Non-Coding RNA Search

Ss1.1-LyN1-MLN01G080102.5

Sequence:


               
               TCACGGTCCTCCATGCGCGTCCTCTTCCGTGTCCACAGGCCGCGCGTCGACCGCCCCCGC
CACGCGGGAGCCACGACTCTCCCCGAAGGACCCACTCACCGGCCCGGGGGCGCCCGAGCG
GCGCCGCCCGGAAGCCGATGCCCACTCGGGAGCCCCTCCACACCTGCGCCGCGCGTCGAC
CGCCCCCGCCACGCGGGAGCCACGACTCTCCCCGAAGGACCCACTCACCGGCCCGGGGGC
GCCCGAGCGGCGCCGCCCGGAAGCCGATGCCCACTCGGGAGCCCCTCCACACCTGCGGCT
CCCGGGGAAACCTGCAGACCCACCCGCCTGGCCCTGGTCCCCCGCGACCGGTGCCTGGAA
GCCTCAAACCCAGCGCGCCTCGCCCTCTGTGCCAGCCCCAGCCCGGAGCACACAGAACAA
GGCCCAGGAAGATTGTATTTGAGGATGAGCTGCCCCTGGGCACCAAGAAGTCTATTAGAG
CCGTCCCCAAGGAACAAATGCCTAGGCTCCACCCAGTTCCTGACTATGAGCTTAAGTACC
CATCAGTGAGCAGTGAGACGGATCGAAGCCGCTATGTTGCAGTGTTCCAGGACCAGTACT
CAGAGTTCTTGGAGCTCCAGCAGGAGGTGGGCTCTGCCCAGGCAAAGCTCCAGCAGCTGC
AGGCCCTGCTGAACTCACTGCCTCCACCCCAAAGCCAGAAGGAGGCCCATGTTGCTGCCC
GTGTCTGGAGGGAATTTAAGAAGAAGCAGATGGACCCCAGCTTCCTGGACAAGCAGGCTC
GCTGCCACTACCTAAAGGGCAAACTAAGGCACCTGAAGATGCAGATCCAGAAGTTTGATG
ACCAAGGAGACAGCGAGGGCTCTGTGTACTTCTGAATGTCCTAGCCAAGAGACAGAGAGA
AACATGGGGTGGGGCTCGGGGCCCTTCCCTTACTTCTCTGCCCAGCTCCTGGCCTTAGCT
CTCGCTGTTGCCCACCCCTGGGGTACGCCTTCCCTGATTTCAAGTGACTCTGCCTTTAAG
GCCCAGATCTGATGGCCCGTCCTCCAGGAAGCCCTCCCAGAACCTCCTCTGGGACTCCCA
AGGAGACCCCAGATCTCAGCCCGTGAAGCGGGTCCTACCCTCCATCCCAGTGGAATAAAC
ACCTATTAAATAAGAGCCACAGGCCAGACTGCCAAAAGGACTTCCCTGGCTCTTGCCCTA
CTCAGGACCCCAGCTTCCTGGACAAGCAGGCTCGCTGCCACTACCTAAAGGGCAAACTAA
GGCACCTGAAGATGCAGATCCAGAAGTTTGATGACCAAGGAGACAGCGAGGGCTCTGTGT
ACTTCTGAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACGGTCCTCCATGCGCGTCCTCTTCCGTGTCCACAGGCCGCGCGTCGACCGCCCCCGC
CACGCGGGAGCCACGACTCTCCCCGAAGGACCCACTCACCGGCCCGGGGGCGCCCGAGCG
GCGCCGCCCGGAAGCCGATGCCCACTCGGGAGCCCCTCCACACCTGCGCCGCGCGTCGAC
CGCCCCCGCCACGCGGGAGCCACGACTCTCCCCGAAGGACCCACTCACCGGCCCGGGGGC
GCCCGAGCGGCGCCGCCCGGAAGCCGATGCCCACTCGGGAGCCCCTCCACACCTGCGGCT
CCCGGGGAAACCTGCAGACCCACCCGCCTGGCCCTGGTCCCCCGCGACCGGTGCCTGGAA
GCCTCAAACCCAGCGCGCCTCGCCCTCTGTGCCAGCCCCAGCCCGGAGCACACAGAACAA
GGCCCAGGAAGATTGTATTTGAGGATGAGCTGCCCCTGGGCACCAAGAAGTCTATTAGAG
CCGTCCCCAAGGAACAAATGCCTAGGCTCCACCCAGTTCCTGACTATGAGCTTAAGTACC
CATCAGTGAGCAGTGAGACGGATCGAAGCCGCTATGTTGCAGTGTTCCAGGACCAGTACT
CAGAGTTCTTGGAGCTCCAGCAGGAGGTGGGCTCTGCCCAGGCAAAGCTCCAGCAGCTGC
AGGCCCTGCTGAACTCACTGCCTCCACCCCAAAGCCAGAAGGAGGCCCATGTTGCTGCCC
GTGTCTGGAGGGAATTTAAGAAGAAGCAGATGGACCCCAGCTTCCTGGACAAGCAGGCTC
GCTGCCACTACCTAAAGGGCAAACTAAGGCACCTGAAGATGCAGATCCAGAAGTTTGATG
ACCAAGGAGACAGCGAGGGCTCTGTGTACTTCTGAATGTCCTAGCCAAGAGACAGAGAGA
AACATGGGGTGGGGCTCGGGGCCCTTCCCTTACTTCTCTGCCCAGCTCCTGGCCTTAGCT
CTCGCTGTTGCCCACCCCTGGGGTACGCCTTCCCTGATTTCAAGTGACTCTGCCTTTAAG
GCCCAGATCTGATGGCCCGTCCTCCAGGAAGCCCTCCCAGAACCTCCTCTGGGACTCCCA
AGGAGACCCCAGATCTCAGCCCGTGAAGCGGGTCCTACCCTCCATCCCAGTGGAATAAAC
ACCTATTAAATAAGAGCCACAGGCCAGACTGCCAAAAGGACTTCCCTGGCTCTTGCCCTA
CTCAGGACCCCAGCTTCCTGGACAAGCAGGCTCGCTGCCACTACCTAAAGGGCAAACTAA
GGCACCTGAAGATGCAGATCCAGAAGTTTGATGACCAAGGAGACAGCGAGGGCTCTGTGT
ACTTCTGAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818107|ref|XP_602337.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818107|ref|XP_602337.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               871-1152, - strand, RNAz p=0.999909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               871-1152, - strand, RNAz p=0.999909

