAAGGCCTTTGCCAGTCTCCGCATGGCC
CGTGCCAACGCCCGGCTCTTTGGTATACGGGCAAAAAGGGCCAAGGAAGCTGCAGAACAG
GATGTGGAGAAGAAAAAATAAAGTGCTGTTGGCATCTTGTGGTAAACCTACAGTGTCTGC
GACCTTCGTGGTAGAAGAACCTGGGGAGCCTCCTTCCTATGGGATCCTGGGGCGGGTCCT
TGTCCCTCAGAGCCTGCTGTGAGGGAGACAGCCTCGGGGCTGGAGTCTTGTGCTCAGCCA
GCTTCCTGTCTGGACCTTCCAGCCTTGCGCGTCCTGCGCATTCCGCCTCAGGTGGCGCGA
GGACTAGTACTTCACGTCTGAAACGAACACTTTATAAGATTTTGATTTGATTTCCATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGTGCGCCCGCCGAGGAGGTGAGTACGTTGGAGCCCAGCACCATCGCTATCCTCTTT
CCCCAATCCGGCCCCATCCGGCCTCGTCCGCCGTCCCCGGGGCCCACCCGCCGCTGTCTC
CGTCCGGCCGTGTCCCGGGCTCTGCGTCCACGCCGGCAGCCCGCCGCGCCCGGGCCCTAA
TTTTCCCTGCCGTGCGCCCGCCGAGGAGGCTCGTCGGCCGCAGCCATGGCGCCCAGCAGG
AATGGCATGATCCTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGG
TTCAACCAGCCGGCGCGCAAGATCCGCAGGCGCAAGGCTCGGCAGGCCAAGGCGCGCCGC
ATCGCCCCGCGCCCCGCGTCCGGCCCGCTGCGGCCGGTGGTGAGATGCCCCACGGTCCGG
TACCACACGAAGGTGCGCGCCGGCAGAGGCTTCAGCCTGGAGGAGCTGAGGGTGGCCGGC
ATCCACAAGAAGGTGGCCCGGACCATTGGGATCTCGGTGGATCCCCGGCGGCGGAACAAG
TGCACGGAGTCCCTGCAGGCTAATGTGCAGCGGCTCAAGGAGTACCGCTCCAAGCTCATC
CTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGCGACAGCTCTGCTGAAGAGCTCAAG
TTGGCCACCCAGCTGACAGGACCGGTCATGCCCATACGGAACGTGTACAAGAGGGAAAAG
GCCAGAGTCATCACGGACGAGGAGAAGAACTTCAAGGCCTTTGCCAGTCTCCGCATGGCC
CGTGCCAACGCCCGGCTCTTTGGTATACGGGCAAAAAGGGCCAAGGAAGCTGCAGAACAG
GATGTGGAGAAGAAAAAATAAAGTGCTGTTGGCATCTTGTGGTAAACCTACAGTGTCTGC
GACCTTCGTGGTAGAAGAACCTGGGGAGCCTCCTTCCTATGGGATCCTGGGGCGGGTCCT
TGTCCCTCAGAGCCTGCTGTGAGGGAGACAGCCTCGGGGCTGGAGTCTTGTGCTCAGCCA
GCTTCCTGTCTGGACCTTCCAGCCTTGCGCGTCCTGCGCATTCCGCCTCAGGTGGCGCGA
GGACTAGTACTTCACGTCTGAAACGAACACTTTATAAGATTTTGATTTGATTTCCATGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q56JZ1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q56JZ1_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               741-860, - strand, RNAz p=0.700726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               741-860, - strand, RNAz p=0.700726

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               182-925, gnl|bosTau2|chr18 (25068334-25069077)
               

               
               182-925, gnl|Hg17|chr17 (17228081-17227391)
               

               
               182-925, gnl|Mm7|chr5 (92128212-92127513)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-925, gnl|bosTau2|chr18 (25068334-25069077)
               

               
               182-925, gnl|Hg17|chr17 (17228081-17227391)
               

               
               182-925, gnl|Mm7|chr5 (92128212-92127513)

Expressed library(ies): 57 entry(ies)

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Expressed library(ies): 57 entry(ies)

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               med (3.60381)
               

               
               cag (3.32628)
               

               
               eep (2.81897)
               

               
               cga (2.79096)
               

