Non-Coding RNA Search

Ss1.1-LyN1-MLN01G090036.5

Sequence:


               
               CACTCGCTGGCGGTGGGCACGCCGAGCAGAGCTGCGGGCTGATCTCTCTTCGCTCGCGTC
CGCTCCGCCCTCTGCTTTTGTGGATAACTTGCTGCTTGCGGATCGCAACATGACTCTGGA
AGAAGTTCGCGGCCAGGATACGGTTCCAGAAAGCACGGCCAGGATGCAGGGCGCCGGGAA
AGCACTGCACGAGCTGTTGCTGTCGGCGCAGCGACAGGGCTGCCTCACCGCCGGCGTCTA
CGAGTCCGCCAAAGTCCTGAATGTGGACCCCGACAACGTGACCTTTTGCGTGCTGGCTGC
TGACGAGGAAGACGAGGGCGACATTGCGCTGCAAATTCACTTCACTTTGATCCAGGCGTT
CTGCTGTGAGAACGACATCGACATCGTGCGTGTGGGCGATGTACAGCGGCTGGCGGCGAT
CGTGGGCACCGGTGACGAGGCGGGCACGCCGGGAGACCTGCATTGCATCCTCATTTCGAA
CCCCAATGAGGACGCGTGGAAGGACCCCGCCTTGGAGAAGCTCAGCCTGTTCTGCGAGGA
GAGTCGCAGCGTCAACGACTGGGTGCCCAATATCACCCTCCCCGAGTGACAGCCCGGCGG
GGGTCTTGGTCTGATCGACGTGGTAACGCCCCGGGGCGCCTAGCGCGGGGCTGGCTCTGT
GGATGCGCCCTAGGAGGGCGCCCGAGTGCGGCGTGGAGACTGGCAGGCGCCGGCGCGTGG
AGAGCGGCGAGGAGGTGCGGCTCCCTCCCGAGGAGGGGCCCGGCGGCGACAGGGGCAGGC
TGGCCCCAGCCCAGGACTCTACAAGTGTGGGGAGCGGTTGCTCGCCCAGGAAGGCCGGAG
GCGGGACGTTGGCCGCGCGGCCGGGAAGGACAGACTGGCCGGGCAGGCGTGACTCAGCAG
CCTGTGCTCCCGGCAGAAAGGAGGGGAAAGGCAAGGCCAGGAGGCCTGGACTTGTACAGT
AACAGAAGCTCTGACGGACTTAGCAGTAGGCACTGCTGTTTCAAAACGGATCCGGGCGAT
GCTTCGTTTTCTAAAGGATTATGCTGCTGCAGCGTTGAGTCTTACAATAAACTTACTGAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTCGCTGGCGGTGGGCACGCCGAGCAGAGCTGCGGGCTGATCTCTCTTCGCTCGCGTC
CGCTCCGCCCTCTGCTTTTGTGGATAACTTGCTGCTTGCGGATCGCAACATGACTCTGGA
AGAAGTTCGCGGCCAGGATACGGTTCCAGAAAGCACGGCCAGGATGCAGGGCGCCGGGAA
AGCACTGCACGAGCTGTTGCTGTCGGCGCAGCGACAGGGCTGCCTCACCGCCGGCGTCTA
CGAGTCCGCCAAAGTCCTGAATGTGGACCCCGACAACGTGACCTTTTGCGTGCTGGCTGC
TGACGAGGAAGACGAGGGCGACATTGCGCTGCAAATTCACTTCACTTTGATCCAGGCGTT
CTGCTGTGAGAACGACATCGACATCGTGCGTGTGGGCGATGTACAGCGGCTGGCGGCGAT
CGTGGGCACCGGTGACGAGGCGGGCACGCCGGGAGACCTGCATTGCATCCTCATTTCGAA
CCCCAATGAGGACGCGTGGAAGGACCCCGCCTTGGAGAAGCTCAGCCTGTTCTGCGAGGA
GAGTCGCAGCGTCAACGACTGGGTGCCCAATATCACCCTCCCCGAGTGACAGCCCGGCGG
GGGTCTTGGTCTGATCGACGTGGTAACGCCCCGGGGCGCCTAGCGCGGGGCTGGCTCTGT
GGATGCGCCCTAGGAGGGCGCCCGAGTGCGGCGTGGAGACTGGCAGGCGCCGGCGCGTGG
AGAGCGGCGAGGAGGTGCGGCTCCCTCCCGAGGAGGGGCCCGGCGGCGACAGGGGCAGGC
TGGCCCCAGCCCAGGACTCTACAAGTGTGGGGAGCGGTTGCTCGCCCAGGAAGGCCGGAG
GCGGGACGTTGGCCGCGCGGCCGGGAAGGACAGACTGGCCGGGCAGGCGTGACTCAGCAG
CCTGTGCTCCCGGCAGAAAGGAGGGGAAAGGCAAGGCCAGGAGGCCTGGACTTGTACAGT
AACAGAAGCTCTGACGGACTTAGCAGTAGGCACTGCTGTTTCAAAACGGATCCGGGCGAT
GCTTCGTTTTCTAAAGGATTATGCTGCTGCAGCGTTGAGTCTTACAATAAACTTACTGAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61829536|ref|XP_581136.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61829536|ref|XP_581136.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-176, gnl|bosTau2|chr8 (52341524-52341698)
               

               
               1-176, gnl|Hg17|chr9 (89449482-89449650)
               

               
               1-176, gnl|Mm7|chr13 (50880771-50880942)
               


               
               478-1085, gnl|bosTau2|chr8 (52342465-52343075)
               

               
               478-1085, gnl|Hg17|chr9 (89450437-89451024)
               

               
               478-1085, gnl|Mm7|chr13 (50881960-50882567)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-176, gnl|bosTau2|chr8 (52341524-52341698)
               

               
               1-176, gnl|Hg17|chr9 (89449482-89449650)
               

               
               1-176, gnl|Mm7|chr13 (50880771-50880942)
               


               
               478-1085, gnl|bosTau2|chr8 (52342465-52343075)
               

               
               478-1085, gnl|Hg17|chr9 (89450437-89451024)
               

               
               478-1085, gnl|Mm7|chr13 (50881960-50882567)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mcp (0.341297)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	1-176, gnl\|bosTau2\|chr8 (52341524-52341698)
	1-176, gnl\|Hg17\|chr9 (89449482-89449650)
	1-176, gnl\|Mm7\|chr13 (50880771-50880942)

	478-1085, gnl\|bosTau2\|chr8 (52342465-52343075)
	478-1085, gnl\|Hg17\|chr9 (89450437-89451024)
	478-1085, gnl\|Mm7\|chr13 (50881960-50882567)

	mcp (0.341297)
	ecc (0.23007)
	nms (0.213858)
	jej (0.197844)
	nep (0.183925)
	nco (0.161734)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	eru (0.120048)