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               21-164, gnl|bosTau2|chr7 (2844748-2844605)
               

               
               21-164, gnl|Hg17|chr19 (17198480-17198627)
               


               
               169-344, gnl|bosTau2|chr7 (2844729-2844554)
               

               
               169-344, gnl|Hg17|chr19 (17198503-17198678)
               


               
               533-698, gnl|bosTau2|chr7 (2843813-2843648)
               

               
               533-698, gnl|Hg17|chr19 (17199649-17199814)
               

               
               533-698, gnl|Mm7|chr8 (69839514-69839679)
               


               
               752-1152, gnl|bosTau2|chr7 (2843150-2842749)
               

               
               752-1152, gnl|Hg17|chr19 (17200611-17201024)
               


               
               1153-1332, gnl|bosTau2|chr7 (2843202-2843023)
               

               
               1153-1332, gnl|Hg17|chr19 (17200561-17200738)
               

               
               1153-1332, gnl|Mm7|chr8 (69839940-69840124)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-164, gnl|bosTau2|chr7 (2844748-2844605)
               

               
               21-164, gnl|Hg17|chr19 (17198480-17198627)
               


               
               169-344, gnl|bosTau2|chr7 (2844729-2844554)
               

               
               169-344, gnl|Hg17|chr19 (17198503-17198678)
               


               
               533-698, gnl|bosTau2|chr7 (2843813-2843648)
               

               
               533-698, gnl|Hg17|chr19 (17199649-17199814)
               

               
               533-698, gnl|Mm7|chr8 (69839514-69839679)
               


               
               752-1152, gnl|bosTau2|chr7 (2843150-2842749)
               

               
               752-1152, gnl|Hg17|chr19 (17200611-17201024)
               


               
               1153-1332, gnl|bosTau2|chr7 (2843202-2843023)
               

               
               1153-1332, gnl|Hg17|chr19 (17200561-17200738)
               

               
               1153-1332, gnl|Mm7|chr8 (69839940-69840124)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	21-164, gnl\|bosTau2\|chr7 (2844748-2844605)
	21-164, gnl\|Hg17\|chr19 (17198480-17198627)

	169-344, gnl\|bosTau2\|chr7 (2844729-2844554)
	169-344, gnl\|Hg17\|chr19 (17198503-17198678)

	533-698, gnl\|bosTau2\|chr7 (2843813-2843648)
	533-698, gnl\|Hg17\|chr19 (17199649-17199814)
	533-698, gnl\|Mm7\|chr8 (69839514-69839679)

	752-1152, gnl\|bosTau2\|chr7 (2843150-2842749)
	752-1152, gnl\|Hg17\|chr19 (17200611-17201024)

	1153-1332, gnl\|bosTau2\|chr7 (2843202-2843023)
	1153-1332, gnl\|Hg17\|chr19 (17200561-17200738)
	1153-1332, gnl\|Mm7\|chr8 (69839940-69840124)

	ece (0.229305)
	nlu (0.191681)
	duo (0.172801)
	nco (0.161734)
	cli (0.152812)
	spl (0.143184)
	cov (0.132153)
	ebs (0.118301)
	med (0.116252)