               
               nep (2.57495)
               

               
               cly (2.41284)
               

               
               elu (2.31214)
               

               
               ese (2.27704)
               

               
               csp (2.25661)
               

               
               fty (1.93424)
               

               
               mcp (1.87713)
               

               
               cov (1.85014)
               

               
               jca (1.7094)
               

               
               lnt (1.7077)
               

               
               ebs (1.65622)
               

               
               eje (1.58134)
               

               
               pty (1.56986)
               

               
               eru (1.56062)
               

               
               fli (1.42017)
               

               
               ill (1.40474)
               

               
               ece (1.37583)
               

               
               col (1.36505)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               nlu (1.34177)
               

               
               nje (1.32736)
               

               
               mas (1.26183)
               

               
               amn (1.25313)
               

               
               ecc (1.15035)
               

               
               nbm (1.09257)
               

               
               nms (1.06929)
               

               
               jej (0.989218)
               

               
               ton (0.877501)
               

               
               duo (0.864006)
               

               
               hlv (0.835538)
               

               
               nca (0.821243)
               

               
               nco (0.808669)
               

               
               nmm (0.796813)
               

               
               hyp (0.714184)
               

               
               ute (0.663922)
               

               
               eli (0.607257)
               

               
               fcc (0.593354)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               cli (0.305623)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (3.60381)
               

               
               cag (3.32628)
               

               
               eep (2.81897)
               

               
               cga (2.79096)
               

               
               nep (2.57495)
               

               
               cly (2.41284)
               

               
               elu (2.31214)
               

               
               ese (2.27704)
               

               
               csp (2.25661)
               

               
               fty (1.93424)
               

               
               mcp (1.87713)
               

               
               cov (1.85014)
               

               
               jca (1.7094)
               

               
               lnt (1.7077)
               

               
               ebs (1.65622)
               

               
               eje (1.58134)
               

               
               pty (1.56986)
               

               
               eru (1.56062)
               

               
               fli (1.42017)
               

               
               ill (1.40474)
               

               
               ece (1.37583)
               

               
               col (1.36505)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               nlu (1.34177)
               

               
               nje (1.32736)
               

               
               mas (1.26183)
               

               
               amn (1.25313)
               

               
               ecc (1.15035)
               

               
               nbm (1.09257)
               

               
               nms (1.06929)
               

               
               jej (0.989218)
               

               
               ton (0.877501)
               

               
               duo (0.864006)
               

               
               hlv (0.835538)
               

               
               nca (0.821243)
               

               
               nco (0.808669)
               

               
               nmm (0.796813)
               

               
               hyp (0.714184)
               

               
               ute (0.663922)
               

               
               eli (0.607257)
               

               
               fcc (0.593354)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               cli (0.305623)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	182-925, gnl\|bosTau2\|chr18 (25068334-25069077)
	182-925, gnl\|Hg17\|chr17 (17228081-17227391)
	182-925, gnl\|Mm7\|chr5 (92128212-92127513)

	med (3.60381)
	cag (3.32628)
	eep (2.81897)
	cga (2.79096)
	nep (2.57495)
	cly (2.41284)
	elu (2.31214)
	ese (2.27704)
	csp (2.25661)
	fty (1.93424)
	mcp (1.87713)
	cov (1.85014)
	jca (1.7094)
	lnt (1.7077)
	ebs (1.65622)
	eje (1.58134)
	pty (1.56986)
	eru (1.56062)
	fli (1.42017)
	ill (1.40474)
	ece (1.37583)
	col (1.36505)
	eye (1.36402)
	fce (1.35796)
	nlu (1.34177)
	nje (1.32736)
	mas (1.26183)
	amn (1.25313)
	ecc (1.15035)
	nbm (1.09257)
	nms (1.06929)
	jej (0.989218)
	ton (0.877501)
	duo (0.864006)
	hlv (0.835538)
	nca (0.821243)
	nco (0.808669)
	nmm (0.796813)
	hyp (0.714184)
	ute (0.663922)
	eli (0.607257)
	fcc (0.593354)
	cut (0.339847)
	cje (0.330469)
	cli (0.305623)
	hea (0.204499)
	aor (0.195274)
	fbs (0.175346)
	fhi (0.169578)
	cki (0.165235)
	cst (0.140036)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)