Non-Coding RNA Search

Ss1.1-LyN1-MLN01G080038.5

Sequence:


               
               AGCCGCCAAGCTGCTGCGGCGCGCCGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCC
CAGCCGCCGCGTCTTCAACCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATCAA
GGACATGGAGAAAATGTTCAAGCAGTATGACGCCGGCCGGGATGGCTTCATCGACCTGAT
GGAGCTCAAGCTCATGATGGAGAAACTGGGAGCTCCTCAGACCCACCTGGGTCTGAAAAA
CATGATCAAGGAGGTGGACGAAGACTTTGACAGCAAGCTCAGCTTCCGGGAGTTCCTCCT
GATTTTCCGCAAGGCAGCAGCCGGGGAGCTGCAGGAGGACAGCGGGCTGCACGTGCTGGC
CCGCCTCTCCGAGATCGATGTGTCCACCGAGGGTGTCAAGGGAGCGAAGAGCTTCTTTGA
GGCCAAGGTCCAGGCCATCAACGTGTCCAGCCGCTTCGAGGAGGAGATCAAGGCAGAGCA
GGAGGAGAGGAAGAAGCAGGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTTCAAGGAGCT
GCAGTCCACCTTCAAGTAGCAAGGGGTGCACCCCACTGCCTGGCCCTGGCCCCAGCACCC
GGTCCGGCTGGCAAGGGTGGGCAGACCGGAGACCAAGCCTGATCCTTGGCTTGGTCTGAA
GAGACCAGGCTAAAAAGCCACACATATCTGTGAACGAGCCGGTGGAGGGGCGCCCGACGA
GGCGGCCGAGGCGCTGGGCAGCGCGGACGACGAGCTGAGCGCCCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGCCAAGCTGCTGCGGCGCGCCGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCC
CAGCCGCCGCGTCTTCAACCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATCAA
GGACATGGAGAAAATGTTCAAGCAGTATGACGCCGGCCGGGATGGCTTCATCGACCTGAT
GGAGCTCAAGCTCATGATGGAGAAACTGGGAGCTCCTCAGACCCACCTGGGTCTGAAAAA
CATGATCAAGGAGGTGGACGAAGACTTTGACAGCAAGCTCAGCTTCCGGGAGTTCCTCCT
GATTTTCCGCAAGGCAGCAGCCGGGGAGCTGCAGGAGGACAGCGGGCTGCACGTGCTGGC
CCGCCTCTCCGAGATCGATGTGTCCACCGAGGGTGTCAAGGGAGCGAAGAGCTTCTTTGA
GGCCAAGGTCCAGGCCATCAACGTGTCCAGCCGCTTCGAGGAGGAGATCAAGGCAGAGCA
GGAGGAGAGGAAGAAGCAGGCGGAGGAGATGAAGCAGCGGAAAGCGGCCTTCAAGGAGCT
GCAGTCCACCTTCAAGTAGCAAGGGGTGCACCCCACTGCCTGGCCCTGGCCCCAGCACCC
GGTCCGGCTGGCAAGGGTGGGCAGACCGGAGACCAAGCCTGATCCTTGGCTTGGTCTGAA
GAGACCAGGCTAAAAAGCCACACATATCTGTGAACGAGCCGGTGGAGGGGCGCCCGACGA
GGCGGCCGAGGCGCTGGGCAGCGCGGACGACGAGCTGAGCGCCCAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31981086|ref|NP_080270.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31981086|ref|NP_080270.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-146, gnl|bosTau2|chr16 (38688698-38688840)
               

               
               4-146, gnl|Hg17|chr1 (15481941-15482083)
               

               
               4-146, gnl|Mm7|chr4 (141253141-141252999)
               


               
               423-735, gnl|bosTau2|chr16 (38704789-38705108)
               

               
               423-735, gnl|Hg17|chr1 (15500392-15500696)
               

               
               423-735, gnl|Mm7|chr4 (141238323-141238008)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-146, gnl|bosTau2|chr16 (38688698-38688840)
               

               
               4-146, gnl|Hg17|chr1 (15481941-15482083)
               

               
               4-146, gnl|Mm7|chr4 (141253141-141252999)
               


               
               423-735, gnl|bosTau2|chr16 (38704789-38705108)
               

               
               423-735, gnl|Hg17|chr1 (15500392-15500696)
               

               
               423-735, gnl|Mm7|chr4 (141238323-141238008)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	4-146, gnl\|bosTau2\|chr16 (38688698-38688840)
	4-146, gnl\|Hg17\|chr1 (15481941-15482083)
	4-146, gnl\|Mm7\|chr4 (141253141-141252999)

	423-735, gnl\|bosTau2\|chr16 (38704789-38705108)
	423-735, gnl\|Hg17\|chr1 (15500392-15500696)
	423-735, gnl\|Mm7\|chr4 (141238323-141238008)